Wall clock time and date at job start Mon Mar 30 2020 23:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48494 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47287 * 300.00429 * 3 2 1 6 6 H 1.48494 * 109.46872 * 60.00123 * 3 2 1 7 7 C 1.37881 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99905 * 175.46655 * 7 2 1 9 9 C 1.50703 * 119.99978 * 355.73352 * 7 2 1 10 10 C 1.52997 * 115.55026 * 35.32195 * 9 7 2 11 11 O 1.45203 * 109.47112 * 54.24143 * 10 9 7 12 12 C 1.34707 * 117.00193 * 184.94089 * 11 10 9 13 13 O 1.21473 * 119.99864 * 5.03173 * 12 11 10 14 14 C 1.47730 * 120.00176 * 185.03470 * 12 11 10 15 15 C 1.39620 * 120.14779 * 4.76501 * 14 12 11 16 16 C 1.37953 * 119.84668 * 179.71957 * 15 14 12 17 17 C 1.38360 * 120.14860 * 0.56001 * 16 15 14 18 18 C 1.50695 * 119.85238 * 179.69689 * 17 16 15 19 19 F 1.39905 * 109.47180 * 270.02325 * 18 17 16 20 20 C 1.38377 * 120.30463 * 359.71424 * 17 16 15 21 21 C 1.37951 * 120.14658 * 0.02562 * 20 17 16 22 22 C 1.52998 * 117.49798 * 249.65062 * 9 7 2 23 23 C 1.52995 * 117.49627 * 180.99297 * 9 7 2 24 24 H 0.96993 * 119.99728 * 4.99867 * 1 2 3 25 25 H 1.08999 * 109.47300 * 174.23798 * 10 9 7 26 26 H 1.09004 * 109.47367 * 294.24548 * 10 9 7 27 27 H 1.08001 * 120.08088 * 0.02562 * 15 14 12 28 28 H 1.07997 * 119.92550 * 180.25358 * 16 15 14 29 29 H 1.09002 * 109.47248 * 30.01832 * 18 17 16 30 30 H 1.08997 * 109.47463 * 150.01787 * 18 17 16 31 31 H 1.07999 * 119.92655 * 180.02562 * 20 17 16 32 32 H 1.07995 * 120.07311 * 179.97438 * 21 20 17 33 33 H 1.09000 * 117.49816 * 0.02562 * 22 9 7 34 34 H 1.09001 * 117.49687 * 145.02500 * 22 9 7 35 35 H 1.08999 * 117.49783 * 214.98116 * 23 9 7 36 36 H 1.09003 * 117.50164 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0820 -1.1956 -0.0745 9 6 1.2541 -2.4974 0.0960 10 6 -0.0999 -2.5335 -0.6155 11 8 0.0719 -2.1420 -2.0032 12 6 -1.0444 -2.0222 -2.7476 13 8 -2.1360 -2.1491 -2.2300 14 6 -0.9410 -1.7367 -4.1933 15 6 0.3102 -1.6888 -4.8109 16 6 0.3991 -1.4273 -6.1625 17 6 -0.7473 -1.2014 -6.9035 18 6 -0.6419 -0.9097 -8.3782 19 9 -0.5234 0.4707 -8.5732 20 6 -1.9902 -1.2417 -6.2966 21 6 -2.0939 -1.5074 -4.9469 22 6 1.3924 -3.2979 1.3925 23 6 2.0773 -3.7869 0.1139 24 1 -0.4849 0.8368 -0.0732 25 1 -0.5071 -3.5436 -0.5708 26 1 -0.7864 -1.8429 -0.1255 27 1 1.2061 -1.8609 -4.2329 28 1 1.3661 -1.3940 -6.6424 29 1 0.2360 -1.4108 -8.7859 30 1 -1.5358 -1.2729 -8.8853 31 1 -2.8811 -1.0649 -6.8809 32 1 -3.0645 -1.5382 -4.4744 33 1 2.0259 -2.8817 2.1758 34 1 0.5189 -3.8506 1.7383 35 1 1.6542 -4.6611 -0.3809 36 1 3.1617 -3.6926 0.0554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327517087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:12 Heat of formation + Delta-G solvation = -85.716827 kcal Electronic energy + Delta-G solvation = -21068.577270 eV Core-core repulsion = 17626.063001 eV Total energy + Delta-G solvation = -3442.514269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.79259 -39.86089 -38.50777 -36.68606 -34.95122 -32.44345 -32.18215 -31.01566 -27.53118 -26.14275 -25.32238 -22.68612 -22.56517 -21.27953 -20.16846 -19.17441 -17.45397 -16.77791 -16.39472 -16.10200 -15.98711 -15.50294 -15.34136 -14.58483 -14.47084 -14.34479 -13.85986 -13.45471 -13.27898 -13.00222 -12.59372 -11.98919 -11.83567 -11.56654 -11.42124 -11.15482 -11.03916 -10.96109 -10.76772 -10.51195 -10.35742 -9.98091 -9.57823 -9.31447 -8.99096 -8.98401 -8.94203 -8.78172 -8.26464 -5.99366 -4.13229 0.79443 1.38570 3.03120 3.25661 3.34745 3.37631 3.52643 3.97078 4.30992 4.35158 4.50806 4.69074 4.92951 4.96955 4.97945 5.33502 5.40700 5.44027 5.49048 5.60028 5.81074 5.98971 6.02915 6.18574 6.27311 6.36696 6.44706 6.49582 6.61654 6.65272 6.79658 6.84725 6.96246 7.21831 7.45716 7.59087 7.91025 8.31001 8.66498 8.85644 9.49273 10.95178 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.005018 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.251060 B = 5578.786545 C = 6268.631414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.480 4.480 8 H 0.063 0.937 9 C 0.045 3.955 10 C 0.119 3.881 11 O -0.314 6.314 12 C 0.499 3.501 13 O -0.520 6.520 14 C -0.097 4.097 15 C -0.062 4.062 16 C -0.112 4.112 17 C -0.119 4.119 18 C 0.106 3.894 19 F -0.211 7.211 20 C -0.113 4.113 21 C -0.064 4.064 22 C -0.195 4.195 23 C -0.209 4.209 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.120 0.880 27 H 0.147 0.853 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 -3.779 -13.870 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.517 4.517 8 H 0.081 0.919 9 C 0.044 3.956 10 C 0.046 3.954 11 O -0.228 6.228 12 C 0.343 3.657 13 O -0.411 6.411 14 C -0.098 4.098 15 C -0.080 4.080 16 C -0.130 4.130 17 C -0.119 4.119 18 C 0.052 3.948 19 F -0.192 7.192 20 C -0.131 4.131 21 C -0.082 4.082 22 C -0.233 4.233 23 C -0.246 4.246 24 H 0.073 0.927 25 H 0.038 0.962 26 H 0.138 0.862 27 H 0.165 0.835 28 H 0.149 0.851 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.192 -3.636 -13.605 14.252 hybrid contribution 0.353 0.873 0.197 0.962 sum -1.839 -2.762 -13.407 13.812 Atomic orbital electron populations 1.69767 1.05909 1.26680 1.49645 1.24971 0.94862 0.99242 0.93945 0.86449 0.80037 0.83345 0.77707 1.19667 1.20890 1.20884 1.20481 0.92762 0.88340 1.50137 0.91911 1.18942 0.92241 0.90638 0.93746 1.22890 0.99644 0.96350 0.76536 1.86477 1.32946 1.77620 1.25750 1.20937 0.83417 0.74123 0.87236 1.90742 1.29068 1.47767 1.73562 1.19510 0.94629 1.04300 0.91388 1.21642 0.97794 0.94220 0.94352 1.21035 0.97995 1.00015 0.93981 1.20415 0.94273 1.01280 0.95966 1.20824 1.04010 0.77267 0.92722 1.92823 1.97689 1.32701 1.95997 1.20925 0.96956 1.00690 0.94550 1.21279 0.98467 0.95230 0.93245 1.22987 1.01766 1.06156 0.92439 1.22948 0.98739 0.99929 1.02977 0.92740 0.96155 0.86202 0.83515 0.85121 0.89733 0.89823 0.85195 0.84338 0.89785 0.91416 0.91286 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.55 10.16 55.43 0.56 -23.99 16 2 C 0.07 1.95 5.35 -17.82 -0.10 1.85 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.48 -12.86 8.79 -34.44 -0.30 -13.16 16 8 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 9 C 0.04 1.11 2.21 -155.66 -0.34 0.76 16 10 C 0.12 2.94 4.45 37.16 0.17 3.11 16 11 O -0.31 -7.52 8.99 -40.51 -0.36 -7.88 16 12 C 0.50 10.99 7.88 34.61 0.27 11.27 16 13 O -0.52 -12.43 16.06 -19.25 -0.31 -12.74 16 14 C -0.10 -1.73 5.87 -104.99 -0.62 -2.34 16 15 C -0.06 -0.97 9.62 -39.17 -0.38 -1.35 16 16 C -0.11 -1.41 9.68 -39.64 -0.38 -1.80 16 17 C -0.12 -1.38 5.60 -104.53 -0.59 -1.97 16 18 C 0.11 0.93 7.67 36.00 0.28 1.20 16 19 F -0.21 -2.51 17.34 2.25 0.04 -2.47 16 20 C -0.11 -1.37 9.68 -39.64 -0.38 -1.76 16 21 C -0.06 -0.97 9.60 -39.17 -0.38 -1.34 16 22 C -0.20 -4.29 9.96 -26.70 -0.27 -4.56 16 23 C -0.21 -4.45 9.92 -26.70 -0.26 -4.71 16 24 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 25 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.12 3.30 5.76 -51.93 -0.30 3.00 16 27 H 0.15 2.34 7.62 -52.49 -0.40 1.94 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.14 2.03 7.66 -52.49 -0.40 1.63 16 33 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -30.37 319.80 -8.00 -38.37 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.44 Total: 2.68 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -3.28 Total: -14.79 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.56 Total: -23.99 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.67 Total: -20.63 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.37 -8.00 -38.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327517087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.350 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds