Wall clock time and date at job start Tue Mar 31 2020 00:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48500 * 109.47058 * 240.00610 * 3 2 1 5 5 H 1.48506 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47195 * 120.00367 * 3 2 1 7 7 C 1.38882 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00010 * 183.44830 * 7 2 1 9 9 N 1.37207 * 120.00288 * 3.44532 * 7 2 1 10 10 C 1.34783 * 120.00289 * 159.35171 * 9 7 2 11 11 O 1.21269 * 120.00249 * 184.59010 * 10 9 7 12 12 C 1.50700 * 119.99577 * 4.59893 * 10 9 7 13 13 H 1.09003 * 109.52547 * 48.83248 * 12 10 9 14 14 C 1.53144 * 109.52492 * 288.69553 * 12 10 9 15 15 O 1.43073 * 109.15220 * 184.78562 * 14 12 10 16 16 C 1.43076 * 113.59170 * 57.95645 * 15 14 12 17 17 C 1.53150 * 109.15130 * 302.04939 * 16 15 14 18 18 O 1.43070 * 109.15070 * 55.30676 * 17 16 15 19 19 C 1.39428 * 119.99907 * 339.35913 * 9 7 2 20 20 C 1.39062 * 119.69902 * 275.88851 * 19 9 7 21 21 C 1.38375 * 119.10055 * 180.27305 * 20 19 9 22 22 C 1.38827 * 118.48971 * 359.49086 * 21 20 19 23 23 C 1.38137 * 119.31315 * 0.53331 * 22 21 20 24 24 N 1.31881 * 120.85486 * 359.70209 * 23 22 21 25 25 H 0.96999 * 120.00399 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.52276 * 304.69558 * 14 12 10 27 27 H 1.09007 * 109.51878 * 64.82230 * 14 12 10 28 28 H 1.08998 * 109.52597 * 61.94473 * 16 15 14 29 29 H 1.08993 * 109.52815 * 182.14313 * 16 15 14 30 30 H 1.08999 * 109.52766 * 175.21516 * 17 16 15 31 31 H 1.09008 * 109.52051 * 295.40873 * 17 16 15 32 32 H 1.08005 * 120.45017 * 359.97438 * 20 19 9 33 33 H 1.07998 * 120.75289 * 179.72611 * 21 20 19 34 34 H 1.08002 * 120.34314 * 180.24357 * 22 21 20 35 35 H 1.08005 * 119.57565 * 179.72730 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0086 -1.2027 -0.0005 8 1 3.0872 -1.2036 0.0557 9 7 1.3245 -2.3899 -0.0725 10 6 1.9549 -3.5071 -0.4861 11 8 1.3316 -4.5374 -0.6294 12 6 3.4346 -3.4758 -0.7702 13 1 3.9555 -3.0033 0.0625 14 6 3.6927 -2.6805 -2.0532 15 8 5.0848 -2.7497 -2.3763 16 6 5.5672 -4.0858 -2.5473 17 6 5.3090 -4.8813 -1.2644 18 8 3.9170 -4.8119 -0.9412 19 6 -0.0230 -2.4406 0.2821 20 6 -0.3787 -2.5907 1.6181 21 6 -1.7195 -2.6453 1.9555 22 6 -2.6623 -2.5367 0.9423 23 6 -2.2374 -2.3897 -0.3639 24 7 -0.9522 -2.3459 -0.6562 25 1 -0.4851 0.8400 0.0004 26 1 3.1077 -3.1051 -2.8689 27 1 3.4044 -1.6403 -1.9011 28 1 5.0453 -4.5577 -3.3797 29 1 6.6373 -4.0632 -2.7529 30 1 5.5963 -5.9216 -1.4167 31 1 5.8940 -4.4565 -0.4485 32 1 0.3814 -2.6686 2.3815 33 1 -2.0257 -2.7657 2.9842 34 1 -3.7170 -2.5714 1.1723 35 1 -2.9672 -2.3093 -1.1560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332550300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:32 Heat of formation + Delta-G solvation = -57.603629 kcal Electronic energy + Delta-G solvation = -22420.309652 eV Core-core repulsion = 18998.934424 eV Total energy + Delta-G solvation = -3421.375228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08666 -39.20600 -37.62164 -35.66414 -34.84636 -31.83354 -31.49943 -31.24676 -29.33092 -27.56640 -25.26382 -24.50663 -22.62207 -22.45317 -21.14008 -19.50808 -18.28831 -16.95014 -16.28067 -16.01769 -15.56033 -15.49296 -15.27589 -14.90246 -14.82070 -14.61586 -13.83580 -13.51766 -13.18252 -12.87551 -12.52501 -12.37198 -12.23048 -11.94791 -11.60951 -11.27237 -11.19511 -11.14928 -10.76749 -10.57617 -10.35946 -10.19780 -9.59938 -8.90939 -8.81946 -8.69122 -8.48672 -8.03300 -7.87917 -6.42233 -4.20140 2.22407 2.38931 3.05241 3.13010 3.14376 3.51690 3.58651 4.02549 4.06278 4.64801 4.83754 4.92370 5.01939 5.25040 5.30088 5.39105 5.52338 5.60364 5.65035 5.74071 5.78224 5.84884 5.96102 6.11778 6.18827 6.36953 6.41233 6.65758 7.00831 7.06377 7.16788 7.26760 7.35845 7.39828 7.76802 8.24195 8.86213 9.14992 9.24864 9.62867 10.51538 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.007858 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.303330 B = 3562.347682 C = 4807.078807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.046 3.954 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.358 4.358 8 H 0.108 0.892 9 N -0.406 5.406 10 C 0.488 3.512 11 O -0.567 6.567 12 C 0.061 3.939 13 H 0.087 0.913 14 C 0.038 3.962 15 O -0.379 6.379 16 C 0.021 3.979 17 C 0.024 3.976 18 O -0.357 6.357 19 C 0.457 3.543 20 C -0.167 4.167 21 C -0.075 4.075 22 C -0.207 4.207 23 C 0.117 3.883 24 N -0.457 5.457 25 H 0.275 0.725 26 H 0.060 0.940 27 H 0.133 0.867 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -2.277 0.466 4.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.161 4.161 3 Si 0.753 3.247 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.484 4.484 8 H 0.126 0.874 9 N -0.127 5.127 10 C 0.275 3.725 11 O -0.448 6.448 12 C 0.000 4.000 13 H 0.104 0.896 14 C -0.039 4.039 15 O -0.298 6.298 16 C -0.057 4.057 17 C -0.053 4.053 18 O -0.276 6.276 19 C 0.231 3.769 20 C -0.190 4.190 21 C -0.101 4.101 22 C -0.228 4.228 23 C -0.043 4.043 24 N -0.168 5.168 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.151 0.849 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.156 -2.530 -0.481 4.889 hybrid contribution 0.114 1.046 0.975 1.435 sum 4.270 -1.484 0.494 4.547 Atomic orbital electron populations 1.69611 1.05821 1.27968 1.45155 1.25330 0.95636 0.99891 0.95287 0.85983 0.79012 0.80443 0.79311 1.19278 1.20729 1.19623 1.19626 0.92305 0.81537 1.54896 0.87442 1.41018 1.05719 1.08383 1.57570 1.19465 0.87864 0.84122 0.81029 1.90608 1.67237 1.31966 1.54973 1.22291 0.94657 0.83992 0.99028 0.89581 1.23291 0.81403 1.04046 0.95163 1.88093 1.25263 1.25535 1.90876 1.23224 1.00395 0.84605 0.97431 1.23235 0.83783 1.01559 0.96746 1.88185 1.23080 1.25368 1.90931 1.17447 0.84421 0.87387 0.87634 1.21693 0.96354 1.04218 0.96719 1.21098 0.92690 0.97760 0.98601 1.21726 0.99294 1.07099 0.94665 1.22152 0.91884 0.95669 0.94589 1.67128 1.01112 1.10013 1.38551 0.91302 0.92169 0.84935 0.92338 0.88264 0.88046 0.92390 0.86476 0.86423 0.86558 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.94 10.16 55.49 0.56 -21.38 16 2 C 0.05 1.13 5.44 -17.49 -0.10 1.04 16 3 Si 0.93 18.95 29.55 -169.99 -5.02 13.92 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.36 -8.70 7.74 -14.91 -0.12 -8.81 16 8 H 0.11 2.39 5.68 -52.48 -0.30 2.10 16 9 N -0.41 -10.36 2.74 -60.71 -0.17 -10.52 16 10 C 0.49 12.24 6.98 -10.98 -0.08 12.17 16 11 O -0.57 -15.99 16.52 -14.05 -0.23 -16.22 16 12 C 0.06 1.28 2.42 -27.81 -0.07 1.21 16 13 H 0.09 1.70 7.24 -51.93 -0.38 1.32 16 14 C 0.04 0.73 6.03 37.23 0.22 0.96 16 15 O -0.38 -6.56 10.85 -48.80 -0.53 -7.09 16 16 C 0.02 0.28 7.05 37.23 0.26 0.55 16 17 C 0.02 0.35 7.05 37.23 0.26 0.61 16 18 O -0.36 -7.19 10.05 -62.41 -0.63 -7.82 16 19 C 0.46 11.69 3.03 -154.63 -0.47 11.22 16 20 C -0.17 -3.83 9.98 -39.23 -0.39 -4.23 16 21 C -0.08 -1.46 10.17 -39.31 -0.40 -1.86 16 22 C -0.21 -3.90 10.11 -39.40 -0.40 -4.30 16 23 C 0.12 2.48 11.18 -17.57 -0.20 2.29 16 24 N -0.46 -11.65 9.33 -12.34 -0.12 -11.77 16 25 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.13 2.66 6.08 -51.93 -0.32 2.34 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.12 2.55 8.06 -52.48 -0.42 2.12 16 33 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 34 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -31.97 297.93 -7.03 -39.00 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.93 Total: 6.55 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -1.46 Total: 10.84 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.28 Total: -43.67 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.39 Total: -31.13 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.97 -7.03 -39.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332550300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.607 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds