Wall clock time and date at job start Tue Mar 31 2020 00:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 110.63787 * 300.42070 * 9 7 2 11 11 C 1.55153 * 110.72079 * 177.27948 * 9 7 2 12 12 C 1.54905 * 101.58432 * 206.13591 * 11 9 7 13 13 N 1.47419 * 104.83258 * 37.00633 * 12 11 9 14 14 C 1.34781 * 125.64850 * 155.91019 * 13 12 11 15 15 O 1.21401 * 119.99754 * 179.97438 * 14 13 12 16 16 C 1.49093 * 119.99926 * 359.97438 * 14 13 12 17 17 O 1.21609 * 119.99967 * 359.97438 * 16 14 13 18 18 C 1.41530 * 119.99957 * 180.02562 * 16 14 13 19 19 C 1.38805 * 126.31509 * 179.97438 * 18 16 14 20 20 C 1.39383 * 106.92332 * 179.97438 * 19 18 16 21 21 C 1.35869 * 107.92422 * 359.97438 * 20 19 18 22 22 N 1.34884 * 109.07817 * 359.73388 * 21 20 19 23 23 H 0.97003 * 125.64766 * 180.30605 * 22 21 20 24 24 C 1.47319 * 108.73704 * 335.71934 * 13 12 11 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 0.96699 * 114.00083 * 59.29892 * 10 9 7 27 27 H 1.09004 * 111.00253 * 324.20924 * 11 9 7 28 28 H 1.09005 * 111.00483 * 88.05560 * 11 9 7 29 29 H 1.08994 * 110.37244 * 155.84858 * 12 11 9 30 30 H 1.09008 * 110.36329 * 278.17306 * 12 11 9 31 31 H 1.07997 * 126.53582 * 359.97438 * 19 18 16 32 32 H 1.08000 * 126.03937 * 179.97438 * 20 19 18 33 33 H 1.07996 * 125.46436 * 180.02562 * 21 20 19 34 34 H 1.09004 * 110.06766 * 241.86643 * 24 13 12 35 35 H 1.08999 * 109.85130 * 120.60999 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4077 -2.5991 1.1440 11 6 2.2320 -3.6993 -0.0725 12 6 1.3499 -4.7854 -0.7371 13 7 0.5316 -4.0559 -1.7227 14 6 -0.0315 -4.5894 -2.8250 15 8 -0.6886 -3.8910 -3.5695 16 6 0.1527 -6.0372 -3.1299 17 8 0.8113 -6.7366 -2.3843 18 6 -0.4381 -6.5972 -4.2876 19 6 -0.3518 -7.9210 -4.6962 20 6 -1.0788 -8.0283 -5.8806 21 6 -1.5866 -6.8022 -6.1720 22 7 -1.2115 -5.9304 -5.2135 23 1 -1.4453 -4.9895 -5.1823 24 6 0.4269 -2.6481 -1.3017 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2492 -1.8928 1.2125 27 1 3.0959 -3.4634 -0.6939 28 1 2.5432 -4.0059 0.9262 29 1 1.9731 -5.5273 -1.2362 30 1 0.7117 -5.2632 0.0064 31 1 0.1777 -8.7161 -4.1925 32 1 -1.2146 -8.9272 -6.4636 33 1 -2.1970 -6.5648 -7.0307 34 1 -0.6150 -2.3914 -1.1102 35 1 0.8344 -1.9987 -2.0765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332412433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:23 Heat of formation + Delta-G solvation = -83.357270 kcal Electronic energy + Delta-G solvation = -21647.361487 eV Core-core repulsion = 18224.869497 eV Total energy + Delta-G solvation = -3422.491990 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.57339 -41.23711 -39.63324 -38.99238 -36.19963 -34.25189 -32.09389 -31.94938 -30.96519 -29.79752 -27.79449 -26.02097 -24.12571 -22.35905 -21.51939 -21.13499 -20.89260 -19.19271 -18.86661 -18.15675 -17.48120 -17.08723 -16.88339 -16.25639 -15.77599 -15.61979 -14.90803 -14.87777 -14.81704 -14.71417 -14.33496 -14.12250 -13.69214 -13.52945 -13.46620 -13.27424 -12.91798 -12.68180 -12.57515 -12.38708 -12.27410 -12.11534 -11.24901 -10.78832 -10.57741 -10.32292 -10.04719 -9.84305 -9.31208 -8.31139 -6.46971 -0.55584 1.06778 1.38613 1.42535 1.53257 1.58733 1.84915 2.27691 2.31661 2.35603 2.88763 2.96085 3.72723 3.89477 3.99488 4.10186 4.26336 4.28513 4.35320 4.43346 4.54511 4.64627 4.87847 4.99232 5.03808 5.07015 5.21831 5.26428 5.39339 5.59705 5.69186 5.87573 5.96626 6.05764 6.28891 6.50114 6.60089 6.71604 7.23768 7.31973 8.75650 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.032020 B = 0.004406 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.249344 B = 6352.973659 C = 6846.830558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.114 4.114 12 C 0.104 3.896 13 N -0.584 5.584 14 C 0.475 3.525 15 O -0.562 6.562 16 C 0.420 3.580 17 O -0.445 6.445 18 C -0.132 4.132 19 C -0.082 4.082 20 C -0.228 4.228 21 C 0.065 3.935 22 N -0.518 5.518 23 H 0.430 0.570 24 C 0.115 3.885 25 H 0.272 0.728 26 H 0.378 0.622 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.217 0.783 34 H 0.043 0.957 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 -12.759 -10.638 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.173 4.173 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.596 4.596 8 H 0.086 0.914 9 C 0.192 3.808 10 O -0.396 6.396 11 C -0.152 4.152 12 C -0.017 4.017 13 N -0.316 5.316 14 C 0.262 3.738 15 O -0.444 6.444 16 C 0.300 3.700 17 O -0.321 6.321 18 C -0.242 4.242 19 C -0.109 4.109 20 C -0.250 4.250 21 C -0.077 4.077 22 N -0.115 5.115 23 H 0.272 0.728 24 C -0.007 4.007 25 H 0.081 0.919 26 H 0.228 0.772 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.176 0.824 32 H 0.195 0.805 33 H 0.233 0.767 34 H 0.062 0.938 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.610 -12.996 -10.467 16.764 hybrid contribution -0.360 2.314 0.103 2.344 sum -1.970 -10.682 -10.363 15.013 Atomic orbital electron populations 1.69744 1.07090 1.28600 1.50121 1.25808 0.95829 1.02789 0.92901 0.85386 0.79083 0.78816 0.77639 1.18997 1.20746 1.20289 1.21852 0.94023 0.91132 1.52578 0.91358 1.19721 0.86699 0.93571 0.80797 1.86102 1.51691 1.54521 1.47286 1.22825 0.97153 0.93558 1.01647 1.22698 0.93444 0.94953 0.90609 1.49000 1.47987 1.12250 1.22318 1.21189 0.80741 0.90730 0.81148 1.90507 1.41766 1.63056 1.49056 1.19801 0.78982 0.86461 0.84795 1.90594 1.32413 1.62168 1.46967 1.19458 1.11670 0.95202 0.97829 1.21954 0.99095 0.93009 0.96880 1.21380 1.05232 0.99101 0.99322 1.23123 1.00558 0.89474 0.94545 1.42584 1.37293 1.13059 1.18558 0.72778 1.22830 1.00147 0.78838 0.98920 0.91877 0.77223 0.89576 0.88909 0.87724 0.91069 0.82379 0.80490 0.76664 0.93832 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.90 10.96 21.45 0.24 -48.66 16 2 C 0.03 1.43 5.27 84.66 0.45 1.88 16 3 Si 0.97 41.47 29.54 68.60 2.03 43.50 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.56 -29.13 8.11 25.60 0.21 -28.93 16 8 H 0.07 3.49 7.77 -2.91 -0.02 3.46 16 9 C 0.23 11.38 0.85 -10.35 -0.01 11.37 16 10 O -0.59 -30.05 13.08 -148.98 -1.95 -32.00 16 11 C -0.11 -4.60 6.23 31.98 0.20 -4.40 16 12 C 0.10 3.96 6.05 86.85 0.53 4.49 16 13 N -0.58 -24.97 3.33 -813.03 -2.71 -27.68 16 14 C 0.48 19.13 7.88 87.16 0.69 19.81 16 15 O -0.56 -23.88 14.75 -3.41 -0.05 -23.93 16 16 C 0.42 14.36 6.97 26.00 0.18 14.54 16 17 O -0.44 -15.46 14.23 -4.06 -0.06 -15.52 16 18 C -0.13 -3.76 6.78 39.15 0.27 -3.50 16 19 C -0.08 -1.87 10.61 22.68 0.24 -1.63 16 20 C -0.23 -3.75 10.81 22.00 0.24 -3.51 16 21 C 0.06 1.03 11.87 83.67 0.99 2.02 16 22 N -0.52 -12.47 5.80 -187.31 -1.09 -13.56 16 23 H 0.43 11.03 6.70 -92.71 -0.62 10.41 16 24 C 0.11 5.66 5.39 86.67 0.47 6.13 16 25 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 26 H 0.38 19.98 7.24 -74.06 -0.54 19.45 16 27 H 0.09 3.30 8.03 -2.38 -0.02 3.28 16 28 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 29 H 0.10 3.59 6.15 -2.39 -0.01 3.57 16 30 H 0.07 2.68 8.14 -2.38 -0.02 2.67 16 31 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 32 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 33 H 0.22 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.04 2.34 8.00 -2.39 -0.02 2.32 16 35 H 0.05 2.53 7.81 -2.39 -0.02 2.51 16 Total: -1.00 -62.67 300.29 0.84 -61.83 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -0.01 Total: 37.75 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 4.44 Total: 18.28 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -3.56 Total: -89.90 kcal Atomic # 8 Polarization: -69.40 SS G_CDS: -2.06 Total: -71.45 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -62.67 0.84 -61.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332412433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.528 kcal (2) G-P(sol) polarization free energy of solvation -62.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds