Wall clock time and date at job start Mon Mar 30 2020 23:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47132 * 269.98022 * 15 14 13 17 17 C 1.34777 * 119.99835 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00106 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99908 * 179.97438 * 17 16 15 20 20 C 1.50693 * 109.47168 * 179.97438 * 19 17 16 21 21 N 1.34778 * 119.99987 * 179.97438 * 20 19 17 22 22 O 1.21281 * 120.00106 * 0.02562 * 20 19 17 23 23 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 27 27 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 28 28 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 29 29 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 30 30 H 0.97004 * 120.00059 * 359.97438 * 16 15 14 31 31 H 1.09004 * 109.47112 * 300.00495 * 19 17 16 32 32 H 1.09005 * 109.46849 * 59.99788 * 19 17 16 33 33 H 0.96997 * 120.00059 * 0.02562 * 21 20 19 34 34 H 0.96999 * 119.99878 * 180.02562 * 21 20 19 35 35 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2715 -7.7888 -0.8670 17 6 0.6661 -8.9860 -0.9961 18 8 0.3108 -9.5954 -0.0095 19 6 0.4297 -9.5670 -2.3664 20 6 -0.2567 -10.9020 -2.2344 21 7 -0.5704 -11.6104 -3.3373 22 8 -0.5278 -11.3386 -1.1358 23 6 1.4365 -4.7345 0.2253 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5471 0.1902 27 1 4.1533 -6.7247 0.4045 28 1 2.1300 -7.9004 1.0433 29 1 0.5456 -7.0924 0.9734 30 1 1.5547 -7.3009 -1.6561 31 1 -0.1994 -8.8900 -2.9444 32 1 1.3848 -9.6986 -2.8749 33 1 -0.3540 -11.2611 -4.2159 34 1 -1.0126 -12.4696 -3.2523 35 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330359726.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:30 Heat of formation + Delta-G solvation = -108.064825 kcal Electronic energy + Delta-G solvation = -20188.366130 eV Core-core repulsion = 16764.802741 eV Total energy + Delta-G solvation = -3423.563390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28257 -40.76649 -39.54507 -38.37555 -35.69774 -34.59103 -34.27396 -32.56503 -31.17533 -30.53088 -27.54172 -26.66723 -23.27331 -22.80033 -22.22430 -21.10703 -19.62224 -18.93835 -18.36037 -18.14875 -17.00328 -16.92994 -16.71551 -16.53225 -16.35949 -16.05546 -15.49178 -15.42364 -14.90645 -14.51230 -14.44357 -14.27075 -13.90128 -13.73028 -13.40149 -13.01985 -12.82599 -12.54819 -12.34769 -12.26269 -12.07784 -11.26815 -11.19113 -10.81950 -10.59523 -10.55576 -10.06269 -9.73265 -9.02198 -8.46475 -6.14875 0.39752 0.71723 1.36727 1.44434 1.54703 1.66579 1.78148 2.10662 2.18057 2.77303 2.92220 3.16889 3.41976 3.67492 3.84920 4.10476 4.21239 4.31551 4.39624 4.46541 4.50562 4.54691 4.72048 4.76019 5.03072 5.13076 5.27035 5.42718 5.63792 5.71950 5.73375 5.98592 6.02639 6.17816 6.53832 6.62952 6.98627 7.31888 7.50529 7.79114 8.76882 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031095 B = 0.003006 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.258955 B = 9312.958560 C = 9782.810673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.411 4.411 8 H 0.104 0.896 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.234 4.234 12 C -0.069 4.069 13 C -0.168 4.168 14 C -0.056 4.056 15 C 0.174 3.826 16 N -0.713 5.713 17 C 0.503 3.497 18 O -0.559 6.559 19 C -0.156 4.156 20 C 0.508 3.492 21 N -0.836 5.836 22 O -0.570 6.570 23 C -0.182 4.182 24 H 0.272 0.728 25 H 0.121 0.879 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.415 0.585 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.420 0.580 34 H 0.406 0.594 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 -16.027 -10.696 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.173 1.173 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.121 0.879 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.254 4.254 12 C -0.086 4.086 13 C -0.187 4.187 14 C -0.057 4.057 15 C 0.050 3.950 16 N -0.367 5.367 17 C 0.289 3.711 18 O -0.436 6.436 19 C -0.198 4.198 20 C 0.292 3.708 21 N -0.402 5.402 22 O -0.447 6.447 23 C -0.202 4.202 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.252 0.748 31 H 0.176 0.824 32 H 0.184 0.816 33 H 0.252 0.748 34 H 0.237 0.763 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.075 -16.422 -9.232 19.795 hybrid contribution -0.128 1.120 -0.472 1.222 sum 5.948 -15.302 -9.704 19.071 Atomic orbital electron populations 1.70196 1.08063 1.28695 1.49013 1.26582 0.96814 1.02767 0.95949 0.84529 0.78354 0.74903 0.78439 1.17256 1.19373 1.19681 1.21862 0.92550 0.81331 1.52965 0.87863 1.83948 1.35985 1.12581 1.81446 1.19845 0.91641 0.87788 0.94431 1.21382 0.92979 1.00449 1.10568 1.21160 1.00435 0.91086 0.95963 1.20989 0.92985 0.98280 1.06409 1.19424 0.93975 0.92418 0.99886 1.19962 0.99346 0.90351 0.85311 1.45963 1.61176 1.20270 1.09306 1.20806 0.77305 0.80878 0.92109 1.90850 1.50691 1.60625 1.41479 1.21657 1.06943 0.95525 0.95655 1.20520 0.78733 0.87145 0.84390 1.43663 1.63407 1.24288 1.08844 1.90902 1.54178 1.71378 1.28260 1.20210 0.99378 0.90183 1.10397 0.91906 0.86171 0.83311 0.83420 0.89991 0.92512 0.74794 0.82366 0.81593 0.74790 0.76269 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 13.67 21.61 0.30 -55.53 16 2 C -0.02 -1.32 5.49 84.83 0.47 -0.86 16 3 Si 1.02 41.84 29.55 68.60 2.03 43.86 16 4 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.41 -23.22 9.49 67.92 0.64 -22.58 16 8 H 0.10 5.31 5.21 -2.91 -0.02 5.29 16 9 O -0.23 -13.60 9.76 -22.74 -0.22 -13.82 16 10 C 0.11 5.34 6.65 22.58 0.15 5.49 16 11 C -0.23 -9.44 9.17 22.39 0.21 -9.23 16 12 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 13 C -0.17 -4.61 9.70 22.30 0.22 -4.39 16 14 C -0.06 -1.75 5.25 -19.88 -0.10 -1.86 16 15 C 0.17 4.80 5.80 85.63 0.50 5.30 16 16 N -0.71 -15.90 5.55 -466.79 -2.59 -18.49 16 17 C 0.50 12.51 7.82 87.66 0.69 13.19 16 18 O -0.56 -20.86 14.18 20.42 0.29 -20.57 16 19 C -0.16 -1.98 6.18 29.10 0.18 -1.80 16 20 C 0.51 9.87 8.09 87.65 0.71 10.58 16 21 N -0.84 -7.25 8.87 -173.54 -1.54 -8.79 16 22 O -0.57 -19.31 15.02 20.41 0.31 -19.01 16 23 C -0.18 -7.33 9.65 22.39 0.22 -7.11 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 26 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 27 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 28 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 29 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 30 H 0.42 7.04 8.46 -92.71 -0.78 6.26 16 31 H 0.16 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.17 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.42 0.13 8.83 -92.71 -0.82 -0.69 16 34 H 0.41 3.38 8.93 -92.71 -0.83 2.55 16 35 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -88.58 313.25 1.40 -87.19 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -1.26 Total: 20.29 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 4.09 Total: -15.13 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -3.83 Total: -82.81 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: 0.37 Total: -53.40 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -88.58 1.40 -87.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330359726.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.877 kcal (2) G-P(sol) polarization free energy of solvation -88.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds