Wall clock time and date at job start Tue Mar 31 2020 00:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38139 * 119.96681 * 2 1 4 4 C 1.38846 * 119.93211 * 180.29654 * 3 2 1 5 5 N 1.39923 * 120.07449 * 179.72208 * 4 3 2 6 6 C 1.34771 * 120.00359 * 214.81305 * 5 4 3 7 7 O 1.21289 * 119.99991 * 355.38845 * 6 5 4 8 8 C 1.50697 * 120.00375 * 175.38242 * 6 5 4 9 9 H 1.09007 * 109.47363 * 300.00487 * 8 6 5 10 10 C 1.53004 * 109.46883 * 60.00052 * 8 6 5 11 11 C 1.50691 * 109.47411 * 180.02562 * 8 6 5 12 12 H 1.08002 * 120.00061 * 0.02562 * 11 8 6 13 13 C 1.37880 * 120.00052 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00022 * 359.97438 * 13 11 8 15 15 Si 1.86808 * 119.99870 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.46793 * 179.97438 * 15 13 11 17 17 H 1.48504 * 109.46812 * 299.99636 * 15 13 11 18 18 H 1.48495 * 109.47041 * 59.99881 * 15 13 11 19 19 C 1.38891 * 119.85871 * 359.44717 * 4 3 2 20 20 C 1.38100 * 119.92868 * 0.27715 * 19 4 3 21 21 N 1.48012 * 119.96622 * 179.97438 * 20 19 4 22 22 O 1.21799 * 119.99615 * 0.02562 * 21 20 19 23 23 O 1.21796 * 120.00048 * 179.97438 * 21 20 19 24 24 C 1.38265 * 119.96578 * 179.74554 * 2 1 3 25 25 H 1.08999 * 109.46771 * 270.25616 * 1 2 3 26 26 H 1.08998 * 109.47085 * 30.25532 * 1 2 3 27 27 H 1.09001 * 109.47007 * 150.25697 * 1 2 3 28 28 H 1.08005 * 120.03261 * 0.02562 * 3 2 1 29 29 H 0.96999 * 119.99792 * 34.81300 * 5 4 3 30 30 H 1.09003 * 109.46854 * 180.02562 * 10 8 6 31 31 H 1.09000 * 109.47084 * 299.99973 * 10 8 6 32 32 H 1.08991 * 109.47032 * 60.00326 * 10 8 6 33 33 H 0.97004 * 119.99525 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.04264 * 180.25095 * 19 4 3 35 35 H 1.07994 * 119.92834 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1967 0.0000 4 6 3.5855 1.1959 -0.0062 5 7 4.2874 2.4063 -0.0121 6 6 5.4514 2.5071 -0.6839 7 8 5.9328 1.5278 -1.2132 8 6 6.1547 3.8366 -0.7775 9 1 5.5031 4.5586 -1.2699 10 6 6.4954 4.3334 0.6289 11 6 7.4229 3.6789 -1.5760 12 1 7.6925 2.7126 -1.9761 13 6 8.2391 4.7682 -1.7958 14 7 7.9106 5.9449 -1.3091 15 14 9.8116 4.5725 -2.7851 16 1 10.5046 5.8827 -2.8774 17 1 10.6991 3.5887 -2.1144 18 1 9.4808 4.0907 -4.1502 19 6 4.2763 -0.0090 -0.0008 20 6 3.5806 -1.2020 0.0049 21 7 4.3160 -2.4866 0.0101 22 8 5.5339 -2.4910 0.0098 23 8 3.7031 -3.5391 0.0157 24 6 2.1976 -1.1978 0.0053 25 1 -0.3633 0.0046 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6570 2.1321 0.0004 29 1 3.9361 3.1729 0.4673 30 1 7.0037 5.2953 0.5612 31 1 5.5778 4.4476 1.2061 32 1 7.1469 3.6117 1.1213 33 1 8.4847 6.7113 -1.4641 34 1 5.3563 -0.0131 -0.0015 35 1 1.6559 -2.1321 0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338519303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:49 Heat of formation + Delta-G solvation = -22.186554 kcal Electronic energy + Delta-G solvation = -21088.821866 eV Core-core repulsion = 17668.982438 eV Total energy + Delta-G solvation = -3419.839428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.07887 -40.42882 -38.63067 -36.43820 -34.82151 -34.01266 -33.16904 -31.13779 -29.71794 -27.42414 -26.57393 -25.30206 -23.76474 -22.15647 -21.64152 -19.68400 -18.99787 -18.43642 -17.41194 -16.85723 -16.66923 -16.37051 -15.77633 -15.51144 -14.67981 -14.25716 -14.05341 -13.64139 -13.27527 -12.87599 -12.65406 -12.51576 -12.31165 -12.09467 -11.71867 -11.44787 -11.14230 -11.08126 -11.01447 -10.91153 -10.81572 -10.58875 -10.33713 -10.09973 -9.39950 -9.16915 -8.92544 -8.49082 -8.32681 -6.16406 -4.20922 -0.10368 0.89205 1.39254 1.48675 3.03287 3.23551 3.30705 3.33247 3.40853 3.47494 4.26162 4.37048 4.63413 4.66783 4.73648 4.84267 5.15564 5.17507 5.23903 5.27255 5.54408 5.62995 5.89908 5.94310 6.01410 6.05130 6.40599 6.46590 6.60192 6.69089 6.78062 7.24178 7.52443 7.68519 7.76398 7.90644 8.13093 8.72621 8.88205 9.45730 10.91016 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.004494 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.220902 B = 6229.648492 C = 7190.250030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.066 4.066 3 C -0.109 4.109 4 C 0.174 3.826 5 N -0.685 5.685 6 C 0.518 3.482 7 O -0.515 6.515 8 C 0.035 3.965 9 H 0.059 0.941 10 C -0.136 4.136 11 C -0.508 4.508 12 H 0.076 0.924 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.903 3.097 16 H -0.287 1.287 17 H -0.275 1.275 18 H -0.276 1.276 19 C -0.072 4.072 20 C -0.020 4.020 21 N 0.030 4.970 22 O -0.151 6.151 23 O -0.169 6.169 24 C -0.090 4.090 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.414 0.586 30 H 0.098 0.902 31 H 0.012 0.988 32 H 0.035 0.965 33 H 0.263 0.737 34 H 0.171 0.829 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.533 -6.408 5.397 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.067 4.067 3 C -0.130 4.130 4 C 0.076 3.924 5 N -0.332 5.332 6 C 0.309 3.691 7 O -0.388 6.388 8 C 0.014 3.986 9 H 0.076 0.924 10 C -0.194 4.194 11 C -0.547 4.547 12 H 0.094 0.906 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.731 3.269 16 H -0.213 1.213 17 H -0.200 1.200 18 H -0.201 1.201 19 C -0.094 4.094 20 C -0.103 4.103 21 N 0.549 4.451 22 O -0.370 6.370 23 O -0.383 6.383 24 C -0.110 4.110 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.251 0.749 30 H 0.116 0.884 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.189 0.811 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.385 -6.229 4.968 17.326 hybrid contribution 0.875 0.046 -0.286 0.922 sum -14.511 -6.184 4.681 16.453 Atomic orbital electron populations 1.20803 0.89259 1.03674 1.03065 1.19597 0.96810 0.91062 0.99251 1.21274 0.92245 0.99158 1.00305 1.17615 0.90562 0.86667 0.97538 1.44240 1.24550 1.11036 1.53385 1.22562 0.77977 0.94002 0.74534 1.90580 1.63789 1.39633 1.44808 1.18929 0.96404 0.86851 0.96450 0.92365 1.21802 0.98481 1.04483 0.94640 1.21058 1.04554 0.96472 1.32583 0.90637 1.24933 0.98326 0.94968 0.95742 1.69843 1.38427 0.99797 1.45329 0.86462 0.82708 0.77149 0.80630 1.21267 1.19994 1.20102 1.21249 1.03690 0.88687 0.95767 1.20872 0.92171 0.83515 1.13765 1.43596 1.01345 1.02720 0.97393 1.94596 0.95296 1.94231 1.52831 1.94483 1.69793 1.20218 1.53820 1.20761 0.90797 1.00066 0.99348 0.90404 0.90688 0.90812 0.83864 0.74865 0.88364 0.96852 0.94617 0.92692 0.81137 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.07 -0.64 5.88 -104.65 -0.62 -1.25 16 3 C -0.11 -1.16 9.62 -39.39 -0.38 -1.54 16 4 C 0.17 2.52 6.30 -83.70 -0.53 1.99 16 5 N -0.69 -10.59 5.26 -9.87 -0.05 -10.65 16 6 C 0.52 10.76 6.99 -10.99 -0.08 10.68 16 7 O -0.52 -12.42 12.90 5.55 0.07 -12.35 16 8 C 0.03 0.80 2.65 -92.93 -0.25 0.55 16 9 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 10 C -0.14 -2.86 8.86 37.16 0.33 -2.53 16 11 C -0.51 -13.71 8.38 -34.44 -0.29 -14.00 16 12 H 0.08 2.16 6.75 -52.49 -0.35 1.81 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 14 N -0.90 -23.99 11.32 55.43 0.63 -23.36 16 15 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.07 -1.20 8.20 -39.39 -0.32 -1.53 16 20 C -0.02 -0.30 6.85 -79.98 -0.55 -0.85 16 21 N 0.03 0.51 4.45 33.95 0.15 0.66 16 22 O -0.15 -2.85 18.44 -29.46 -0.54 -3.39 16 23 O -0.17 -2.76 18.44 -29.46 -0.54 -3.30 16 24 C -0.09 -1.05 9.21 -39.55 -0.36 -1.41 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 29 H 0.41 5.04 8.11 -40.82 -0.33 4.71 16 30 H 0.10 2.31 6.07 -51.93 -0.32 2.00 16 31 H 0.01 0.21 7.47 -51.93 -0.39 -0.17 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 34 H 0.17 3.34 5.77 -52.49 -0.30 3.03 16 35 H 0.15 1.46 7.60 -52.49 -0.40 1.06 16 LS Contribution 308.67 15.07 4.65 4.65 Total: -1.00 -30.64 308.67 -7.19 -37.83 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.76 Total: 2.36 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.77 Total: -8.66 kcal Atomic # 7 Polarization: -34.07 SS G_CDS: 0.73 Total: -33.35 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.02 Total: -19.04 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.64 -7.19 -37.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338519303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.643 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds