Wall clock time and date at job start Mon Mar 30 2020 23:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86796 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47378 * 270.00499 * 3 2 1 5 5 H 1.48506 * 109.47024 * 29.99984 * 3 2 1 6 6 H 1.48497 * 109.47242 * 149.99784 * 3 2 1 7 7 C 1.39935 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99760 * 162.60468 * 7 2 1 9 9 C 1.41440 * 120.00106 * 342.60511 * 7 2 1 10 10 C 1.40783 * 120.17337 * 154.91343 * 9 7 2 11 11 C 1.37711 * 120.03785 * 180.02562 * 10 9 7 12 12 C 1.38379 * 120.41209 * 0.03969 * 11 10 9 13 13 C 1.39885 * 120.35484 * 359.95852 * 12 11 10 14 14 C 1.47888 * 120.02324 * 180.29733 * 13 12 11 15 15 O 1.21543 * 120.00210 * 179.72231 * 14 13 12 16 16 N 1.34776 * 120.00105 * 359.72541 * 14 13 12 17 17 C 1.46495 * 120.00220 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47169 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.47663 * 304.99844 * 18 17 16 20 20 O 1.42897 * 109.47537 * 64.99809 * 18 17 16 21 21 C 1.50710 * 109.47303 * 184.99617 * 18 17 16 22 22 N 1.34779 * 119.99363 * 65.00038 * 21 18 17 23 23 O 1.21271 * 120.00275 * 245.00072 * 21 18 17 24 24 C 1.39027 * 119.95162 * 0.02562 * 13 12 11 25 25 H 0.97000 * 119.99673 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.98426 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.79980 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.81944 * 179.97438 * 12 11 10 29 29 H 0.97008 * 119.99673 * 359.97438 * 16 14 13 30 30 H 1.09005 * 109.47057 * 299.99366 * 17 16 14 31 31 H 1.09003 * 109.47373 * 59.99827 * 17 16 14 32 32 H 0.96707 * 113.99855 * 59.99880 * 20 18 17 33 33 H 0.97000 * 120.00432 * 359.97438 * 22 21 18 34 34 H 0.97004 * 119.99279 * 180.02562 * 22 21 18 35 35 H 1.07994 * 120.20374 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0510 -1.2331 -0.2802 9 6 1.3493 -2.4089 0.3651 10 6 1.8189 -3.6484 -0.1094 11 6 1.1752 -4.8121 0.2479 12 6 0.0647 -4.7735 1.0728 13 6 -0.4162 -3.5513 1.5540 14 6 -1.5996 -3.5191 2.4404 15 8 -2.0141 -2.4573 2.8624 16 7 -2.2184 -4.6671 2.7804 17 6 -3.3909 -4.6352 3.6580 18 6 -3.8976 -6.0610 3.8842 19 1 -4.0879 -6.5360 2.9218 20 8 -2.9115 -6.8094 4.5979 21 6 -5.1736 -6.0196 4.6851 22 7 -6.2787 -5.4517 4.1628 23 8 -5.2060 -6.4972 5.7993 24 6 0.2224 -2.3673 1.2029 25 1 -0.4850 0.8401 0.0004 26 1 2.6846 -3.6866 -0.7541 27 1 1.5390 -5.7609 -0.1180 28 1 -0.4330 -5.6920 1.3466 29 1 -1.8877 -5.5145 2.4433 30 1 -3.1167 -4.1906 4.6147 31 1 -4.1769 -4.0402 3.1928 32 1 -2.6920 -6.4435 5.4658 33 1 -6.2527 -5.0693 3.2717 34 1 -7.0999 -5.4247 4.6784 35 1 -0.1457 -1.4214 1.5718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326972477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:00 Heat of formation + Delta-G solvation = -114.306623 kcal Electronic energy + Delta-G solvation = -20707.229157 eV Core-core repulsion = 17283.395103 eV Total energy + Delta-G solvation = -3423.834054 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31458 -39.16092 -37.21655 -36.66776 -34.46378 -33.89522 -33.59212 -30.60844 -29.49514 -29.05288 -25.43541 -24.54319 -22.13329 -21.22272 -20.94613 -19.63113 -18.39709 -17.90803 -17.39777 -16.65791 -15.96279 -15.65511 -15.48229 -14.99514 -14.80523 -14.52177 -14.06177 -13.96778 -13.68031 -13.19654 -12.69395 -12.52789 -12.49091 -12.14609 -11.67322 -11.18339 -11.12568 -11.07019 -10.78290 -10.52238 -10.12699 -10.08487 -10.04564 -9.72285 -9.24139 -9.10682 -8.84197 -7.67212 -7.54816 -6.83051 -4.44351 2.14171 2.15406 2.78526 2.99544 3.06097 3.08608 3.14326 3.53770 3.78781 3.89915 4.08716 4.36847 4.55732 4.59558 4.69545 5.34960 5.49920 5.57973 5.76257 6.06100 6.24895 6.37175 6.65951 6.68427 6.85343 6.94960 6.97766 7.17806 7.24562 7.34548 7.65694 7.70959 7.82335 7.88264 8.01309 8.14840 8.47047 8.76811 8.79649 8.84584 10.11847 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027629 B = 0.003749 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.178457 B = 7466.734436 C = 8215.135788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.210 4.210 11 C -0.098 4.098 12 C -0.216 4.216 13 C -0.129 4.129 14 C 0.566 3.434 15 O -0.546 6.546 16 N -0.732 5.732 17 C 0.097 3.903 18 C 0.081 3.919 19 H 0.133 0.867 20 O -0.532 6.532 21 C 0.496 3.504 22 N -0.849 5.849 23 O -0.534 6.534 24 C -0.092 4.092 25 H 0.284 0.716 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.405 0.595 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.387 0.613 33 H 0.405 0.595 34 H 0.403 0.597 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.734 -7.506 3.593 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.230 4.230 11 C -0.116 4.116 12 C -0.237 4.237 13 C -0.132 4.132 14 C 0.357 3.643 15 O -0.424 6.424 16 N -0.387 5.387 17 C -0.029 4.029 18 C 0.017 3.983 19 H 0.150 0.850 20 O -0.337 6.337 21 C 0.279 3.721 22 N -0.415 5.415 23 O -0.410 6.410 24 C -0.112 4.112 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.242 0.758 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.237 0.763 33 H 0.234 0.766 34 H 0.234 0.766 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.081 -7.307 4.072 12.346 hybrid contribution -0.023 0.876 -0.035 0.877 sum -9.104 -6.430 4.037 11.854 Atomic orbital electron populations 1.69787 1.07585 1.29755 1.33790 1.25958 0.94775 1.01546 0.92260 0.86284 0.80637 0.80476 0.79227 1.19436 1.19958 1.18367 1.19587 0.98067 0.91000 1.40245 0.90069 1.17595 0.91192 0.92474 0.89132 1.21122 1.03457 0.92820 1.05593 1.20448 0.96013 0.96767 0.98372 1.20363 1.01356 0.94660 1.07279 1.19420 0.96591 0.95401 1.01798 1.18885 0.83166 0.82573 0.79724 1.90703 1.66312 1.30171 1.55188 1.45815 1.30886 1.10419 1.51591 1.21786 0.90141 0.94558 0.96396 1.22116 0.86272 0.93506 0.96381 0.84965 1.86607 1.57405 1.54230 1.35483 1.21388 0.86276 0.77130 0.87278 1.43922 1.13734 1.61944 1.21887 1.90774 1.84838 1.45718 1.19666 1.21626 0.96433 0.96365 0.96745 0.90465 0.88575 0.88821 0.89080 0.75827 0.90813 0.90452 0.76299 0.76558 0.76568 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.40 10.97 55.55 0.61 -19.79 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.91 9.05 -37.73 -0.34 -12.25 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 9 C 0.10 2.56 5.57 -106.87 -0.59 1.97 16 10 C -0.21 -4.89 9.78 -38.81 -0.38 -5.27 16 11 C -0.10 -2.04 10.01 -39.72 -0.40 -2.44 16 12 C -0.22 -4.42 9.55 -38.91 -0.37 -4.79 16 13 C -0.13 -2.95 5.87 -105.04 -0.62 -3.56 16 14 C 0.57 11.74 7.77 -12.31 -0.10 11.65 16 15 O -0.55 -13.05 16.33 5.33 0.09 -12.97 16 16 N -0.73 -11.03 5.45 -61.24 -0.33 -11.36 16 17 C 0.10 1.14 5.28 -4.05 -0.02 1.12 16 18 C 0.08 0.77 3.41 -27.88 -0.10 0.68 16 19 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 20 O -0.53 -5.98 12.94 -55.09 -0.71 -6.69 16 21 C 0.50 5.01 7.44 -10.98 -0.08 4.93 16 22 N -0.85 -5.42 8.77 31.22 0.27 -5.15 16 23 O -0.53 -7.55 17.16 -14.30 -0.25 -7.79 16 24 C -0.09 -2.39 8.23 -38.44 -0.32 -2.71 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 26 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 27 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.09 1.53 6.38 -52.49 -0.33 1.20 16 29 H 0.41 5.47 6.49 -40.82 -0.26 5.20 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.85 7.77 -51.93 -0.40 0.45 16 32 H 0.39 3.71 8.79 45.56 0.40 4.11 16 33 H 0.41 1.67 8.53 -40.82 -0.35 1.32 16 34 H 0.40 2.17 8.93 -40.82 -0.36 1.80 16 35 H 0.13 3.76 5.76 -52.49 -0.30 3.46 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -32.93 310.90 -6.93 -39.86 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -2.86 Total: 14.69 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.40 Total: -8.93 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.55 Total: -36.30 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.87 Total: -27.45 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.93 -6.93 -39.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326972477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.449 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds