Wall clock time and date at job start Mon Mar 30 2020 23:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86794 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47002 * 239.99736 * 3 2 1 5 5 H 1.48498 * 109.47634 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47267 * 120.00308 * 3 2 1 7 7 C 1.40225 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00159 * 197.87704 * 7 2 1 9 9 C 1.41113 * 119.99501 * 17.87474 * 7 2 1 10 10 C 1.40888 * 120.11022 * 24.64249 * 9 7 2 11 11 C 1.36310 * 119.89369 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.10924 * 0.25762 * 11 10 9 13 13 C 1.47636 * 119.89616 * 179.74696 * 12 11 10 14 14 O 1.21589 * 120.00121 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00414 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00427 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.47534 * 34.99736 * 16 15 13 18 18 C 1.52994 * 109.47471 * 155.00252 * 16 15 13 19 19 O 1.42899 * 109.47440 * 64.99343 * 18 16 15 20 20 C 1.50709 * 109.46902 * 275.00045 * 16 15 13 21 21 N 1.34777 * 119.99498 * 179.97438 * 20 16 15 22 22 O 1.21276 * 120.00382 * 359.97438 * 20 16 15 23 23 C 1.40009 * 120.20476 * 359.48349 * 12 11 10 24 24 C 1.36318 * 120.11027 * 0.51595 * 23 12 11 25 25 H 0.97002 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.04650 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.94466 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99241 * 0.02562 * 15 13 12 29 29 H 1.09000 * 109.47975 * 185.00064 * 18 16 15 30 30 H 1.09002 * 109.47067 * 305.00101 * 18 16 15 31 31 H 0.96699 * 114.00152 * 180.02562 * 19 18 16 32 32 H 0.96999 * 120.00671 * 0.02562 * 21 20 16 33 33 H 0.97008 * 119.99561 * 179.97438 * 21 20 16 34 34 H 1.08002 * 119.94487 * 180.25903 * 23 12 11 35 35 H 1.07999 * 120.05333 * 179.72150 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7465 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0077 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2877 9 6 1.3531 -2.4071 -0.3740 10 6 0.2242 -2.3594 -1.2156 11 6 -0.4050 -3.5142 -1.5742 12 6 0.0656 -4.7460 -1.1034 13 6 -0.6228 -5.9934 -1.4903 14 8 -1.5971 -5.9500 -2.2163 15 7 -0.1713 -7.1803 -1.0387 16 6 -0.8547 -8.4180 -1.4222 17 1 -1.2271 -8.3264 -2.4424 18 6 0.1267 -9.5888 -1.3407 19 8 0.5256 -9.7824 0.0178 20 6 -2.0098 -8.6647 -0.4861 21 7 -2.7878 -9.7532 -0.6483 22 8 -2.2392 -7.8838 0.4130 23 6 1.1904 -4.7988 -0.2713 24 6 1.8263 -3.6493 0.0928 25 1 -0.4850 0.8400 0.0004 26 1 -0.1425 -1.4094 -1.5752 27 1 -1.2707 -3.4787 -2.2189 28 1 0.6058 -7.2148 -0.4592 29 1 -0.3556 -10.4938 -1.7102 30 1 1.0042 -9.3704 -1.9493 31 1 1.1496 -10.5102 0.1446 32 1 -2.6042 -10.3780 -1.3671 33 1 -3.5311 -9.9122 -0.0455 34 1 1.5523 -5.7515 0.0861 35 1 2.6911 -3.6908 0.7384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328505661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:23 Heat of formation + Delta-G solvation = -109.393141 kcal Electronic energy + Delta-G solvation = -21004.357515 eV Core-core repulsion = 17580.736525 eV Total energy + Delta-G solvation = -3423.620990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03589 -38.47000 -37.14777 -36.84376 -33.96376 -33.81341 -33.56194 -30.42745 -29.68576 -28.78765 -25.79493 -24.05151 -22.11256 -20.97766 -20.13253 -19.69903 -18.01512 -17.66649 -17.36660 -16.83818 -16.48891 -15.52657 -15.28728 -14.81062 -14.34419 -13.99949 -13.96057 -13.82018 -13.39418 -13.12956 -12.70529 -12.40806 -12.15354 -11.79922 -11.72767 -11.32335 -11.17635 -10.94984 -10.57942 -10.53501 -10.01793 -9.92205 -9.59790 -9.47240 -9.26918 -8.98690 -8.62723 -7.62334 -7.49804 -6.95575 -4.53885 2.29506 2.82839 2.96104 2.99086 3.02308 3.10820 3.37134 3.74599 3.79281 3.88969 4.02467 4.64249 4.71408 4.82854 4.97106 5.28857 5.39359 5.65069 6.05380 6.14215 6.35818 6.76818 6.86007 6.86669 6.92438 7.13155 7.17092 7.28083 7.39580 7.50652 7.69142 7.83753 7.93911 8.12011 8.27963 8.40847 8.49383 8.69384 8.82426 9.09760 9.96359 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037645 B = 0.003698 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.611220 B = 7570.449208 C = 7887.115195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.445 4.445 8 H 0.084 0.916 9 C 0.129 3.871 10 C -0.183 4.183 11 C -0.035 4.035 12 C -0.279 4.279 13 C 0.579 3.421 14 O -0.574 6.574 15 N -0.716 5.716 16 C 0.132 3.868 17 H 0.122 0.878 18 C 0.073 3.927 19 O -0.564 6.564 20 C 0.512 3.488 21 N -0.860 5.860 22 O -0.519 6.519 23 C -0.046 4.046 24 C -0.235 4.235 25 H 0.287 0.713 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.406 0.594 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.382 0.618 32 H 0.395 0.605 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -16.322 -3.255 16.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.126 3.874 10 C -0.202 4.202 11 C -0.054 4.054 12 C -0.284 4.284 13 C 0.374 3.626 14 O -0.456 6.456 15 N -0.369 5.369 16 C 0.021 3.979 17 H 0.140 0.860 18 C -0.006 4.006 19 O -0.369 6.369 20 C 0.295 3.705 21 N -0.425 5.425 22 O -0.392 6.392 23 C -0.065 4.065 24 C -0.255 4.255 25 H 0.099 0.901 26 H 0.139 0.861 27 H 0.118 0.882 28 H 0.242 0.758 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.230 0.770 32 H 0.223 0.777 33 H 0.229 0.771 34 H 0.108 0.892 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.390 -14.965 -3.123 15.293 hybrid contribution 0.703 -0.269 0.197 0.778 sum 1.093 -15.234 -2.926 15.551 Atomic orbital electron populations 1.69753 1.07917 1.30177 1.31360 1.26104 0.94791 1.01859 0.92016 0.86264 0.80177 0.79558 0.80239 1.18505 1.20067 1.18718 1.19798 0.98356 0.91256 1.37825 0.89795 1.17778 0.90450 0.92091 0.87111 1.21001 1.00057 0.96945 1.02236 1.20470 0.97009 0.91521 0.96433 1.18829 1.03728 0.91574 1.14244 1.18617 0.82619 0.83280 0.78051 1.90618 1.28097 1.87297 1.39548 1.45527 1.33395 1.04129 1.53863 1.20808 0.91432 0.86136 0.99486 0.86017 1.22399 0.97656 0.96000 0.84498 1.86607 1.67191 1.57389 1.25757 1.21066 0.83498 0.80505 0.85471 1.43830 1.34931 1.27128 1.36652 1.90769 1.70570 1.45075 1.32776 1.20372 0.94152 0.96627 0.95387 1.20659 1.04480 0.92751 1.07573 0.90130 0.86149 0.88202 0.75781 0.92006 0.91462 0.77016 0.77728 0.77131 0.89218 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.43 10.95 55.56 0.61 -18.83 16 2 C 0.07 1.79 5.14 -17.31 -0.09 1.70 16 3 Si 0.91 17.81 29.60 -169.99 -5.03 12.78 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.44 -11.36 9.04 -37.75 -0.34 -11.71 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.13 3.40 5.58 -106.80 -0.60 2.80 16 10 C -0.18 -4.86 8.64 -39.27 -0.34 -5.20 16 11 C -0.03 -0.90 9.52 -39.61 -0.38 -1.28 16 12 C -0.28 -6.79 5.89 -104.73 -0.62 -7.40 16 13 C 0.58 13.13 7.59 -12.42 -0.09 13.04 16 14 O -0.57 -14.32 15.98 5.29 0.08 -14.24 16 15 N -0.72 -12.84 4.54 -55.95 -0.25 -13.09 16 16 C 0.13 1.84 2.79 -69.09 -0.19 1.64 16 17 H 0.12 1.62 7.58 -51.93 -0.39 1.22 16 18 C 0.07 0.63 6.65 37.15 0.25 0.88 16 19 O -0.56 -5.47 12.87 -35.23 -0.45 -5.93 16 20 C 0.51 8.09 6.98 -10.98 -0.08 8.01 16 21 N -0.86 -8.63 8.78 31.22 0.27 -8.36 16 22 O -0.52 -11.27 17.16 5.56 0.10 -11.17 16 23 C -0.05 -1.05 9.47 -39.61 -0.38 -1.43 16 24 C -0.24 -5.68 9.73 -39.27 -0.38 -6.06 16 25 H 0.29 6.56 8.29 -40.82 -0.34 6.23 16 26 H 0.12 3.24 6.15 -52.49 -0.32 2.92 16 27 H 0.10 2.52 7.63 -52.49 -0.40 2.12 16 28 H 0.41 6.82 6.38 -40.82 -0.26 6.56 16 29 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.38 1.71 9.12 45.56 0.42 2.12 16 32 H 0.40 2.37 8.35 -40.82 -0.34 2.03 16 33 H 0.40 3.68 8.93 -40.82 -0.36 3.32 16 34 H 0.09 1.72 6.37 -52.49 -0.33 1.38 16 35 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -36.03 308.84 -6.05 -42.08 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -2.80 Total: 17.10 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.23 Total: -5.00 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.63 Total: -40.27 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.27 Total: -31.34 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.03 -6.05 -42.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328505661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.312 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds