Wall clock time and date at job start Tue Mar 31 2020 00:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86800 * 119.99659 * 2 1 4 4 H 1.48502 * 109.47338 * 269.99915 * 3 2 1 5 5 H 1.48494 * 109.47397 * 30.00346 * 3 2 1 6 6 H 1.48502 * 109.47086 * 150.00425 * 3 2 1 7 7 C 1.38887 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00131 * 248.70760 * 7 2 1 9 9 N 1.37214 * 120.00289 * 68.71129 * 7 2 1 10 10 C 1.34783 * 119.99671 * 305.72828 * 9 7 2 11 11 O 1.21272 * 120.00048 * 352.28590 * 10 9 7 12 12 C 1.50694 * 120.00007 * 172.28961 * 10 9 7 13 13 H 1.09006 * 109.52688 * 262.08800 * 12 10 9 14 14 C 1.53148 * 109.52379 * 22.21858 * 12 10 9 15 15 O 1.43084 * 109.15090 * 175.28174 * 14 12 10 16 16 C 1.43073 * 113.58858 * 302.04864 * 15 14 12 17 17 C 1.53138 * 109.15381 * 57.95356 * 16 15 14 18 18 O 1.43074 * 109.20490 * 304.65337 * 17 16 15 19 19 C 1.39425 * 120.00546 * 125.72251 * 9 7 2 20 20 C 1.39068 * 119.70018 * 266.20576 * 19 9 7 21 21 C 1.38375 * 119.09815 * 179.73149 * 20 19 9 22 22 C 1.38830 * 118.49203 * 0.52210 * 21 20 19 23 23 C 1.38140 * 119.31235 * 359.74085 * 22 21 20 24 24 N 1.31884 * 120.85254 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.99861 * 4.92362 * 1 2 3 26 26 H 1.08996 * 109.52285 * 55.37929 * 14 12 10 27 27 H 1.09000 * 109.52488 * 295.18203 * 14 12 10 28 28 H 1.08997 * 109.52701 * 298.04758 * 16 15 14 29 29 H 1.09008 * 109.57668 * 177.88685 * 16 15 14 30 30 H 1.08998 * 109.52838 * 64.59257 * 17 16 15 31 31 H 1.09001 * 109.52555 * 184.71899 * 17 16 15 32 32 H 1.07998 * 120.44862 * 359.97438 * 20 19 9 33 33 H 1.08002 * 120.75414 * 180.26339 * 21 20 19 34 34 H 1.07997 * 120.34213 * 179.70974 * 22 21 20 35 35 H 1.08000 * 119.57925 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0086 -1.2028 -0.0005 8 1 2.5728 -1.5010 0.8708 9 7 1.9781 -2.0122 -1.1081 10 6 0.7961 -2.4019 -1.6255 11 8 -0.2346 -2.1558 -1.0359 12 6 0.7554 -3.1434 -2.9368 13 1 0.5310 -2.4452 -3.7433 14 6 2.1133 -3.8031 -3.1941 15 8 2.0329 -4.5944 -4.3835 16 6 1.0221 -5.6056 -4.3312 17 6 -0.3357 -4.9458 -4.0740 18 8 -0.2568 -4.1548 -2.8844 19 6 3.1696 -2.4315 -1.6983 20 6 3.7073 -1.7061 -2.7560 21 6 4.8933 -2.1303 -3.3289 22 6 5.4974 -3.2761 -2.8294 23 6 4.9043 -3.9507 -1.7799 24 7 3.7762 -3.5195 -1.2500 25 1 -0.4850 0.8370 -0.0721 26 1 2.3744 -4.4406 -2.3494 27 1 2.8745 -3.0331 -3.3196 28 1 1.2465 -6.3037 -3.5248 29 1 0.9926 -6.1419 -5.2797 30 1 -0.5970 -4.3084 -4.9187 31 1 -1.0972 -5.7158 -3.9496 32 1 3.2079 -0.8214 -3.1226 33 1 5.3367 -1.5847 -4.1487 34 1 6.4212 -3.6366 -3.2572 35 1 5.3708 -4.8424 -1.3877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332550301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:35 Heat of formation + Delta-G solvation = 11.979264 kcal Electronic energy + Delta-G solvation = -23063.898726 eV Core-core repulsion = 19645.540839 eV Total energy + Delta-G solvation = -3418.357887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24020 -39.14378 -37.78295 -35.60357 -34.31574 -32.84939 -32.16451 -31.01658 -29.55943 -27.89889 -24.96518 -24.31532 -23.15362 -22.75641 -21.30258 -19.97199 -17.79932 -16.97657 -16.39477 -16.31395 -16.02878 -15.76201 -15.53249 -14.98079 -14.58517 -14.50641 -13.92215 -13.72835 -13.34487 -13.29413 -12.91012 -12.70978 -12.29409 -12.09827 -11.57506 -11.52532 -11.41625 -11.03676 -10.63140 -10.49190 -10.38389 -10.26360 -9.34542 -9.14934 -8.85252 -8.56808 -8.35112 -7.84014 -7.70672 -6.80249 -3.85591 1.41803 1.63523 3.13902 3.35069 3.38109 3.49561 3.95356 4.02617 4.11234 4.30885 4.47532 4.64708 4.85662 5.06571 5.14508 5.20912 5.22464 5.29941 5.39624 5.40432 5.47241 5.55062 5.70415 5.81402 5.92585 6.01447 6.12559 6.19825 6.40626 6.49610 6.95811 7.22336 7.29676 7.34888 8.28634 8.41720 8.78594 9.05630 9.32466 10.04169 10.20395 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016876 B = 0.009256 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.743525 B = 3024.374842 C = 4216.150768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.674 5.674 2 C 0.145 3.855 3 Si 0.798 3.202 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.446 4.446 8 H 0.091 0.909 9 N -0.414 5.414 10 C 0.474 3.526 11 O -0.467 6.467 12 C 0.039 3.961 13 H 0.077 0.923 14 C -0.033 4.033 15 O -0.380 6.380 16 C 0.020 3.980 17 C 0.022 3.978 18 O -0.351 6.351 19 C 0.397 3.603 20 C -0.187 4.187 21 C -0.074 4.074 22 C -0.194 4.194 23 C 0.110 3.890 24 N -0.498 5.498 25 H 0.269 0.731 26 H 0.083 0.917 27 H 0.146 0.854 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 -6.333 -10.400 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.293 5.293 2 C -0.083 4.083 3 Si 0.617 3.383 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.109 0.891 9 N -0.140 5.140 10 C 0.260 3.740 11 O -0.337 6.337 12 C -0.023 4.023 13 H 0.095 0.905 14 C -0.108 4.108 15 O -0.299 6.299 16 C -0.057 4.057 17 C -0.055 4.055 18 O -0.269 6.269 19 C 0.171 3.829 20 C -0.210 4.210 21 C -0.100 4.100 22 C -0.214 4.214 23 C -0.047 4.047 24 N -0.212 5.212 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.162 0.838 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.573 -6.635 -9.279 12.696 hybrid contribution 0.810 1.384 -0.884 1.831 sum 6.383 -5.252 -10.163 13.100 Atomic orbital electron populations 1.71213 1.09084 1.29143 1.19881 1.25486 0.92593 0.99048 0.91200 0.87997 0.84811 0.86236 0.79241 1.19785 1.21158 1.18510 1.18076 1.42583 1.00588 0.94994 0.89141 1.40681 0.98802 1.46206 1.28335 1.20205 0.86369 0.81538 0.85935 1.90739 1.31321 1.51966 1.59688 1.22900 0.88901 0.90765 0.99709 0.90528 1.26104 0.99195 0.96771 0.88738 1.88108 1.55242 1.47549 1.39014 1.23200 0.88803 0.91141 1.02556 1.23237 0.97717 0.95531 0.89018 1.88236 1.54958 1.46924 1.36776 1.18786 0.89940 0.87447 0.86713 1.22220 0.98006 1.02187 0.98565 1.21436 0.93969 0.95784 0.98764 1.21964 1.02012 0.97556 0.99919 1.22539 0.90746 0.98632 0.92816 1.67640 1.09592 1.14441 1.29493 0.91984 0.89887 0.83780 0.92462 0.88362 0.92534 0.87990 0.84471 0.84930 0.85145 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -18.98 11.26 55.49 0.62 -18.36 16 2 C 0.14 3.91 5.11 -17.49 -0.09 3.82 16 3 Si 0.80 18.58 29.69 -169.99 -5.05 13.53 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.45 -12.51 8.75 -14.90 -0.13 -12.64 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.41 -10.67 2.68 -64.14 -0.17 -10.84 16 10 C 0.47 12.58 7.13 -10.99 -0.08 12.50 16 11 O -0.47 -14.24 14.20 -10.52 -0.15 -14.39 16 12 C 0.04 0.86 3.31 -27.81 -0.09 0.77 16 13 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 14 C -0.03 -0.65 4.09 37.23 0.15 -0.50 16 15 O -0.38 -6.65 10.85 -48.72 -0.53 -7.18 16 16 C 0.02 0.29 7.05 37.23 0.26 0.55 16 17 C 0.02 0.35 7.05 37.23 0.26 0.61 16 18 O -0.35 -7.55 10.30 -60.70 -0.63 -8.18 16 19 C 0.40 8.55 3.25 -154.64 -0.50 8.05 16 20 C -0.19 -3.38 7.84 -39.22 -0.31 -3.69 16 21 C -0.07 -1.04 9.66 -39.31 -0.38 -1.42 16 22 C -0.19 -2.56 10.03 -39.40 -0.40 -2.96 16 23 C 0.11 1.70 10.62 -17.57 -0.19 1.52 16 24 N -0.50 -10.09 8.38 -15.45 -0.13 -10.22 16 25 H 0.27 6.87 8.32 -40.82 -0.34 6.54 16 26 H 0.08 1.76 5.90 -51.93 -0.31 1.45 16 27 H 0.15 2.72 1.93 -90.75 -0.18 2.55 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 289.71 15.07 4.37 4.37 Total: -1.00 -33.95 289.71 -6.99 -40.95 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.84 Total: 3.71 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.48 Total: 6.62 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.32 Total: -39.42 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -1.30 Total: -29.75 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.05 Total: 13.53 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.95 -6.99 -40.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332550301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.925 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds