Wall clock time and date at job start Tue Mar 31 2020 00:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86800 * 119.99659 * 2 1 4 4 H 1.48502 * 109.47338 * 269.99915 * 3 2 1 5 5 H 1.48494 * 109.47397 * 30.00346 * 3 2 1 6 6 H 1.48502 * 109.47086 * 150.00425 * 3 2 1 7 7 C 1.38887 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00131 * 248.70760 * 7 2 1 9 9 N 1.37214 * 120.00289 * 68.71129 * 7 2 1 10 10 C 1.34783 * 119.99671 * 305.72828 * 9 7 2 11 11 O 1.21272 * 120.00048 * 352.28590 * 10 9 7 12 12 C 1.50694 * 120.00007 * 172.28961 * 10 9 7 13 13 H 1.09006 * 109.52688 * 262.08800 * 12 10 9 14 14 C 1.53148 * 109.52379 * 22.21858 * 12 10 9 15 15 O 1.43084 * 109.15090 * 175.28174 * 14 12 10 16 16 C 1.43073 * 113.58858 * 302.04864 * 15 14 12 17 17 C 1.53138 * 109.15381 * 57.95356 * 16 15 14 18 18 O 1.43074 * 109.20490 * 304.65337 * 17 16 15 19 19 C 1.39425 * 120.00546 * 125.72251 * 9 7 2 20 20 C 1.39068 * 119.70018 * 266.20576 * 19 9 7 21 21 C 1.38375 * 119.09815 * 179.73149 * 20 19 9 22 22 C 1.38830 * 118.49203 * 0.52210 * 21 20 19 23 23 C 1.38140 * 119.31235 * 359.74085 * 22 21 20 24 24 N 1.31884 * 120.85254 * 359.97438 * 23 22 21 25 25 H 0.97000 * 119.99861 * 4.92362 * 1 2 3 26 26 H 1.08996 * 109.52285 * 55.37929 * 14 12 10 27 27 H 1.09000 * 109.52488 * 295.18203 * 14 12 10 28 28 H 1.08997 * 109.52701 * 298.04758 * 16 15 14 29 29 H 1.09008 * 109.57668 * 177.88685 * 16 15 14 30 30 H 1.08998 * 109.52838 * 64.59257 * 17 16 15 31 31 H 1.09001 * 109.52555 * 184.71899 * 17 16 15 32 32 H 1.07998 * 120.44862 * 359.97438 * 20 19 9 33 33 H 1.08002 * 120.75414 * 180.26339 * 21 20 19 34 34 H 1.07997 * 120.34213 * 179.70974 * 22 21 20 35 35 H 1.08000 * 119.57925 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0086 -1.2028 -0.0005 8 1 2.5728 -1.5010 0.8708 9 7 1.9781 -2.0122 -1.1081 10 6 0.7961 -2.4019 -1.6255 11 8 -0.2346 -2.1558 -1.0359 12 6 0.7554 -3.1434 -2.9368 13 1 0.5310 -2.4452 -3.7433 14 6 2.1133 -3.8031 -3.1941 15 8 2.0329 -4.5944 -4.3835 16 6 1.0221 -5.6056 -4.3312 17 6 -0.3357 -4.9458 -4.0740 18 8 -0.2568 -4.1548 -2.8844 19 6 3.1696 -2.4315 -1.6983 20 6 3.7073 -1.7061 -2.7560 21 6 4.8933 -2.1303 -3.3289 22 6 5.4974 -3.2761 -2.8294 23 6 4.9043 -3.9507 -1.7799 24 7 3.7762 -3.5195 -1.2500 25 1 -0.4850 0.8370 -0.0721 26 1 2.3744 -4.4406 -2.3494 27 1 2.8745 -3.0331 -3.3196 28 1 1.2465 -6.3037 -3.5248 29 1 0.9926 -6.1419 -5.2797 30 1 -0.5970 -4.3084 -4.9187 31 1 -1.0972 -5.7158 -3.9496 32 1 3.2079 -0.8214 -3.1226 33 1 5.3367 -1.5847 -4.1487 34 1 6.4212 -3.6366 -3.2572 35 1 5.3708 -4.8424 -1.3877 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332550301.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:34 Heat of formation + Delta-G solvation = -12.980335 kcal Electronic energy + Delta-G solvation = -23064.981056 eV Core-core repulsion = 19645.540839 eV Total energy + Delta-G solvation = -3419.440217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.72318 -40.55682 -39.55583 -37.07912 -36.16636 -34.74940 -33.46351 -32.53981 -30.99612 -29.36875 -26.83219 -25.83160 -24.40962 -24.19952 -22.70122 -21.75646 -19.51151 -18.66128 -17.93609 -17.72884 -17.43655 -17.11444 -16.83446 -16.52150 -16.46203 -15.93962 -15.76843 -15.21348 -15.01357 -14.75792 -14.39195 -14.05229 -13.97766 -13.79343 -13.22077 -12.86421 -12.81191 -12.63723 -12.47728 -12.12350 -11.89619 -11.72474 -10.82872 -10.56168 -10.51009 -10.24614 -10.03928 -9.61493 -9.43407 -8.82020 -5.93445 0.11180 0.41967 1.27417 1.41547 1.52810 1.75302 2.17311 2.38105 2.61741 2.66674 2.87114 3.03914 3.43852 3.58323 3.78976 3.91943 3.95736 4.06973 4.12560 4.21158 4.25073 4.28631 4.42221 4.58090 4.66635 4.73586 4.75395 4.87024 5.22422 5.30393 5.31081 5.74495 5.87817 5.89980 6.21858 6.79992 6.96352 7.14921 7.42054 8.10563 8.24322 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016876 B = 0.009256 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.743525 B = 3024.374842 C = 4216.150768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.722 5.722 2 C 0.106 3.894 3 Si 0.895 3.105 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.489 4.489 8 H 0.059 0.941 9 N -0.416 5.416 10 C 0.451 3.549 11 O -0.532 6.532 12 C 0.048 3.952 13 H 0.081 0.919 14 C -0.014 4.014 15 O -0.381 6.381 16 C 0.017 3.983 17 C 0.012 3.988 18 O -0.389 6.389 19 C 0.358 3.642 20 C -0.198 4.198 21 C -0.059 4.059 22 C -0.165 4.165 23 C 0.099 3.901 24 N -0.537 5.537 25 H 0.275 0.725 26 H 0.062 0.938 27 H 0.157 0.843 28 H 0.054 0.946 29 H 0.144 0.856 30 H 0.069 0.931 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 -6.524 -13.450 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.343 5.343 2 C -0.121 4.121 3 Si 0.714 3.286 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.606 4.606 8 H 0.076 0.924 9 N -0.140 5.140 10 C 0.239 3.761 11 O -0.408 6.408 12 C -0.014 4.014 13 H 0.099 0.901 14 C -0.089 4.089 15 O -0.300 6.300 16 C -0.059 4.059 17 C -0.064 4.064 18 O -0.308 6.308 19 C 0.134 3.866 20 C -0.220 4.220 21 C -0.085 4.085 22 C -0.185 4.185 23 C -0.058 4.058 24 N -0.251 5.251 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.173 0.827 28 H 0.072 0.928 29 H 0.162 0.838 30 H 0.088 0.912 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.198 0.802 34 H 0.201 0.799 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 8.982 -6.824 -12.355 16.730 hybrid contribution -0.163 1.218 0.044 1.230 sum 8.819 -5.606 -12.311 16.148 Atomic orbital electron populations 1.71237 1.10978 1.30390 1.21659 1.26270 0.92839 1.02434 0.90507 0.86554 0.82152 0.80084 0.79796 1.18226 1.20483 1.18474 1.18036 1.43392 1.02494 0.96678 0.92365 1.40847 1.00458 1.45083 1.27655 1.21050 0.86144 0.81327 0.87615 1.90669 1.33323 1.54712 1.62107 1.22650 0.90806 0.91097 0.96809 0.90107 1.25804 0.97565 0.96773 0.88763 1.88090 1.56169 1.47912 1.37829 1.23476 0.87204 0.90352 1.04888 1.23658 0.99531 0.95805 0.87406 1.88178 1.55173 1.47414 1.40058 1.18641 0.88996 0.89681 0.89291 1.22197 0.99650 1.01915 0.98261 1.21974 0.91797 0.95842 0.98874 1.22550 1.02606 0.95803 0.97506 1.23219 0.89407 0.99750 0.93420 1.67479 1.11788 1.14680 1.31164 0.91337 0.91994 0.82699 0.92767 0.83829 0.91235 0.85167 0.84795 0.80233 0.79880 0.80018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -43.19 11.26 21.65 0.24 -42.95 16 2 C 0.11 6.01 5.11 84.91 0.43 6.45 16 3 Si 0.90 40.32 29.69 68.60 2.04 42.36 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.49 -29.30 8.75 84.01 0.74 -28.57 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 9 N -0.42 -22.76 2.68 -475.23 -1.28 -24.04 16 10 C 0.45 25.63 7.13 87.65 0.63 26.25 16 11 O -0.53 -35.24 14.20 12.37 0.18 -35.06 16 12 C 0.05 2.19 3.31 29.90 0.10 2.29 16 13 H 0.08 3.49 8.14 -2.38 -0.02 3.47 16 14 C -0.01 -0.53 4.09 72.03 0.29 -0.24 16 15 O -0.38 -12.47 10.85 -136.08 -1.48 -13.95 16 16 C 0.02 0.45 7.05 72.03 0.51 0.96 16 17 C 0.01 0.36 7.05 72.03 0.51 0.87 16 18 O -0.39 -17.34 10.30 -124.63 -1.28 -18.63 16 19 C 0.36 15.72 3.25 132.91 0.43 16.16 16 20 C -0.20 -6.86 7.84 22.50 0.18 -6.69 16 21 C -0.06 -1.40 9.66 22.44 0.22 -1.18 16 22 C -0.17 -3.46 10.03 22.39 0.22 -3.24 16 23 C 0.10 2.78 10.62 84.66 0.90 3.68 16 24 N -0.54 -21.86 8.38 -202.79 -1.70 -23.56 16 25 H 0.28 14.85 8.32 -92.71 -0.77 14.08 16 26 H 0.06 2.68 5.90 -2.39 -0.01 2.66 16 27 H 0.16 5.69 1.93 -38.85 -0.08 5.61 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 32 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 33 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -83.32 289.71 2.92 -80.40 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 1.05 Total: 18.69 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.15 Total: 16.74 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -2.73 Total: -90.55 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -2.58 Total: -67.63 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.04 Total: 42.36 kcal Total: -83.32 2.92 -80.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332550301.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.417 kcal (2) G-P(sol) polarization free energy of solvation -83.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds