Wall clock time and date at job start Tue Mar 31 2020 00:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48500 * 109.47058 * 240.00610 * 3 2 1 5 5 H 1.48506 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47195 * 120.00367 * 3 2 1 7 7 C 1.38882 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00010 * 183.44830 * 7 2 1 9 9 N 1.37207 * 120.00288 * 3.44532 * 7 2 1 10 10 C 1.34783 * 120.00289 * 159.35171 * 9 7 2 11 11 O 1.21269 * 120.00249 * 184.59010 * 10 9 7 12 12 C 1.50700 * 119.99577 * 4.59893 * 10 9 7 13 13 H 1.09003 * 109.52547 * 48.83248 * 12 10 9 14 14 C 1.53144 * 109.52492 * 288.69553 * 12 10 9 15 15 O 1.43073 * 109.15220 * 184.78562 * 14 12 10 16 16 C 1.43076 * 113.59170 * 57.95645 * 15 14 12 17 17 C 1.53150 * 109.15130 * 302.04939 * 16 15 14 18 18 O 1.43070 * 109.15070 * 55.30676 * 17 16 15 19 19 C 1.39428 * 119.99907 * 339.35913 * 9 7 2 20 20 C 1.39062 * 119.69902 * 275.88851 * 19 9 7 21 21 C 1.38375 * 119.10055 * 180.27305 * 20 19 9 22 22 C 1.38827 * 118.48971 * 359.49086 * 21 20 19 23 23 C 1.38137 * 119.31315 * 0.53331 * 22 21 20 24 24 N 1.31881 * 120.85486 * 359.70209 * 23 22 21 25 25 H 0.96999 * 120.00399 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.52276 * 304.69558 * 14 12 10 27 27 H 1.09007 * 109.51878 * 64.82230 * 14 12 10 28 28 H 1.08998 * 109.52597 * 61.94473 * 16 15 14 29 29 H 1.08993 * 109.52815 * 182.14313 * 16 15 14 30 30 H 1.08999 * 109.52766 * 175.21516 * 17 16 15 31 31 H 1.09008 * 109.52051 * 295.40873 * 17 16 15 32 32 H 1.08005 * 120.45017 * 359.97438 * 20 19 9 33 33 H 1.07998 * 120.75289 * 179.72611 * 21 20 19 34 34 H 1.08002 * 120.34314 * 180.24357 * 22 21 20 35 35 H 1.08005 * 119.57565 * 179.72730 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6965 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0086 -1.2027 -0.0005 8 1 3.0872 -1.2036 0.0557 9 7 1.3245 -2.3899 -0.0725 10 6 1.9549 -3.5071 -0.4861 11 8 1.3316 -4.5374 -0.6294 12 6 3.4346 -3.4758 -0.7702 13 1 3.9555 -3.0033 0.0625 14 6 3.6927 -2.6805 -2.0532 15 8 5.0848 -2.7497 -2.3763 16 6 5.5672 -4.0858 -2.5473 17 6 5.3090 -4.8813 -1.2644 18 8 3.9170 -4.8119 -0.9412 19 6 -0.0230 -2.4406 0.2821 20 6 -0.3787 -2.5907 1.6181 21 6 -1.7195 -2.6453 1.9555 22 6 -2.6623 -2.5367 0.9423 23 6 -2.2374 -2.3897 -0.3639 24 7 -0.9522 -2.3459 -0.6562 25 1 -0.4851 0.8400 0.0004 26 1 3.1077 -3.1051 -2.8689 27 1 3.4044 -1.6403 -1.9011 28 1 5.0453 -4.5577 -3.3797 29 1 6.6373 -4.0632 -2.7529 30 1 5.5963 -5.9216 -1.4167 31 1 5.8940 -4.4565 -0.4485 32 1 0.3814 -2.6686 2.3815 33 1 -2.0257 -2.7657 2.9842 34 1 -3.7170 -2.5714 1.1723 35 1 -2.9672 -2.3093 -1.1560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332550300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:32 Heat of formation + Delta-G solvation = -79.210649 kcal Electronic energy + Delta-G solvation = -22421.246602 eV Core-core repulsion = 18998.934424 eV Total energy + Delta-G solvation = -3422.312179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75699 -40.74018 -39.33093 -37.16356 -36.65238 -33.69875 -33.06788 -32.80320 -30.89947 -28.99979 -27.11485 -26.00123 -24.20941 -24.09040 -22.55599 -21.30356 -20.01672 -18.61222 -17.75223 -17.49770 -17.17097 -17.09445 -16.82472 -16.48087 -16.32875 -16.24510 -15.47013 -15.11629 -14.83031 -14.39703 -14.17941 -14.04524 -13.77422 -13.44592 -13.22135 -12.98249 -12.73301 -12.59377 -12.43652 -12.17893 -11.79505 -11.60190 -11.36692 -10.63646 -10.48456 -10.33660 -10.18336 -9.79409 -9.60880 -8.24383 -6.09700 0.56163 0.77230 1.39397 1.45547 1.55109 1.72455 1.99917 2.36265 2.70668 3.06932 3.09861 3.30397 3.59922 3.85661 3.89986 4.05286 4.09643 4.18470 4.19892 4.31943 4.49696 4.53036 4.56470 4.66496 4.72603 4.81419 4.90202 5.04371 5.30619 5.39011 5.46310 5.68458 5.93528 5.95977 6.05841 6.41878 6.98444 7.31612 7.51689 7.78691 8.66858 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.007858 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.303330 B = 3562.347682 C = 4807.078807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.004 3.996 3 Si 0.993 3.007 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.370 4.370 8 H 0.122 0.878 9 N -0.411 5.411 10 C 0.470 3.530 11 O -0.613 6.613 12 C 0.073 3.927 13 H 0.096 0.904 14 C 0.052 3.948 15 O -0.383 6.383 16 C 0.015 3.985 17 C 0.016 3.984 18 O -0.388 6.388 19 C 0.420 3.580 20 C -0.194 4.194 21 C -0.070 4.070 22 C -0.193 4.193 23 C 0.098 3.902 24 N -0.501 5.501 25 H 0.270 0.730 26 H 0.045 0.955 27 H 0.123 0.877 28 H 0.058 0.942 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -1.742 1.053 5.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.140 0.860 9 N -0.130 5.130 10 C 0.259 3.741 11 O -0.498 6.498 12 C 0.012 3.988 13 H 0.113 0.887 14 C -0.025 4.025 15 O -0.302 6.302 16 C -0.061 4.061 17 C -0.060 4.060 18 O -0.307 6.307 19 C 0.195 3.805 20 C -0.216 4.216 21 C -0.096 4.096 22 C -0.213 4.213 23 C -0.062 4.062 24 N -0.213 5.213 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.140 0.860 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.151 0.849 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.852 -1.993 0.113 5.246 hybrid contribution -0.146 0.802 0.792 1.137 sum 4.706 -1.191 0.906 4.938 Atomic orbital electron populations 1.69816 1.07182 1.28137 1.45731 1.26206 0.96370 1.02849 0.94685 0.84983 0.77703 0.76016 0.79757 1.18631 1.21251 1.18452 1.20040 0.93085 0.81551 1.54803 0.86040 1.41319 1.06263 1.08749 1.56653 1.20237 0.89657 0.83549 0.80643 1.90542 1.68669 1.33379 1.57225 1.22089 0.91914 0.84968 0.99862 0.88682 1.22957 0.82691 1.02886 0.93978 1.88078 1.23519 1.27889 1.90712 1.23555 1.02697 0.82757 0.97112 1.23641 0.81034 1.03872 0.97499 1.88143 1.26432 1.24779 1.91320 1.17816 0.84576 0.89295 0.88775 1.21872 0.98278 1.05672 0.95796 1.21615 0.91262 0.95711 1.00994 1.22205 1.01598 1.04244 0.93247 1.22780 0.91143 0.95322 0.96910 1.67048 1.02836 1.11764 1.39641 0.91886 0.93708 0.85965 0.92344 0.83991 0.84938 0.90897 0.86663 0.82177 0.81751 0.82039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.72 10.16 21.65 0.22 -45.50 16 2 C 0.00 0.18 5.44 84.91 0.46 0.64 16 3 Si 0.99 38.66 29.55 68.60 2.03 40.69 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.29 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.37 -18.28 7.74 84.01 0.65 -17.63 16 8 H 0.12 5.45 5.68 -2.91 -0.02 5.43 16 9 N -0.41 -21.68 2.74 -464.38 -1.27 -22.95 16 10 C 0.47 24.58 6.98 87.66 0.61 25.19 16 11 O -0.61 -36.34 16.52 15.76 0.26 -36.07 16 12 C 0.07 3.08 2.42 29.90 0.07 3.16 16 13 H 0.10 3.77 7.24 -2.39 -0.02 3.75 16 14 C 0.05 2.05 6.03 72.03 0.43 2.49 16 15 O -0.38 -12.73 10.85 -136.00 -1.48 -14.21 16 16 C 0.02 0.38 7.05 72.03 0.51 0.89 16 17 C 0.02 0.42 7.05 72.03 0.51 0.92 16 18 O -0.39 -15.61 10.05 -122.99 -1.24 -16.85 16 19 C 0.42 22.13 3.03 132.90 0.40 22.53 16 20 C -0.19 -9.01 9.98 22.50 0.22 -8.78 16 21 C -0.07 -2.59 10.17 22.44 0.23 -2.37 16 22 C -0.19 -6.81 10.11 22.39 0.23 -6.58 16 23 C 0.10 4.10 11.18 84.66 0.95 5.05 16 24 N -0.50 -26.20 9.33 -192.95 -1.80 -28.00 16 25 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.12 4.99 6.08 -2.38 -0.01 4.98 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.12 5.17 8.06 -2.91 -0.02 5.14 16 33 H 0.16 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 35 H 0.16 5.64 8.06 -2.91 -0.02 5.61 16 Total: -1.00 -72.69 297.93 3.11 -69.58 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 1.11 Total: 27.82 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: 5.27 Total: 25.50 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -2.85 Total: -96.45 kcal Atomic # 8 Polarization: -64.68 SS G_CDS: -2.45 Total: -67.13 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -72.69 3.11 -69.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332550300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.630 kcal (2) G-P(sol) polarization free energy of solvation -72.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds