Wall clock time and date at job start Tue Mar 31 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38139 * 119.96853 * 2 1 4 4 C 1.38846 * 119.92844 * 179.97438 * 3 2 1 5 5 N 1.39930 * 120.06900 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99780 * 144.91704 * 5 4 3 7 7 O 1.21287 * 120.00508 * 4.61423 * 6 5 4 8 8 C 1.50701 * 119.99846 * 184.61718 * 6 5 4 9 9 H 1.09003 * 109.47451 * 59.99619 * 8 6 5 10 10 C 1.53006 * 109.47137 * 299.99792 * 8 6 5 11 11 C 1.50701 * 109.47223 * 180.02562 * 8 6 5 12 12 H 1.07993 * 119.99811 * 359.97438 * 11 8 6 13 13 C 1.37881 * 120.00006 * 179.97438 * 11 8 6 14 14 N 1.31518 * 119.99749 * 359.97438 * 13 11 8 15 15 Si 1.86791 * 119.99970 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47201 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47272 * 119.99882 * 15 13 11 18 18 H 1.48498 * 109.47059 * 239.99682 * 15 13 11 19 19 C 1.38891 * 119.86435 * 359.97438 * 4 3 2 20 20 C 1.38092 * 119.92601 * 359.97438 * 19 4 3 21 21 N 1.48016 * 119.96530 * 179.97438 * 20 19 4 22 22 O 1.21804 * 119.99986 * 0.02562 * 21 20 19 23 23 O 1.21802 * 119.99807 * 180.02562 * 21 20 19 24 24 C 1.38260 * 119.96314 * 179.97438 * 2 1 3 25 25 H 1.08993 * 109.47289 * 89.99737 * 1 2 3 26 26 H 1.08993 * 109.47152 * 210.00570 * 1 2 3 27 27 H 1.09006 * 109.46563 * 330.00277 * 1 2 3 28 28 H 1.08000 * 120.03283 * 0.25384 * 3 2 1 29 29 H 0.97000 * 119.99896 * 324.91852 * 5 4 3 30 30 H 1.09007 * 109.46570 * 60.00230 * 10 8 6 31 31 H 1.08999 * 109.47396 * 179.97438 * 10 8 6 32 32 H 1.08995 * 109.47360 * 300.00500 * 10 8 6 33 33 H 0.97000 * 119.99313 * 180.02562 * 14 13 11 34 34 H 1.07997 * 120.04233 * 179.97438 * 19 4 3 35 35 H 1.08000 * 119.92801 * 0.04884 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1967 0.0000 4 6 3.5855 1.1957 0.0005 5 7 4.2874 2.4062 0.0000 6 6 5.4514 2.5104 0.6712 7 8 5.9329 1.5339 1.2057 8 6 6.1548 3.8404 0.7578 9 1 5.5033 4.5649 1.2464 10 6 6.4956 4.3298 -0.6512 11 6 7.4237 3.6866 1.5561 12 1 7.6936 2.7223 1.9607 13 6 8.2401 4.7769 1.7700 14 7 7.9117 5.9511 1.2768 15 14 9.8133 4.5861 2.7589 16 1 9.9534 3.1746 3.1986 17 1 10.9767 4.9600 1.9152 18 1 9.7601 5.4721 3.9494 19 6 4.2762 -0.0092 0.0016 20 6 3.5806 -1.2021 0.0027 21 7 4.3158 -2.4867 0.0033 22 8 5.5339 -2.4913 0.0033 23 8 3.7028 -3.5393 0.0037 24 6 2.1975 -1.1978 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6570 2.1320 0.0041 29 1 3.9362 3.1703 -0.4835 30 1 5.5780 4.4410 -1.2290 31 1 7.0040 5.2920 -0.5887 32 1 7.1471 3.6054 -1.1399 33 1 8.4863 6.7180 1.4270 34 1 5.3562 -0.0133 0.0016 35 1 1.6557 -2.1321 0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338519300.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:46 Heat of formation + Delta-G solvation = -41.027085 kcal Electronic energy + Delta-G solvation = -21090.288076 eV Core-core repulsion = 17669.631661 eV Total energy + Delta-G solvation = -3420.656415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.36132 -41.73598 -39.95054 -37.76294 -36.17536 -35.90882 -34.14083 -32.86291 -31.05622 -28.18028 -27.78239 -27.25803 -25.29056 -23.36649 -22.95716 -21.14953 -20.23464 -19.72383 -18.72078 -18.48364 -18.13623 -17.57939 -17.29050 -16.75110 -16.52912 -15.62354 -15.15769 -14.88288 -14.57718 -14.44651 -13.65914 -13.43268 -13.36667 -13.18441 -13.02171 -12.92555 -12.79914 -12.72425 -12.64691 -12.39253 -12.33806 -12.28524 -12.09380 -11.72554 -11.10502 -10.72248 -10.47157 -10.25796 -9.52205 -8.21156 -6.31038 -1.30241 -0.14963 0.22713 0.29939 1.36258 1.39721 1.52016 1.61145 1.95603 2.28310 2.41958 3.09348 3.35390 3.56241 3.72272 3.85126 3.92851 4.07082 4.34262 4.55996 4.67984 4.73482 4.85246 4.87141 4.89188 4.91701 4.95486 5.11046 5.24207 5.34101 5.42910 5.60112 5.70307 5.86256 6.12572 6.41940 6.45704 6.76834 7.18304 7.38573 8.84542 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021800 B = 0.004494 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.072163 B = 6229.446495 C = 7190.260136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.080 4.080 4 C 0.151 3.849 5 N -0.665 5.665 6 C 0.521 3.479 7 O -0.560 6.560 8 C 0.030 3.970 9 H 0.056 0.944 10 C -0.124 4.124 11 C -0.533 4.533 12 H 0.046 0.954 13 C 0.026 3.974 14 N -0.906 5.906 15 Si 0.951 3.049 16 H -0.284 1.284 17 H -0.274 1.274 18 H -0.272 1.272 19 C -0.102 4.102 20 C -0.039 4.039 21 N 0.030 4.970 22 O -0.233 6.233 23 O -0.126 6.126 24 C -0.074 4.074 25 H 0.099 0.901 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.187 0.813 29 H 0.432 0.568 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.021 0.979 33 H 0.266 0.734 34 H 0.127 0.873 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.637 -5.936 -5.962 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.051 4.051 3 C -0.101 4.101 4 C 0.055 3.945 5 N -0.313 5.313 6 C 0.312 3.688 7 O -0.436 6.436 8 C 0.009 3.991 9 H 0.074 0.926 10 C -0.182 4.182 11 C -0.571 4.571 12 H 0.064 0.936 13 C -0.174 4.174 14 N -0.545 5.545 15 Si 0.777 3.223 16 H -0.209 1.209 17 H -0.199 1.199 18 H -0.198 1.198 19 C -0.124 4.124 20 C -0.122 4.122 21 N 0.546 4.454 22 O -0.431 6.431 23 O -0.355 6.355 24 C -0.094 4.094 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.204 0.796 29 H 0.273 0.727 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.375 -5.676 -5.567 20.943 hybrid contribution 1.843 -0.180 0.442 1.904 sum -17.532 -5.856 -5.125 19.181 Atomic orbital electron populations 1.20966 0.85466 1.05343 1.04849 1.20143 0.99011 0.89558 0.96387 1.21740 0.90129 1.01547 0.96640 1.17766 0.92057 0.84990 0.99678 1.43684 1.22944 1.12435 1.52195 1.22035 0.79301 0.92495 0.74937 1.90584 1.65412 1.40783 1.46867 1.18841 0.95145 0.88165 0.96940 0.92643 1.21623 1.00191 1.02450 0.93970 1.21278 1.06748 0.95520 1.33597 0.93580 1.25489 1.00527 0.94858 0.96531 1.69920 1.38992 1.00060 1.45521 0.85615 0.80069 0.77671 0.78977 1.20905 1.19910 1.19781 1.20994 1.02065 0.90682 0.98636 1.21023 0.93290 0.81838 1.16087 1.43924 1.01210 1.03508 0.96773 1.94623 0.96452 1.94669 1.57400 1.94409 1.69335 1.21039 1.50751 1.21251 0.88900 1.02318 0.96934 0.88308 0.89509 0.88820 0.79622 0.72730 0.92174 0.90675 0.95949 0.92436 0.85485 0.80725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 71.24 0.71 0.11 16 2 C -0.05 -0.71 5.88 -19.88 -0.12 -0.83 16 3 C -0.08 -1.36 9.62 22.39 0.22 -1.14 16 4 C 0.15 4.20 6.30 38.15 0.24 4.44 16 5 N -0.66 -19.97 5.26 -303.51 -1.60 -21.57 16 6 C 0.52 22.35 6.99 87.66 0.61 22.96 16 7 O -0.56 -28.93 12.90 -3.05 -0.04 -28.97 16 8 C 0.03 1.42 2.65 -12.28 -0.03 1.38 16 9 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 10 C -0.12 -5.23 8.86 71.98 0.64 -4.59 16 11 C -0.53 -29.97 8.37 25.60 0.21 -29.75 16 12 H 0.05 2.83 6.75 -2.91 -0.02 2.81 16 13 C 0.03 1.41 5.30 84.65 0.45 1.86 16 14 N -0.91 -48.85 11.32 21.45 0.24 -48.61 16 15 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 16 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 C -0.10 -3.53 8.20 22.39 0.18 -3.35 16 20 C -0.04 -1.18 6.85 36.36 0.25 -0.93 16 21 N 0.03 1.07 4.45 -46.51 -0.21 0.87 16 22 O -0.23 -9.66 18.45 18.88 0.35 -9.32 16 23 O -0.13 -4.00 18.44 18.88 0.35 -3.66 16 24 C -0.07 -1.49 9.21 22.29 0.21 -1.28 16 25 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.09 0.35 8.08 -2.39 -0.02 0.33 16 27 H 0.09 0.28 8.08 -2.38 -0.02 0.26 16 28 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 29 H 0.43 9.41 8.11 -92.71 -0.75 8.65 16 30 H 0.06 1.91 7.47 -2.38 -0.02 1.89 16 31 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 34 H 0.13 5.56 5.78 -2.91 -0.02 5.54 16 35 H 0.18 2.61 7.60 -2.91 -0.02 2.58 16 Total: -1.00 -73.38 308.66 5.08 -68.30 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.39 Total: 7.63 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 3.57 Total: -11.13 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -1.56 Total: -69.31 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: 0.66 Total: -41.94 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.38 5.08 -68.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338519300.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.272 kcal (2) G-P(sol) polarization free energy of solvation -73.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds