Wall clock time and date at job start Mon Mar 30 2020 23:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86796 * 120.00059 * 2 1 4 4 H 1.48500 * 109.47378 * 270.00499 * 3 2 1 5 5 H 1.48506 * 109.47024 * 29.99984 * 3 2 1 6 6 H 1.48497 * 109.47242 * 149.99784 * 3 2 1 7 7 C 1.39935 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99760 * 162.60468 * 7 2 1 9 9 C 1.41440 * 120.00106 * 342.60511 * 7 2 1 10 10 C 1.40783 * 120.17337 * 154.91343 * 9 7 2 11 11 C 1.37711 * 120.03785 * 180.02562 * 10 9 7 12 12 C 1.38379 * 120.41209 * 0.03969 * 11 10 9 13 13 C 1.39885 * 120.35484 * 359.95852 * 12 11 10 14 14 C 1.47888 * 120.02324 * 180.29733 * 13 12 11 15 15 O 1.21543 * 120.00210 * 179.72231 * 14 13 12 16 16 N 1.34776 * 120.00105 * 359.72541 * 14 13 12 17 17 C 1.46495 * 120.00220 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47169 * 179.97438 * 17 16 14 19 19 H 1.09001 * 109.47663 * 304.99844 * 18 17 16 20 20 O 1.42897 * 109.47537 * 64.99809 * 18 17 16 21 21 C 1.50710 * 109.47303 * 184.99617 * 18 17 16 22 22 N 1.34779 * 119.99363 * 65.00038 * 21 18 17 23 23 O 1.21271 * 120.00275 * 245.00072 * 21 18 17 24 24 C 1.39027 * 119.95162 * 0.02562 * 13 12 11 25 25 H 0.97000 * 119.99673 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.98426 * 0.02562 * 10 9 7 27 27 H 1.07999 * 119.79980 * 180.02562 * 11 10 9 28 28 H 1.07997 * 119.81944 * 179.97438 * 12 11 10 29 29 H 0.97008 * 119.99673 * 359.97438 * 16 14 13 30 30 H 1.09005 * 109.47057 * 299.99366 * 17 16 14 31 31 H 1.09003 * 109.47373 * 59.99827 * 17 16 14 32 32 H 0.96707 * 113.99855 * 59.99880 * 20 18 17 33 33 H 0.97000 * 120.00432 * 359.97438 * 22 21 18 34 34 H 0.97004 * 119.99279 * 180.02562 * 22 21 18 35 35 H 1.07994 * 120.20374 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0510 -1.2331 -0.2802 9 6 1.3493 -2.4089 0.3651 10 6 1.8189 -3.6484 -0.1094 11 6 1.1752 -4.8121 0.2479 12 6 0.0647 -4.7735 1.0728 13 6 -0.4162 -3.5513 1.5540 14 6 -1.5996 -3.5191 2.4404 15 8 -2.0141 -2.4573 2.8624 16 7 -2.2184 -4.6671 2.7804 17 6 -3.3909 -4.6352 3.6580 18 6 -3.8976 -6.0610 3.8842 19 1 -4.0879 -6.5360 2.9218 20 8 -2.9115 -6.8094 4.5979 21 6 -5.1736 -6.0196 4.6851 22 7 -6.2787 -5.4517 4.1628 23 8 -5.2060 -6.4972 5.7993 24 6 0.2224 -2.3673 1.2029 25 1 -0.4850 0.8401 0.0004 26 1 2.6846 -3.6866 -0.7541 27 1 1.5390 -5.7609 -0.1180 28 1 -0.4330 -5.6920 1.3466 29 1 -1.8877 -5.5145 2.4433 30 1 -3.1167 -4.1906 4.6147 31 1 -4.1769 -4.0402 3.1928 32 1 -2.6920 -6.4435 5.4658 33 1 -6.2527 -5.0693 3.2717 34 1 -7.0999 -5.4247 4.6784 35 1 -0.1457 -1.4214 1.5718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326972477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:00 Heat of formation + Delta-G solvation = -142.011583 kcal Electronic energy + Delta-G solvation = -20708.430534 eV Core-core repulsion = 17283.395103 eV Total energy + Delta-G solvation = -3425.035431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30036 -40.60799 -38.84242 -37.73061 -35.71196 -35.41454 -34.70985 -32.22831 -31.27177 -30.22963 -27.22405 -25.74482 -23.65099 -22.75088 -22.05599 -21.12557 -19.57538 -19.19332 -18.16943 -18.15111 -17.10484 -16.99291 -16.78434 -16.52243 -16.19370 -15.86980 -15.26673 -15.10559 -15.09181 -14.79195 -14.35396 -14.23673 -13.67411 -13.42175 -13.01385 -12.92765 -12.76886 -12.52928 -12.19726 -11.97392 -11.88690 -11.49486 -11.07975 -11.04975 -10.77223 -10.67847 -10.21860 -9.45590 -9.36380 -8.65379 -6.36744 0.38725 1.02678 1.33014 1.37725 1.47296 1.53429 2.06126 2.09829 2.20608 2.53827 2.79862 3.24614 3.47620 3.71208 3.85777 3.90358 4.07856 4.43491 4.51310 4.61997 4.63195 4.92278 5.10532 5.20774 5.31814 5.36343 5.53754 5.78281 5.87703 5.94388 6.06831 6.23175 6.30363 6.48270 6.51624 6.67516 6.89740 6.95892 7.16878 7.28173 8.31581 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027629 B = 0.003749 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.178457 B = 7466.734436 C = 8215.135788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.500 4.500 8 H 0.082 0.918 9 C 0.067 3.933 10 C -0.217 4.217 11 C -0.097 4.097 12 C -0.195 4.195 13 C -0.139 4.139 14 C 0.563 3.437 15 O -0.586 6.586 16 N -0.706 5.706 17 C 0.095 3.905 18 C 0.094 3.906 19 H 0.161 0.839 20 O -0.545 6.545 21 C 0.497 3.503 22 N -0.829 5.829 23 O -0.579 6.579 24 C -0.130 4.130 25 H 0.286 0.714 26 H 0.107 0.893 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.417 0.583 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.393 0.607 33 H 0.419 0.581 34 H 0.411 0.589 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.210 -9.532 3.185 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.184 4.184 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.100 0.900 9 C 0.065 3.935 10 C -0.236 4.236 11 C -0.115 4.115 12 C -0.215 4.215 13 C -0.142 4.142 14 C 0.353 3.647 15 O -0.468 6.468 16 N -0.360 5.360 17 C -0.029 4.029 18 C 0.031 3.969 19 H 0.178 0.822 20 O -0.351 6.351 21 C 0.280 3.720 22 N -0.395 5.395 23 O -0.458 6.458 24 C -0.151 4.151 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.255 0.745 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.243 0.757 33 H 0.251 0.749 34 H 0.243 0.757 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.588 -9.379 3.634 13.896 hybrid contribution 0.037 1.286 0.108 1.291 sum -9.551 -8.093 3.742 13.066 Atomic orbital electron populations 1.69879 1.09142 1.30564 1.35479 1.26806 0.95419 1.04800 0.91338 0.85223 0.79086 0.75914 0.79653 1.18208 1.19692 1.18021 1.19859 0.98404 0.92248 1.42387 0.89952 1.17934 0.91860 0.93842 0.89884 1.21423 1.03878 0.92915 1.05434 1.20935 0.95431 0.97642 0.97470 1.20880 1.00464 0.95238 1.04874 1.19753 0.97152 0.95442 1.01890 1.18669 0.83006 0.83429 0.79570 1.90684 1.67341 1.32033 1.56728 1.45538 1.30819 1.09034 1.50599 1.21972 0.89094 0.96582 0.95297 1.22113 0.85612 0.91871 0.97314 0.82195 1.86579 1.57811 1.54691 1.36003 1.21417 0.87044 0.76897 0.86603 1.43795 1.13106 1.60163 1.22420 1.90766 1.85578 1.48024 1.21472 1.21434 0.98222 0.96452 0.98981 0.90304 0.87487 0.84428 0.84414 0.74462 0.91791 0.89149 0.75696 0.74917 0.75679 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.20 10.97 21.82 0.24 -44.96 16 2 C 0.03 1.61 5.14 85.25 0.44 2.05 16 3 Si 0.98 39.14 29.59 68.60 2.03 41.17 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.50 -26.96 9.05 23.47 0.21 -26.74 16 8 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 9 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 10 C -0.22 -9.95 9.78 22.77 0.22 -9.73 16 11 C -0.10 -3.73 10.01 22.18 0.22 -3.50 16 12 C -0.19 -7.32 9.55 22.70 0.22 -7.10 16 13 C -0.14 -6.31 5.87 -20.13 -0.12 -6.43 16 14 C 0.56 23.05 7.77 86.80 0.67 23.73 16 15 O -0.59 -28.66 16.33 -3.85 -0.06 -28.72 16 16 N -0.71 -19.47 5.45 -465.94 -2.54 -22.01 16 17 C 0.10 2.03 5.28 86.38 0.46 2.49 16 18 C 0.09 1.52 3.41 29.85 0.10 1.62 16 19 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 20 O -0.54 -10.82 12.94 -129.99 -1.68 -12.51 16 21 C 0.50 8.92 7.44 87.66 0.65 9.57 16 22 N -0.83 -8.40 8.77 -173.53 -1.52 -9.92 16 23 O -0.58 -15.64 17.16 15.99 0.27 -15.36 16 24 C -0.13 -7.07 8.23 23.01 0.19 -6.88 16 25 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 26 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 28 H 0.14 3.85 6.38 -2.91 -0.02 3.83 16 29 H 0.42 9.51 6.49 -92.70 -0.60 8.91 16 30 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.09 1.77 7.77 -2.39 -0.02 1.75 16 32 H 0.39 6.89 8.79 -74.05 -0.65 6.24 16 33 H 0.42 2.10 8.53 -92.71 -0.79 1.31 16 34 H 0.41 3.44 8.93 -92.71 -0.83 2.62 16 35 H 0.10 5.99 5.76 -2.91 -0.02 5.97 16 Total: -1.00 -75.79 310.90 -1.80 -77.59 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -1.68 Total: 32.18 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 3.15 Total: -17.46 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -3.82 Total: -76.89 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -1.47 Total: -56.59 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -75.79 -1.80 -77.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326972477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.425 kcal (2) G-P(sol) polarization free energy of solvation -75.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds