Wall clock time and date at job start Mon Mar 30 2020 23:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.50693 * 109.47168 * 179.97438 * 19 17 16 21 21 N 1.34778 * 119.99987 * 179.97438 * 20 19 17 22 22 O 1.21281 * 120.00106 * 0.02562 * 20 19 17 23 23 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 27 27 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 28 28 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 29 29 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 32 32 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 33 33 H 0.96997 * 120.00059 * 0.02562 * 21 20 19 34 34 H 0.96999 * 119.99878 * 180.02562 * 21 20 19 35 35 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5954 -0.0095 19 6 0.4297 -9.5670 -2.3664 20 6 -0.2567 -10.9020 -2.2344 21 7 -0.5704 -11.6104 -3.3373 22 8 -0.5278 -11.3386 -1.1358 23 6 1.4365 -4.7345 0.2253 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5471 0.1902 27 1 4.1533 -6.7247 0.4045 28 1 2.1300 -7.9004 1.0433 29 1 0.5456 -7.0924 0.9734 30 1 1.5547 -7.3009 -1.6561 31 1 -0.1994 -8.8900 -2.9444 32 1 1.3848 -9.6986 -2.8749 33 1 -0.3540 -11.2611 -4.2159 34 1 -1.0126 -12.4696 -3.2523 35 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330359726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:30 Heat of formation + Delta-G solvation = -78.406284 kcal Electronic energy + Delta-G solvation = -20187.080039 eV Core-core repulsion = 16764.802741 eV Total energy + Delta-G solvation = -3422.277299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27583 -39.22922 -38.46193 -36.77080 -34.46320 -33.81823 -32.35745 -31.38519 -30.03732 -29.06424 -25.91652 -25.06911 -21.85643 -21.64023 -20.80044 -20.16822 -18.09891 -17.54532 -17.36465 -17.04961 -16.05752 -15.92888 -15.49298 -15.20040 -14.83219 -14.41016 -14.20554 -13.75859 -13.60972 -13.54679 -13.29409 -12.79790 -12.44099 -12.39791 -11.92738 -11.66681 -11.40085 -10.96780 -10.83208 -10.71016 -10.47955 -10.31054 -9.87988 -9.53372 -9.42388 -8.93667 -8.90868 -8.25538 -7.34897 -6.51149 -4.10673 1.87832 2.24854 2.45836 2.75002 2.98694 3.08659 3.10010 3.15373 3.62696 3.90805 4.41133 4.52450 4.79696 4.92780 4.95447 5.04889 5.09712 5.28414 5.53241 5.74778 5.83659 5.94531 6.06166 6.23718 6.50951 6.54016 6.54929 6.80010 6.97902 7.06010 7.17507 7.25414 7.33772 7.58243 7.69927 7.93124 8.08695 8.34987 8.94365 9.62978 10.66687 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031095 B = 0.003006 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.258955 B = 9312.958560 C = 9782.810673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.151 3.849 11 C -0.226 4.226 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.072 4.072 15 C 0.169 3.831 16 N -0.723 5.723 17 C 0.509 3.491 18 O -0.502 6.502 19 C -0.168 4.168 20 C 0.515 3.485 21 N -0.862 5.862 22 O -0.497 6.497 23 C -0.171 4.171 24 H 0.270 0.730 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.402 0.598 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.399 0.601 34 H 0.402 0.598 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -14.677 -8.976 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.080 6.080 10 C 0.097 3.903 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.215 4.215 14 C -0.073 4.073 15 C 0.046 3.954 16 N -0.377 5.377 17 C 0.292 3.708 18 O -0.375 6.375 19 C -0.211 4.211 20 C 0.297 3.703 21 N -0.428 5.428 22 O -0.368 6.368 23 C -0.191 4.191 24 H 0.080 0.920 25 H 0.145 0.855 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.236 0.764 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.227 0.773 34 H 0.232 0.768 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.163 -15.032 -7.411 17.056 hybrid contribution 0.659 1.069 -0.972 1.588 sum 3.822 -13.963 -8.383 16.729 Atomic orbital electron populations 1.70048 1.05974 1.27667 1.45850 1.25304 0.95852 0.98875 0.96471 0.85639 0.79115 0.80315 0.78309 1.19093 1.20121 1.20088 1.21372 0.91817 0.80747 1.52976 0.88983 1.83982 1.34304 1.11414 1.78303 1.19326 0.90255 0.88066 0.92681 1.21251 0.93850 0.99121 1.10317 1.20746 0.98566 0.92263 0.97876 1.20483 0.93352 0.97109 1.10522 1.19278 0.93479 0.92858 1.01655 1.20131 1.00109 0.91288 0.83826 1.46098 1.61458 1.20314 1.09808 1.19919 0.78787 0.81478 0.90617 1.90858 1.48471 1.59140 1.39049 1.21599 1.04235 0.96694 0.98561 1.20035 0.79313 0.86304 0.84599 1.43874 1.65283 1.24750 1.08885 1.90918 1.50914 1.69580 1.25419 1.20092 0.99456 0.89832 1.09758 0.91990 0.85469 0.87296 0.87495 0.90963 0.90859 0.76410 0.85906 0.86050 0.77299 0.76760 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 7 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.18 -4.87 9.76 0.05 0.00 -4.87 16 10 C 0.15 3.46 6.65 -39.11 -0.26 3.20 16 11 C -0.23 -4.64 9.17 -39.39 -0.36 -5.00 16 12 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 13 C -0.20 -3.12 9.70 -39.54 -0.38 -3.50 16 14 C -0.07 -1.19 5.25 -104.65 -0.55 -1.74 16 15 C 0.17 2.48 5.80 -5.19 -0.03 2.45 16 16 N -0.72 -8.96 5.55 -61.47 -0.34 -9.30 16 17 C 0.51 6.79 7.82 -10.98 -0.09 6.71 16 18 O -0.50 -9.34 14.18 -18.96 -0.27 -9.61 16 19 C -0.17 -1.37 6.18 -29.04 -0.18 -1.55 16 20 C 0.52 5.49 8.09 -10.99 -0.09 5.40 16 21 N -0.86 -4.93 8.87 31.22 0.28 -4.66 16 22 O -0.50 -8.34 15.02 -18.96 -0.28 -8.63 16 23 C -0.17 -3.41 9.65 -39.40 -0.38 -3.79 16 24 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 26 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 29 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 30 H 0.40 4.10 8.46 -40.82 -0.35 3.76 16 31 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.40 0.86 8.83 -40.82 -0.36 0.50 16 34 H 0.40 2.09 8.93 -40.82 -0.36 1.72 16 35 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -36.64 313.25 -6.41 -43.05 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.73 Total: 7.23 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.52 Total: -8.92 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.69 Total: -37.95 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.55 Total: -23.11 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.64 -6.41 -43.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330359726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.359 kcal (2) G-P(sol) polarization free energy of solvation -36.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds