Wall clock time and date at job start Tue Mar 31 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38139 * 119.96681 * 2 1 4 4 C 1.38846 * 119.93211 * 180.29654 * 3 2 1 5 5 N 1.39923 * 120.07449 * 179.72208 * 4 3 2 6 6 C 1.34771 * 120.00359 * 214.81305 * 5 4 3 7 7 O 1.21289 * 119.99991 * 355.38845 * 6 5 4 8 8 C 1.50697 * 120.00375 * 175.38242 * 6 5 4 9 9 H 1.09007 * 109.47363 * 300.00487 * 8 6 5 10 10 C 1.53004 * 109.46883 * 60.00052 * 8 6 5 11 11 C 1.50691 * 109.47411 * 180.02562 * 8 6 5 12 12 H 1.08002 * 120.00061 * 0.02562 * 11 8 6 13 13 C 1.37880 * 120.00052 * 180.02562 * 11 8 6 14 14 N 1.31513 * 120.00022 * 359.97438 * 13 11 8 15 15 Si 1.86808 * 119.99870 * 179.97438 * 13 11 8 16 16 H 1.48507 * 109.46793 * 179.97438 * 15 13 11 17 17 H 1.48504 * 109.46812 * 299.99636 * 15 13 11 18 18 H 1.48495 * 109.47041 * 59.99881 * 15 13 11 19 19 C 1.38891 * 119.85871 * 359.44717 * 4 3 2 20 20 C 1.38100 * 119.92868 * 0.27715 * 19 4 3 21 21 N 1.48012 * 119.96622 * 179.97438 * 20 19 4 22 22 O 1.21799 * 119.99615 * 0.02562 * 21 20 19 23 23 O 1.21796 * 120.00048 * 179.97438 * 21 20 19 24 24 C 1.38265 * 119.96578 * 179.74554 * 2 1 3 25 25 H 1.08999 * 109.46771 * 270.25616 * 1 2 3 26 26 H 1.08998 * 109.47085 * 30.25532 * 1 2 3 27 27 H 1.09001 * 109.47007 * 150.25697 * 1 2 3 28 28 H 1.08005 * 120.03261 * 0.02562 * 3 2 1 29 29 H 0.96999 * 119.99792 * 34.81300 * 5 4 3 30 30 H 1.09003 * 109.46854 * 180.02562 * 10 8 6 31 31 H 1.09000 * 109.47084 * 299.99973 * 10 8 6 32 32 H 1.08991 * 109.47032 * 60.00326 * 10 8 6 33 33 H 0.97004 * 119.99525 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.04264 * 180.25095 * 19 4 3 35 35 H 1.07994 * 119.92834 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1967 0.0000 4 6 3.5855 1.1959 -0.0062 5 7 4.2874 2.4063 -0.0121 6 6 5.4514 2.5071 -0.6839 7 8 5.9328 1.5278 -1.2132 8 6 6.1547 3.8366 -0.7775 9 1 5.5031 4.5586 -1.2699 10 6 6.4954 4.3334 0.6289 11 6 7.4229 3.6789 -1.5760 12 1 7.6925 2.7126 -1.9761 13 6 8.2391 4.7682 -1.7958 14 7 7.9106 5.9449 -1.3091 15 14 9.8116 4.5725 -2.7851 16 1 10.5046 5.8827 -2.8774 17 1 10.6991 3.5887 -2.1144 18 1 9.4808 4.0907 -4.1502 19 6 4.2763 -0.0090 -0.0008 20 6 3.5806 -1.2020 0.0049 21 7 4.3160 -2.4866 0.0101 22 8 5.5339 -2.4910 0.0098 23 8 3.7031 -3.5391 0.0157 24 6 2.1976 -1.1978 0.0053 25 1 -0.3633 0.0046 1.0277 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6570 2.1321 0.0004 29 1 3.9361 3.1729 0.4673 30 1 7.0037 5.2953 0.5612 31 1 5.5778 4.4476 1.2061 32 1 7.1469 3.6117 1.1213 33 1 8.4847 6.7113 -1.4641 34 1 5.3563 -0.0131 -0.0015 35 1 1.6559 -2.1321 0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338519303.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:48 Heat of formation + Delta-G solvation = -40.914518 kcal Electronic energy + Delta-G solvation = -21089.633971 eV Core-core repulsion = 17668.982438 eV Total energy + Delta-G solvation = -3420.651534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.36279 -41.73559 -39.94969 -37.76398 -36.17523 -35.90617 -34.13977 -32.86215 -31.05605 -28.17996 -27.78183 -27.25491 -25.28957 -23.36622 -22.95676 -21.14823 -20.23456 -19.72351 -18.72142 -18.47754 -18.13347 -17.57924 -17.28710 -16.74890 -16.53024 -15.62395 -15.16406 -14.88189 -14.56903 -14.44406 -13.65226 -13.43037 -13.36398 -13.18406 -13.02326 -12.92669 -12.80187 -12.73283 -12.65032 -12.39233 -12.33816 -12.28872 -12.06384 -11.72660 -11.12265 -10.72150 -10.47047 -10.25785 -9.51993 -8.20635 -6.30709 -1.30186 -0.14877 0.22741 0.30036 1.39430 1.40096 1.48635 1.61202 1.95453 2.28386 2.41951 3.09887 3.35429 3.56310 3.72299 3.85134 3.92894 4.07086 4.34297 4.56016 4.68035 4.73519 4.85258 4.87142 4.89175 4.91680 4.95570 5.11094 5.24215 5.34094 5.42895 5.60107 5.70236 5.86321 6.12668 6.42041 6.45711 6.76490 7.18264 7.38664 8.84662 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021798 B = 0.004494 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.220902 B = 6229.648492 C = 7190.250030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.049 4.049 3 C -0.080 4.080 4 C 0.152 3.848 5 N -0.665 5.665 6 C 0.521 3.479 7 O -0.560 6.560 8 C 0.031 3.969 9 H 0.056 0.944 10 C -0.124 4.124 11 C -0.535 4.535 12 H 0.046 0.954 13 C 0.027 3.973 14 N -0.906 5.906 15 Si 0.950 3.050 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.278 1.278 19 C -0.102 4.102 20 C -0.039 4.039 21 N 0.031 4.969 22 O -0.233 6.233 23 O -0.127 6.127 24 C -0.074 4.074 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.187 0.813 29 H 0.432 0.568 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.021 0.979 33 H 0.267 0.733 34 H 0.127 0.873 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.626 -5.924 5.998 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.051 4.051 3 C -0.101 4.101 4 C 0.055 3.945 5 N -0.313 5.313 6 C 0.312 3.688 7 O -0.436 6.436 8 C 0.010 3.990 9 H 0.073 0.927 10 C -0.182 4.182 11 C -0.573 4.573 12 H 0.065 0.935 13 C -0.174 4.174 14 N -0.544 5.544 15 Si 0.776 3.224 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.203 1.203 19 C -0.124 4.124 20 C -0.122 4.122 21 N 0.546 4.454 22 O -0.431 6.431 23 O -0.355 6.355 24 C -0.094 4.094 25 H 0.117 0.883 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.204 0.796 29 H 0.273 0.727 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.145 0.855 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -19.365 -5.659 5.603 20.938 hybrid contribution 1.842 -0.198 -0.446 1.906 sum -17.523 -5.857 5.157 19.182 Atomic orbital electron populations 1.20967 0.85467 1.05339 1.04851 1.20145 0.99010 0.89559 0.96381 1.21738 0.90118 1.01548 0.96668 1.17764 0.92056 0.85008 0.99653 1.43681 1.22947 1.12295 1.52328 1.22034 0.79298 0.92529 0.74907 1.90582 1.65414 1.40584 1.47055 1.18828 0.95131 0.88164 0.96908 0.92670 1.21622 1.00187 1.02432 0.93995 1.21220 1.06853 0.95442 1.33817 0.93545 1.25486 1.00499 0.94854 0.96516 1.69904 1.39075 0.99943 1.45523 0.85733 0.79973 0.77458 0.79212 1.19687 1.20505 1.20341 1.20996 1.02066 0.90688 0.98639 1.21023 0.93286 0.81845 1.16078 1.43918 1.01210 1.03506 0.96774 1.94622 0.96454 1.94667 1.57386 1.94409 1.69346 1.21031 1.50762 1.21251 0.88906 1.02315 0.96950 0.88306 0.88823 0.89510 0.79618 0.72736 0.90676 0.92170 0.95966 0.92414 0.85473 0.80730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.01 71.24 0.71 0.11 16 2 C -0.05 -0.71 5.88 -19.88 -0.12 -0.83 16 3 C -0.08 -1.36 9.62 22.39 0.22 -1.14 16 4 C 0.15 4.20 6.30 38.15 0.24 4.44 16 5 N -0.66 -19.96 5.26 -303.52 -1.60 -21.56 16 6 C 0.52 22.33 6.99 87.66 0.61 22.95 16 7 O -0.56 -28.87 12.90 -3.06 -0.04 -28.91 16 8 C 0.03 1.44 2.65 -12.29 -0.03 1.41 16 9 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 10 C -0.12 -5.23 8.86 71.98 0.64 -4.60 16 11 C -0.53 -30.04 8.38 25.60 0.21 -29.83 16 12 H 0.05 2.83 6.75 -2.91 -0.02 2.81 16 13 C 0.03 1.44 5.30 84.66 0.45 1.89 16 14 N -0.91 -48.87 11.32 21.45 0.24 -48.63 16 15 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 C -0.10 -3.53 8.20 22.39 0.18 -3.35 16 20 C -0.04 -1.18 6.85 36.36 0.25 -0.93 16 21 N 0.03 1.07 4.45 -46.51 -0.21 0.87 16 22 O -0.23 -9.64 18.44 18.89 0.35 -9.29 16 23 O -0.13 -4.01 18.44 18.89 0.35 -3.66 16 24 C -0.07 -1.49 9.21 22.29 0.21 -1.29 16 25 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.09 0.28 8.09 -2.39 -0.02 0.26 16 27 H 0.09 0.35 8.08 -2.39 -0.02 0.33 16 28 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.43 9.40 8.11 -92.71 -0.75 8.65 16 30 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 31 H 0.06 1.91 7.47 -2.39 -0.02 1.89 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.13 5.56 5.77 -2.91 -0.02 5.54 16 35 H 0.18 2.61 7.60 -2.91 -0.02 2.58 16 Total: -1.00 -73.15 308.67 5.08 -68.06 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.39 Total: 7.85 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 3.57 Total: -11.16 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.56 Total: -69.32 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: 0.66 Total: -41.86 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -73.15 5.08 -68.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338519303.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.149 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds