Wall clock time and date at job start Mon Mar 30 2020 23:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86794 * 119.99739 * 2 1 4 4 H 1.48506 * 109.47002 * 239.99736 * 3 2 1 5 5 H 1.48498 * 109.47634 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47267 * 120.00308 * 3 2 1 7 7 C 1.40225 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00159 * 197.87704 * 7 2 1 9 9 C 1.41113 * 119.99501 * 17.87474 * 7 2 1 10 10 C 1.40888 * 120.11022 * 24.64249 * 9 7 2 11 11 C 1.36310 * 119.89369 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.10924 * 0.25762 * 11 10 9 13 13 C 1.47636 * 119.89616 * 179.74696 * 12 11 10 14 14 O 1.21589 * 120.00121 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00414 * 179.97438 * 13 12 11 16 16 C 1.46490 * 120.00427 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.47534 * 34.99736 * 16 15 13 18 18 C 1.52994 * 109.47471 * 155.00252 * 16 15 13 19 19 O 1.42899 * 109.47440 * 64.99343 * 18 16 15 20 20 C 1.50709 * 109.46902 * 275.00045 * 16 15 13 21 21 N 1.34777 * 119.99498 * 179.97438 * 20 16 15 22 22 O 1.21276 * 120.00382 * 359.97438 * 20 16 15 23 23 C 1.40009 * 120.20476 * 359.48349 * 12 11 10 24 24 C 1.36318 * 120.11027 * 0.51595 * 23 12 11 25 25 H 0.97002 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.04650 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.94466 * 179.97438 * 11 10 9 28 28 H 0.97003 * 119.99241 * 0.02562 * 15 13 12 29 29 H 1.09000 * 109.47975 * 185.00064 * 18 16 15 30 30 H 1.09002 * 109.47067 * 305.00101 * 18 16 15 31 31 H 0.96699 * 114.00152 * 180.02562 * 19 18 16 32 32 H 0.96999 * 120.00671 * 0.02562 * 21 20 16 33 33 H 0.97008 * 119.99561 * 179.97438 * 21 20 16 34 34 H 1.08002 * 119.94487 * 180.25903 * 23 12 11 35 35 H 1.07999 * 120.05333 * 179.72150 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7465 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0077 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2877 9 6 1.3531 -2.4071 -0.3740 10 6 0.2242 -2.3594 -1.2156 11 6 -0.4050 -3.5142 -1.5742 12 6 0.0656 -4.7460 -1.1034 13 6 -0.6228 -5.9934 -1.4903 14 8 -1.5971 -5.9500 -2.2163 15 7 -0.1713 -7.1803 -1.0387 16 6 -0.8547 -8.4180 -1.4222 17 1 -1.2271 -8.3264 -2.4424 18 6 0.1267 -9.5888 -1.3407 19 8 0.5256 -9.7824 0.0178 20 6 -2.0098 -8.6647 -0.4861 21 7 -2.7878 -9.7532 -0.6483 22 8 -2.2392 -7.8838 0.4130 23 6 1.1904 -4.7988 -0.2713 24 6 1.8263 -3.6493 0.0928 25 1 -0.4850 0.8400 0.0004 26 1 -0.1425 -1.4094 -1.5752 27 1 -1.2707 -3.4787 -2.2189 28 1 0.6058 -7.2148 -0.4592 29 1 -0.3556 -10.4938 -1.7102 30 1 1.0042 -9.3704 -1.9493 31 1 1.1496 -10.5102 0.1446 32 1 -2.6042 -10.3780 -1.3671 33 1 -3.5311 -9.9122 -0.0455 34 1 1.5523 -5.7515 0.0861 35 1 2.6911 -3.6908 0.7384 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328505661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:22 Heat of formation + Delta-G solvation = -141.263696 kcal Electronic energy + Delta-G solvation = -21005.739526 eV Core-core repulsion = 17580.736525 eV Total energy + Delta-G solvation = -3425.003001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38954 -40.08227 -38.81024 -37.83721 -35.70497 -35.30963 -34.69650 -32.15828 -31.52822 -30.19350 -27.58306 -25.02870 -23.87926 -22.82724 -21.55434 -21.21407 -19.38446 -19.01686 -18.53924 -18.37073 -17.57481 -17.10674 -16.76699 -15.97576 -15.74109 -15.61339 -15.43172 -15.22364 -14.89978 -14.66109 -14.40760 -14.02577 -13.69657 -13.42673 -13.22224 -12.82570 -12.65578 -12.61155 -12.34477 -11.80318 -11.48969 -11.36395 -11.11534 -11.00474 -10.73348 -10.64722 -10.09781 -9.57777 -9.42481 -8.78745 -6.48691 0.43125 1.14667 1.38082 1.44615 1.53006 1.65652 2.01001 2.15908 2.26872 2.63983 2.84242 3.23137 3.68929 3.84067 4.00575 4.22257 4.30461 4.38500 4.40922 4.56824 4.66525 4.96019 5.01122 5.19979 5.25263 5.42270 5.58172 5.78113 5.89674 5.94313 6.00848 6.19516 6.45907 6.54937 6.65694 6.76024 6.88884 6.93390 7.35280 7.41438 8.16467 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037645 B = 0.003698 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.611220 B = 7570.449208 C = 7887.115195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.472 4.472 8 H 0.094 0.906 9 C 0.101 3.899 10 C -0.203 4.203 11 C -0.050 4.050 12 C -0.295 4.295 13 C 0.576 3.424 14 O -0.605 6.605 15 N -0.702 5.702 16 C 0.119 3.881 17 H 0.130 0.870 18 C 0.082 3.918 19 O -0.591 6.591 20 C 0.505 3.495 21 N -0.831 5.831 22 O -0.591 6.591 23 C -0.037 4.037 24 C -0.246 4.246 25 H 0.296 0.704 26 H 0.106 0.894 27 H 0.091 0.909 28 H 0.411 0.589 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.405 0.595 32 H 0.418 0.582 33 H 0.405 0.595 34 H 0.129 0.871 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -18.202 -3.262 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.499 4.499 8 H 0.112 0.888 9 C 0.098 3.902 10 C -0.222 4.222 11 C -0.069 4.069 12 C -0.300 4.300 13 C 0.370 3.630 14 O -0.490 6.490 15 N -0.353 5.353 16 C 0.010 3.990 17 H 0.147 0.853 18 C 0.004 3.996 19 O -0.401 6.401 20 C 0.289 3.711 21 N -0.396 5.396 22 O -0.470 6.470 23 C -0.056 4.056 24 C -0.266 4.266 25 H 0.107 0.893 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.249 0.751 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.257 0.743 32 H 0.250 0.750 33 H 0.237 0.763 34 H 0.146 0.854 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.872 -16.978 -3.152 17.370 hybrid contribution 0.177 0.139 0.190 0.295 sum 2.049 -16.839 -2.962 17.220 Atomic orbital electron populations 1.69815 1.09682 1.31676 1.31666 1.27080 0.95453 1.05367 0.90718 0.85091 0.78700 0.74506 0.80537 1.18006 1.19261 1.17671 1.20154 0.99005 0.92022 1.38717 0.88762 1.18150 0.90757 0.93687 0.87625 1.20940 1.01175 0.96561 1.03518 1.20543 0.97034 0.92453 0.96897 1.19165 1.04431 0.92039 1.14353 1.18427 0.82182 0.84305 0.78076 1.90586 1.29319 1.87958 1.41096 1.45346 1.33137 1.04256 1.52583 1.21306 0.92358 0.86234 0.99094 0.85296 1.22445 0.97395 0.95170 0.84623 1.86546 1.68243 1.58986 1.26282 1.21436 0.84112 0.80778 0.84771 1.43549 1.33612 1.25659 1.36788 1.90744 1.72568 1.47778 1.35874 1.20671 0.92955 0.97954 0.94007 1.20937 1.05272 0.92466 1.07875 0.89337 0.87637 0.89064 0.75110 0.87426 0.89684 0.74306 0.74967 0.76334 0.85372 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.76 10.95 21.87 0.24 -41.52 16 2 C 0.03 1.58 5.14 85.35 0.44 2.02 16 3 Si 0.99 36.21 29.60 68.60 2.03 38.24 16 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 5 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 6 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 7 C -0.47 -24.44 9.04 23.46 0.21 -24.23 16 8 H 0.09 4.52 7.91 -2.91 -0.02 4.50 16 9 C 0.10 5.46 5.58 -21.28 -0.12 5.34 16 10 C -0.20 -11.27 8.64 22.47 0.19 -11.08 16 11 C -0.05 -2.69 9.52 22.25 0.21 -2.47 16 12 C -0.30 -14.62 5.89 -19.94 -0.12 -14.74 16 13 C 0.58 26.32 7.59 86.72 0.66 26.98 16 14 O -0.61 -30.81 15.98 -4.00 -0.06 -30.88 16 15 N -0.70 -24.35 4.54 -449.18 -2.04 -26.39 16 16 C 0.12 3.07 2.79 44.25 0.12 3.19 16 17 H 0.13 3.15 7.58 -2.39 -0.02 3.13 16 18 C 0.08 1.07 6.65 71.98 0.48 1.55 16 19 O -0.59 -9.42 12.87 -148.98 -1.92 -11.34 16 20 C 0.51 15.26 6.98 87.66 0.61 15.87 16 21 N -0.83 -14.56 8.78 -173.53 -1.52 -16.09 16 22 O -0.59 -25.82 17.16 -3.02 -0.05 -25.87 16 23 C -0.04 -1.66 9.47 22.25 0.21 -1.45 16 24 C -0.25 -11.89 9.73 22.47 0.22 -11.67 16 25 H 0.30 13.78 8.29 -92.71 -0.77 13.01 16 26 H 0.11 6.04 6.15 -2.91 -0.02 6.02 16 27 H 0.09 4.92 7.63 -2.91 -0.02 4.90 16 28 H 0.41 13.07 6.38 -92.71 -0.59 12.48 16 29 H 0.11 0.47 7.71 -2.39 -0.02 0.45 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 31 H 0.41 2.05 9.12 -74.06 -0.68 1.38 16 32 H 0.42 3.40 8.35 -92.71 -0.77 2.63 16 33 H 0.41 6.63 8.93 -92.70 -0.83 5.80 16 34 H 0.13 4.63 6.37 -2.91 -0.02 4.61 16 35 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -82.94 308.84 -1.88 -84.82 By element: Atomic # 1 Polarization: 41.38 SS G_CDS: -1.68 Total: 39.70 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 3.12 Total: -10.69 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -3.32 Total: -83.99 kcal Atomic # 8 Polarization: -66.05 SS G_CDS: -2.03 Total: -68.08 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -82.94 -1.88 -84.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328505661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.447 kcal (2) G-P(sol) polarization free energy of solvation -82.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds