Wall clock time and date at job start Mon Mar 30 2020 23:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48494 * 109.47129 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47287 * 300.00429 * 3 2 1 6 6 H 1.48494 * 109.46872 * 60.00123 * 3 2 1 7 7 C 1.37881 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99905 * 175.46655 * 7 2 1 9 9 C 1.50703 * 119.99978 * 355.73352 * 7 2 1 10 10 C 1.52997 * 115.55026 * 35.32195 * 9 7 2 11 11 O 1.45203 * 109.47112 * 54.24143 * 10 9 7 12 12 C 1.34707 * 117.00193 * 184.94089 * 11 10 9 13 13 O 1.21473 * 119.99864 * 5.03173 * 12 11 10 14 14 C 1.47730 * 120.00176 * 185.03470 * 12 11 10 15 15 C 1.39620 * 120.14779 * 4.76501 * 14 12 11 16 16 C 1.37953 * 119.84668 * 179.71957 * 15 14 12 17 17 C 1.38360 * 120.14860 * 0.56001 * 16 15 14 18 18 C 1.50695 * 119.85238 * 179.69689 * 17 16 15 19 19 F 1.39905 * 109.47180 * 270.02325 * 18 17 16 20 20 C 1.38377 * 120.30463 * 359.71424 * 17 16 15 21 21 C 1.37951 * 120.14658 * 0.02562 * 20 17 16 22 22 C 1.52998 * 117.49798 * 249.65062 * 9 7 2 23 23 C 1.52995 * 117.49627 * 180.99297 * 9 7 2 24 24 H 0.96993 * 119.99728 * 4.99867 * 1 2 3 25 25 H 1.08999 * 109.47300 * 174.23798 * 10 9 7 26 26 H 1.09004 * 109.47367 * 294.24548 * 10 9 7 27 27 H 1.08001 * 120.08088 * 0.02562 * 15 14 12 28 28 H 1.07997 * 119.92550 * 180.25358 * 16 15 14 29 29 H 1.09002 * 109.47248 * 30.01832 * 18 17 16 30 30 H 1.08997 * 109.47463 * 150.01787 * 18 17 16 31 31 H 1.07999 * 119.92655 * 180.02562 * 20 17 16 32 32 H 1.07995 * 120.07311 * 179.97438 * 21 20 17 33 33 H 1.09000 * 117.49816 * 0.02562 * 22 9 7 34 34 H 1.09001 * 117.49687 * 145.02500 * 22 9 7 35 35 H 1.08999 * 117.49783 * 214.98116 * 23 9 7 36 36 H 1.09003 * 117.50164 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0820 -1.1956 -0.0745 9 6 1.2541 -2.4974 0.0960 10 6 -0.0999 -2.5335 -0.6155 11 8 0.0719 -2.1420 -2.0032 12 6 -1.0444 -2.0222 -2.7476 13 8 -2.1360 -2.1491 -2.2300 14 6 -0.9410 -1.7367 -4.1933 15 6 0.3102 -1.6888 -4.8109 16 6 0.3991 -1.4273 -6.1625 17 6 -0.7473 -1.2014 -6.9035 18 6 -0.6419 -0.9097 -8.3782 19 9 -0.5234 0.4707 -8.5732 20 6 -1.9902 -1.2417 -6.2966 21 6 -2.0939 -1.5074 -4.9469 22 6 1.3924 -3.2979 1.3925 23 6 2.0773 -3.7869 0.1139 24 1 -0.4849 0.8368 -0.0732 25 1 -0.5071 -3.5436 -0.5708 26 1 -0.7864 -1.8429 -0.1255 27 1 1.2061 -1.8609 -4.2329 28 1 1.3661 -1.3940 -6.6424 29 1 0.2360 -1.4108 -8.7859 30 1 -1.5358 -1.2729 -8.8853 31 1 -2.8811 -1.0649 -6.8809 32 1 -3.0645 -1.5382 -4.4744 33 1 2.0259 -2.8817 2.1758 34 1 0.5189 -3.8506 1.7383 35 1 1.6542 -4.6611 -0.3809 36 1 3.1617 -3.6926 0.0554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327517087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:11 Heat of formation + Delta-G solvation = -100.562594 kcal Electronic energy + Delta-G solvation = -21069.221031 eV Core-core repulsion = 17626.063001 eV Total energy + Delta-G solvation = -3443.158030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.57553 -41.39343 -39.84942 -38.48718 -36.76080 -34.21306 -33.52785 -32.09980 -28.92371 -27.75434 -27.16478 -23.87295 -23.72256 -23.00541 -21.55650 -21.10475 -18.93853 -18.57113 -17.70511 -17.22771 -17.07951 -16.82135 -16.74569 -16.48664 -15.79578 -15.41796 -15.39080 -14.93801 -14.49648 -14.34262 -14.04416 -13.65562 -13.49445 -13.36806 -12.94268 -12.71751 -12.35268 -12.29623 -12.13971 -12.11681 -11.81865 -11.76553 -11.39414 -11.19558 -10.92391 -10.70603 -10.19682 -10.09202 -10.05573 -8.01538 -6.21780 -0.41576 0.31178 1.38292 1.41437 1.52005 1.57065 1.92464 2.39831 2.69514 3.01767 3.43396 3.56063 3.69743 3.85596 3.92294 4.13899 4.14534 4.22901 4.34670 4.37418 4.51971 4.58659 4.66509 4.76428 4.83116 4.90458 4.94612 4.99056 5.14702 5.20680 5.30961 5.37563 5.44497 5.51132 5.77782 5.79127 5.85087 6.30724 6.75790 6.95346 7.42409 8.90009 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.005018 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.251060 B = 5578.786545 C = 6268.631414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.492 4.492 8 H 0.059 0.941 9 C 0.003 3.997 10 C 0.126 3.874 11 O -0.326 6.326 12 C 0.492 3.508 13 O -0.552 6.552 14 C -0.132 4.132 15 C -0.074 4.074 16 C -0.107 4.107 17 C -0.107 4.107 18 C 0.104 3.896 19 F -0.228 7.228 20 C -0.104 4.104 21 C -0.072 4.072 22 C -0.187 4.187 23 C -0.185 4.185 24 H 0.256 0.744 25 H 0.028 0.972 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.162 0.838 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.167 0.833 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 -3.914 -16.436 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.529 4.529 8 H 0.077 0.923 9 C 0.002 3.998 10 C 0.053 3.947 11 O -0.240 6.240 12 C 0.339 3.661 13 O -0.446 6.446 14 C -0.133 4.133 15 C -0.092 4.092 16 C -0.125 4.125 17 C -0.108 4.108 18 C 0.050 3.950 19 F -0.209 7.209 20 C -0.122 4.122 21 C -0.091 4.091 22 C -0.224 4.224 23 C -0.222 4.222 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.105 0.895 27 H 0.152 0.848 28 H 0.180 0.820 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.184 0.816 32 H 0.151 0.849 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.367 -3.782 -16.173 16.666 hybrid contribution 0.092 0.868 0.904 1.257 sum -1.275 -2.914 -15.269 15.597 Atomic orbital electron populations 1.69964 1.07049 1.26708 1.50802 1.25658 0.95518 1.02120 0.93983 0.85561 0.79311 0.79775 0.77375 1.18691 1.21130 1.20727 1.20719 0.92700 0.89629 1.49866 0.92314 1.19080 0.92924 0.91529 0.96218 1.22625 0.99288 0.95711 0.77082 1.86476 1.34099 1.78034 1.25419 1.21795 0.82520 0.72952 0.88860 1.90697 1.29813 1.49492 1.74587 1.19452 0.96752 1.08108 0.89003 1.21621 0.96425 0.95245 0.95901 1.21377 1.00052 0.98526 0.92521 1.20888 0.93469 0.98599 0.97840 1.21137 1.07190 0.76323 0.90387 1.92795 1.97908 1.34360 1.95877 1.21328 0.98857 0.98768 0.93201 1.21381 0.97359 0.95708 0.94625 1.23002 1.02309 1.05129 0.92008 1.22966 0.98883 0.98485 1.01827 0.93413 0.95403 0.89484 0.84806 0.82042 0.86820 0.86592 0.81571 0.84858 0.89669 0.90011 0.89447 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.33 10.16 21.45 0.22 -52.11 16 2 C 0.03 1.46 5.35 84.65 0.45 1.91 16 3 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 7 C -0.49 -26.71 8.79 25.60 0.23 -26.48 16 8 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.00 0.14 2.21 -52.93 -0.12 0.03 16 10 C 0.13 6.50 4.45 71.98 0.32 6.82 16 11 O -0.33 -16.34 8.99 -56.17 -0.51 -16.84 16 12 C 0.49 22.86 7.88 70.33 0.55 23.41 16 13 O -0.55 -28.00 16.06 19.92 0.32 -27.68 16 14 C -0.13 -4.83 5.87 -20.10 -0.12 -4.95 16 15 C -0.07 -2.30 9.62 22.54 0.22 -2.09 16 16 C -0.11 -2.43 9.68 22.23 0.22 -2.22 16 17 C -0.11 -2.12 5.60 -19.80 -0.11 -2.23 16 18 C 0.10 1.30 7.67 71.23 0.55 1.85 16 19 F -0.23 -4.55 17.34 44.97 0.78 -3.77 16 20 C -0.10 -2.23 9.68 22.23 0.22 -2.02 16 21 C -0.07 -2.17 9.60 22.54 0.22 -1.96 16 22 C -0.19 -8.08 9.96 30.62 0.30 -7.77 16 23 C -0.18 -7.65 9.92 30.62 0.30 -7.35 16 24 H 0.26 14.46 8.32 -92.71 -0.77 13.69 16 25 H 0.03 1.34 8.09 -2.39 -0.02 1.32 16 26 H 0.09 5.06 5.76 -2.38 -0.01 5.05 16 27 H 0.13 4.42 7.62 -2.91 -0.02 4.40 16 28 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.11 0.84 8.08 -2.39 -0.02 0.82 16 30 H 0.12 0.79 8.08 -2.39 -0.02 0.77 16 31 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.13 4.02 7.66 -2.91 -0.02 4.00 16 33 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -68.40 319.80 7.15 -61.25 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.09 Total: 16.38 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 3.22 Total: -23.04 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.22 Total: -52.11 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.19 Total: -44.52 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.78 Total: -3.77 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.40 7.15 -61.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327517087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.310 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds