Wall clock time and date at job start Tue Mar 31 2020 00:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 110.63787 * 300.42070 * 9 7 2 11 11 C 1.55153 * 110.72079 * 177.27948 * 9 7 2 12 12 C 1.54905 * 101.58432 * 206.13591 * 11 9 7 13 13 N 1.47419 * 104.83258 * 37.00633 * 12 11 9 14 14 C 1.34781 * 125.64850 * 155.91019 * 13 12 11 15 15 O 1.21401 * 119.99754 * 179.97438 * 14 13 12 16 16 C 1.49093 * 119.99926 * 359.97438 * 14 13 12 17 17 O 1.21609 * 119.99967 * 359.97438 * 16 14 13 18 18 C 1.41530 * 119.99957 * 180.02562 * 16 14 13 19 19 C 1.38805 * 126.31509 * 179.97438 * 18 16 14 20 20 C 1.39383 * 106.92332 * 179.97438 * 19 18 16 21 21 C 1.35869 * 107.92422 * 359.97438 * 20 19 18 22 22 N 1.34884 * 109.07817 * 359.73388 * 21 20 19 23 23 H 0.97003 * 125.64766 * 180.30605 * 22 21 20 24 24 C 1.47319 * 108.73704 * 335.71934 * 13 12 11 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 0.96699 * 114.00083 * 59.29892 * 10 9 7 27 27 H 1.09004 * 111.00253 * 324.20924 * 11 9 7 28 28 H 1.09005 * 111.00483 * 88.05560 * 11 9 7 29 29 H 1.08994 * 110.37244 * 155.84858 * 12 11 9 30 30 H 1.09008 * 110.36329 * 278.17306 * 12 11 9 31 31 H 1.07997 * 126.53582 * 359.97438 * 19 18 16 32 32 H 1.08000 * 126.03937 * 179.97438 * 20 19 18 33 33 H 1.07996 * 125.46436 * 180.02562 * 21 20 19 34 34 H 1.09004 * 110.06766 * 241.86643 * 24 13 12 35 35 H 1.08999 * 109.85130 * 120.60999 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4077 -2.5991 1.1440 11 6 2.2320 -3.6993 -0.0725 12 6 1.3499 -4.7854 -0.7371 13 7 0.5316 -4.0559 -1.7227 14 6 -0.0315 -4.5894 -2.8250 15 8 -0.6886 -3.8910 -3.5695 16 6 0.1527 -6.0372 -3.1299 17 8 0.8113 -6.7366 -2.3843 18 6 -0.4381 -6.5972 -4.2876 19 6 -0.3518 -7.9210 -4.6962 20 6 -1.0788 -8.0283 -5.8806 21 6 -1.5866 -6.8022 -6.1720 22 7 -1.2115 -5.9304 -5.2135 23 1 -1.4453 -4.9895 -5.1823 24 6 0.4269 -2.6481 -1.3017 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2492 -1.8928 1.2125 27 1 3.0959 -3.4634 -0.6939 28 1 2.5432 -4.0059 0.9262 29 1 1.9731 -5.5273 -1.2362 30 1 0.7117 -5.2632 0.0064 31 1 0.1777 -8.7161 -4.1925 32 1 -1.2146 -8.9272 -6.4636 33 1 -2.1970 -6.5648 -7.0307 34 1 -0.6150 -2.3914 -1.1102 35 1 0.8344 -1.9987 -2.0765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332412433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:24 Heat of formation + Delta-G solvation = -62.920217 kcal Electronic energy + Delta-G solvation = -21646.475270 eV Core-core repulsion = 18224.869497 eV Total energy + Delta-G solvation = -3421.605772 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.50076 -39.83011 -38.19200 -37.32424 -34.39141 -32.26845 -31.17171 -30.23889 -29.90802 -28.01239 -26.13388 -24.48655 -22.59306 -21.21932 -20.21206 -19.81070 -19.51599 -17.58795 -17.26813 -16.62885 -15.87227 -15.64394 -15.15401 -14.56886 -14.44491 -14.34126 -13.82781 -13.43837 -13.10365 -13.05493 -12.86560 -12.74892 -12.52726 -12.39973 -11.82227 -11.59458 -11.15721 -11.11075 -10.84836 -10.65249 -10.51641 -10.22885 -9.41151 -9.19132 -9.12329 -8.72840 -8.39889 -8.38695 -8.11946 -6.36119 -4.44574 0.68142 2.27832 2.74950 3.03605 3.16145 3.24906 3.28452 3.30537 3.59067 4.20776 4.36609 4.92148 4.95649 5.04758 5.20166 5.36507 5.41722 5.75997 5.79257 5.90684 5.97682 6.01408 6.16527 6.43481 6.53705 6.68113 6.72068 6.75507 6.80729 7.12032 7.21414 7.32089 7.40651 7.66276 7.89003 7.95879 8.27383 8.59713 9.23594 9.33530 10.71834 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032020 B = 0.004406 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.249344 B = 6352.973659 C = 6846.830558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.247 3.753 10 O -0.583 6.583 11 C -0.120 4.120 12 C 0.095 3.905 13 N -0.573 5.573 14 C 0.482 3.518 15 O -0.548 6.548 16 C 0.414 3.586 17 O -0.429 6.429 18 C -0.086 4.086 19 C -0.092 4.092 20 C -0.226 4.226 21 C 0.038 3.962 22 N -0.506 5.506 23 H 0.434 0.566 24 C 0.096 3.904 25 H 0.270 0.730 26 H 0.384 0.616 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.173 0.827 34 H 0.072 0.928 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -11.300 -8.945 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.206 3.794 10 O -0.393 6.393 11 C -0.158 4.158 12 C -0.027 4.027 13 N -0.304 5.304 14 C 0.267 3.733 15 O -0.429 6.429 16 C 0.291 3.709 17 O -0.303 6.303 18 C -0.198 4.198 19 C -0.119 4.119 20 C -0.249 4.249 21 C -0.103 4.103 22 N -0.104 5.104 23 H 0.277 0.723 24 C -0.024 4.024 25 H 0.080 0.920 26 H 0.235 0.765 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.190 0.810 34 H 0.090 0.910 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.716 -11.507 -8.772 14.571 hybrid contribution -0.218 1.933 -0.257 1.963 sum -1.934 -9.574 -9.029 13.301 Atomic orbital electron populations 1.69650 1.06046 1.27938 1.49911 1.25089 0.95071 0.99872 0.93287 0.86321 0.80099 0.82557 0.77794 1.19518 1.20765 1.20664 1.21570 0.93831 0.89969 1.52132 0.91297 1.19517 0.86215 0.92380 0.81254 1.86112 1.51686 1.54819 1.46648 1.22824 0.97563 0.94861 1.00560 1.22689 0.93727 0.95331 0.90931 1.48951 1.46892 1.13294 1.21258 1.20394 0.81691 0.89195 0.82014 1.90534 1.41477 1.62149 1.48739 1.20102 0.78598 0.88390 0.83845 1.90619 1.30887 1.62703 1.46078 1.19599 1.08919 0.93986 0.97264 1.21617 0.99933 0.93936 0.96392 1.20922 1.06213 0.97710 1.00092 1.22245 1.02726 0.90295 0.95067 1.42473 1.37024 1.12868 1.18008 0.72257 1.23329 1.02251 0.77253 0.99600 0.91960 0.76500 0.90404 0.90140 0.89635 0.91087 0.83292 0.83796 0.81017 0.91008 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.35 10.96 55.43 0.61 -22.74 16 2 C 0.07 1.79 5.27 -17.82 -0.09 1.69 16 3 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -13.82 8.11 -34.44 -0.28 -14.09 16 8 H 0.07 1.75 7.77 -52.49 -0.41 1.34 16 9 C 0.25 5.91 0.85 -89.94 -0.08 5.84 16 10 O -0.58 -14.56 13.08 -35.23 -0.46 -15.02 16 11 C -0.12 -2.43 6.23 -24.59 -0.15 -2.58 16 12 C 0.10 1.81 6.05 -2.53 -0.02 1.80 16 13 N -0.57 -11.96 3.33 -170.93 -0.57 -12.52 16 14 C 0.48 9.49 7.88 -11.75 -0.09 9.39 16 15 O -0.55 -11.32 14.75 5.45 0.08 -11.24 16 16 C 0.41 7.08 6.97 -33.82 -0.24 6.84 16 17 O -0.43 -7.53 14.23 5.27 0.07 -7.45 16 18 C -0.09 -1.27 6.78 -83.70 -0.57 -1.84 16 19 C -0.09 -1.17 10.61 -38.95 -0.41 -1.58 16 20 C -0.23 -2.32 10.81 -40.00 -0.43 -2.75 16 21 C 0.04 0.38 11.87 -17.06 -0.20 0.17 16 22 N -0.51 -6.53 5.80 -10.55 -0.06 -6.59 16 23 H 0.43 5.73 6.70 -40.82 -0.27 5.46 16 24 C 0.10 2.28 5.39 -2.90 -0.02 2.27 16 25 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.38 9.79 7.24 45.56 0.33 10.12 16 27 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.09 1.50 6.15 -51.93 -0.32 1.18 16 30 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.07 1.83 8.00 -51.93 -0.42 1.41 16 35 H 0.07 1.85 7.81 -51.93 -0.41 1.45 16 LS Contribution 300.29 15.07 4.53 4.53 Total: -1.00 -28.49 300.29 -6.56 -35.05 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -3.16 Total: 15.76 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.58 Total: 5.15 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.02 Total: -41.86 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.31 Total: -33.71 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.49 -6.56 -35.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332412433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.873 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds