Wall clock time and date at job start Tue Mar 31 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38139 * 119.96853 * 2 1 4 4 C 1.38846 * 119.92844 * 179.97438 * 3 2 1 5 5 N 1.39930 * 120.06900 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99780 * 144.91704 * 5 4 3 7 7 O 1.21287 * 120.00508 * 4.61423 * 6 5 4 8 8 C 1.50701 * 119.99846 * 184.61718 * 6 5 4 9 9 H 1.09003 * 109.47451 * 59.99619 * 8 6 5 10 10 C 1.53006 * 109.47137 * 299.99792 * 8 6 5 11 11 C 1.50701 * 109.47223 * 180.02562 * 8 6 5 12 12 H 1.07993 * 119.99811 * 359.97438 * 11 8 6 13 13 C 1.37881 * 120.00006 * 179.97438 * 11 8 6 14 14 N 1.31518 * 119.99749 * 359.97438 * 13 11 8 15 15 Si 1.86791 * 119.99970 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47201 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47272 * 119.99882 * 15 13 11 18 18 H 1.48498 * 109.47059 * 239.99682 * 15 13 11 19 19 C 1.38891 * 119.86435 * 359.97438 * 4 3 2 20 20 C 1.38092 * 119.92601 * 359.97438 * 19 4 3 21 21 N 1.48016 * 119.96530 * 179.97438 * 20 19 4 22 22 O 1.21804 * 119.99986 * 0.02562 * 21 20 19 23 23 O 1.21802 * 119.99807 * 180.02562 * 21 20 19 24 24 C 1.38260 * 119.96314 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47289 * 89.99737 * 1 2 3 26 26 H 1.08993 * 109.47152 * 210.00570 * 1 2 3 27 27 H 1.09006 * 109.46563 * 330.00277 * 1 2 3 28 28 H 1.08000 * 120.03283 * 0.25384 * 3 2 1 29 29 H 0.97000 * 119.99896 * 324.91852 * 5 4 3 30 30 H 1.09007 * 109.46570 * 60.00230 * 10 8 6 31 31 H 1.08999 * 109.47396 * 179.97438 * 10 8 6 32 32 H 1.08995 * 109.47360 * 300.00500 * 10 8 6 33 33 H 0.97000 * 119.99313 * 180.02562 * 14 13 11 34 34 H 1.07997 * 120.04233 * 179.97438 * 19 4 3 35 35 H 1.08000 * 119.92801 * 0.04884 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1967 0.0000 4 6 3.5855 1.1957 0.0005 5 7 4.2874 2.4062 0.0000 6 6 5.4514 2.5104 0.6712 7 8 5.9329 1.5339 1.2057 8 6 6.1548 3.8404 0.7578 9 1 5.5033 4.5649 1.2464 10 6 6.4956 4.3298 -0.6512 11 6 7.4237 3.6866 1.5561 12 1 7.6936 2.7223 1.9607 13 6 8.2401 4.7769 1.7700 14 7 7.9117 5.9511 1.2768 15 14 9.8133 4.5861 2.7589 16 1 9.9534 3.1746 3.1986 17 1 10.9767 4.9600 1.9152 18 1 9.7601 5.4721 3.9494 19 6 4.2762 -0.0092 0.0016 20 6 3.5806 -1.2021 0.0027 21 7 4.3158 -2.4867 0.0033 22 8 5.5339 -2.4913 0.0033 23 8 3.7028 -3.5393 0.0037 24 6 2.1975 -1.1978 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6570 2.1320 0.0041 29 1 3.9362 3.1703 -0.4835 30 1 5.5780 4.4410 -1.2290 31 1 7.0040 5.2920 -0.5887 32 1 7.1471 3.6054 -1.1399 33 1 8.4863 6.7180 1.4270 34 1 5.3562 -0.0133 0.0016 35 1 1.6557 -2.1321 0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338519300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:46 Heat of formation + Delta-G solvation = -22.221675 kcal Electronic energy + Delta-G solvation = -21089.472613 eV Core-core repulsion = 17669.631661 eV Total energy + Delta-G solvation = -3419.840951 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.07688 -40.42871 -38.63090 -36.43657 -34.82102 -34.01463 -33.16989 -31.13792 -29.71790 -27.42459 -26.57394 -25.30445 -23.76525 -22.15609 -21.64253 -19.68489 -18.99743 -18.43640 -17.41067 -16.85828 -16.67068 -16.37167 -15.77999 -15.51541 -14.67752 -14.25459 -14.05384 -13.64005 -13.26754 -12.88050 -12.65724 -12.51784 -12.31299 -12.09563 -11.72935 -11.44782 -11.15964 -11.08159 -11.01399 -10.90958 -10.79425 -10.58515 -10.33715 -10.09804 -9.39972 -9.14511 -8.92690 -8.50160 -8.32870 -6.16909 -4.21194 -0.10374 0.89142 1.39242 1.48631 3.03279 3.23733 3.26222 3.34580 3.44274 3.47547 4.26144 4.37121 4.63375 4.66805 4.73655 4.84233 5.15558 5.17211 5.23912 5.27271 5.54411 5.62980 5.89866 5.94282 6.01405 6.05146 6.40505 6.46570 6.60080 6.68965 6.78051 7.24094 7.52318 7.68538 7.76351 7.90668 8.12813 8.72687 8.88837 9.45617 10.90625 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.004494 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.072163 B = 6229.446495 C = 7190.260136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.109 4.109 4 C 0.174 3.826 5 N -0.686 5.686 6 C 0.518 3.482 7 O -0.515 6.515 8 C 0.034 3.966 9 H 0.059 0.941 10 C -0.136 4.136 11 C -0.507 4.507 12 H 0.077 0.923 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.901 3.099 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.072 4.072 20 C -0.020 4.020 21 N 0.030 4.970 22 O -0.151 6.151 23 O -0.169 6.169 24 C -0.089 4.089 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.414 0.586 30 H 0.012 0.988 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.171 0.829 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.548 -6.474 -5.348 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.067 4.067 3 C -0.130 4.130 4 C 0.076 3.924 5 N -0.332 5.332 6 C 0.309 3.691 7 O -0.388 6.388 8 C 0.013 3.987 9 H 0.076 0.924 10 C -0.194 4.194 11 C -0.545 4.545 12 H 0.095 0.905 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.729 3.271 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.094 4.094 20 C -0.103 4.103 21 N 0.549 4.451 22 O -0.370 6.370 23 O -0.383 6.383 24 C -0.110 4.110 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.251 0.749 30 H 0.031 0.969 31 H 0.116 0.884 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.189 0.811 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.401 -6.304 -4.918 17.353 hybrid contribution 0.875 0.080 0.276 0.921 sum -14.526 -6.224 -4.641 16.471 Atomic orbital electron populations 1.20802 0.89261 1.03672 1.03066 1.19595 0.96811 0.91064 0.99263 1.21276 0.92259 0.99157 1.00273 1.17616 0.90564 0.86653 0.97564 1.44243 1.24549 1.11185 1.53246 1.22561 0.77982 0.93964 0.74576 1.90581 1.63780 1.39821 1.44607 1.18945 0.96434 0.86857 0.96482 0.92355 1.21802 0.98481 1.04501 0.94617 1.21146 1.04418 0.96607 1.32334 0.90515 1.24939 0.98359 0.94982 0.95764 1.69863 1.38303 0.99895 1.45330 0.86359 0.82560 0.78531 0.79647 1.19415 1.20888 1.20958 1.21247 1.03691 0.88676 0.95759 1.20871 0.92172 0.83511 1.13774 1.43602 1.01346 1.02721 0.97393 1.94598 0.95292 1.94232 1.52830 1.94484 1.69784 1.20225 1.53821 1.20762 0.90796 1.00066 0.99332 0.90403 0.90814 0.90691 0.83862 0.74862 0.96855 0.88359 0.94616 0.92809 0.81139 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.07 -0.64 5.88 -104.65 -0.62 -1.26 16 3 C -0.11 -1.16 9.62 -39.39 -0.38 -1.54 16 4 C 0.17 2.51 6.30 -83.69 -0.53 1.99 16 5 N -0.69 -10.59 5.26 -9.86 -0.05 -10.64 16 6 C 0.52 10.75 6.99 -10.99 -0.08 10.67 16 7 O -0.52 -12.42 12.90 5.55 0.07 -12.35 16 8 C 0.03 0.78 2.65 -92.92 -0.25 0.53 16 9 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 10 C -0.14 -2.86 8.86 37.16 0.33 -2.53 16 11 C -0.51 -13.66 8.37 -34.44 -0.29 -13.95 16 12 H 0.08 2.20 6.75 -52.49 -0.35 1.85 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -23.98 11.32 55.43 0.63 -23.36 16 15 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.07 -1.20 8.20 -39.39 -0.32 -1.52 16 20 C -0.02 -0.30 6.85 -79.98 -0.55 -0.85 16 21 N 0.03 0.51 4.45 33.95 0.15 0.66 16 22 O -0.15 -2.85 18.45 -29.46 -0.54 -3.39 16 23 O -0.17 -2.76 18.44 -29.46 -0.54 -3.30 16 24 C -0.09 -1.05 9.21 -39.55 -0.36 -1.41 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.41 5.04 8.11 -40.82 -0.33 4.71 16 30 H 0.01 0.21 7.47 -51.92 -0.39 -0.17 16 31 H 0.10 2.32 6.07 -51.93 -0.32 2.00 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.17 3.34 5.78 -52.49 -0.30 3.03 16 35 H 0.15 1.46 7.60 -52.49 -0.40 1.06 16 LS Contribution 308.66 15.07 4.65 4.65 Total: -1.00 -30.71 308.66 -7.19 -37.90 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.76 Total: 2.31 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.77 Total: -8.66 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.73 Total: -33.34 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.02 Total: -19.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.71 -7.19 -37.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338519300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.674 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds