Wall clock time and date at job start Mon Mar 30 2020 23:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00149 * 2 1 4 4 H 1.48500 * 109.47253 * 270.00434 * 3 2 1 5 5 H 1.48507 * 109.46871 * 30.00563 * 3 2 1 6 6 H 1.48503 * 109.47443 * 150.00174 * 3 2 1 7 7 C 1.37877 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00430 * 187.12258 * 7 2 1 9 9 C 1.50708 * 119.99466 * 7.12985 * 7 2 1 10 10 O 1.45208 * 112.90473 * 294.22631 * 9 7 2 11 11 C 1.34710 * 117.00081 * 307.25284 * 10 9 7 12 12 O 1.21477 * 120.00232 * 355.64922 * 11 10 9 13 13 C 1.47722 * 119.99861 * 175.64647 * 11 10 9 14 14 C 1.39627 * 120.14987 * 359.72163 * 13 11 10 15 15 C 1.37944 * 119.84730 * 179.78987 * 14 13 11 16 16 C 1.38370 * 120.14857 * 0.49183 * 15 14 13 17 17 C 1.50707 * 119.84675 * 179.76319 * 16 15 14 18 18 F 1.39901 * 109.47252 * 269.97832 * 17 16 15 19 19 C 1.38364 * 120.30407 * 359.74140 * 16 15 14 20 20 C 1.37944 * 120.14886 * 0.02562 * 19 16 15 21 21 C 1.53770 * 113.61807 * 65.48067 * 9 7 2 22 22 C 1.53783 * 87.17529 * 89.15705 * 21 9 7 23 23 C 1.53782 * 87.07837 * 25.39265 * 22 21 9 24 24 H 0.97006 * 120.00227 * 354.98214 * 1 2 3 25 25 H 1.07995 * 120.07502 * 0.02562 * 14 13 11 26 26 H 1.07998 * 119.92552 * 180.23397 * 15 14 13 27 27 H 1.09004 * 109.46937 * 29.98317 * 17 16 15 28 28 H 1.09000 * 109.46878 * 149.97490 * 17 16 15 29 29 H 1.08002 * 119.92762 * 179.97438 * 19 16 15 30 30 H 1.08005 * 120.07112 * 179.97438 * 20 19 16 31 31 H 1.09000 * 113.61633 * 334.56865 * 21 9 7 32 32 H 1.09000 * 113.61856 * 203.74562 * 21 9 7 33 33 H 1.09005 * 113.61455 * 139.93746 * 22 21 9 34 34 H 1.08997 * 113.61285 * 270.75911 * 22 21 9 35 35 H 1.08996 * 113.61760 * 89.11992 * 23 22 21 36 36 H 1.08999 * 113.61510 * 219.93833 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1977 0.1154 9 6 1.2597 -2.4940 -0.1631 10 8 0.3758 -2.7822 0.9523 11 6 0.9159 -2.7461 2.1859 12 8 2.1085 -2.5592 2.3215 13 6 0.0578 -2.9335 3.3736 14 6 -1.3143 -3.1427 3.2216 15 6 -2.1090 -3.3213 4.3348 16 6 -1.5509 -3.2835 5.6004 17 6 -2.4264 -3.4742 6.8122 18 9 -2.9064 -2.2320 7.2410 19 6 -0.1928 -3.0719 5.7585 20 6 0.6143 -2.8965 4.6537 21 6 0.5886 -2.6518 -1.5376 22 6 1.9034 -3.2854 -2.0221 23 6 2.1626 -3.6769 -0.5577 24 1 -0.4851 0.8369 0.0735 25 1 -1.7517 -3.1683 2.2345 26 1 -3.1699 -3.4869 4.2185 27 1 -3.2666 -4.1195 6.5555 28 1 -1.8455 -3.9348 7.6112 29 1 0.2364 -3.0431 6.7492 30 1 1.6743 -2.7309 4.7785 31 1 0.3567 -1.7032 -2.0218 32 1 -0.2542 -3.3430 -1.5353 33 1 1.7588 -4.1397 -2.6834 34 1 2.6178 -2.5620 -2.4151 35 1 1.7505 -4.6487 -0.2860 36 1 3.2017 -3.5572 -0.2511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343408970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:09 Heat of formation + Delta-G solvation = -91.739484 kcal Electronic energy + Delta-G solvation = -21442.874366 eV Core-core repulsion = 18000.098935 eV Total energy + Delta-G solvation = -3442.775431 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.70505 -39.61499 -38.55996 -36.86330 -34.16782 -32.33111 -32.16533 -30.83979 -27.09592 -26.05727 -24.56200 -23.47318 -22.46113 -22.05193 -19.94018 -18.58513 -17.32729 -16.67129 -16.04088 -15.99772 -15.79276 -15.16718 -14.84278 -14.45420 -14.26079 -14.21052 -13.80799 -13.45975 -13.29522 -12.76420 -12.35859 -12.11082 -11.61663 -11.35977 -11.18858 -11.06178 -10.98736 -10.91377 -10.80354 -10.41007 -10.26857 -9.96201 -9.81520 -9.36757 -8.82500 -8.81574 -8.73753 -8.55413 -8.52285 -6.13072 -4.23065 1.01304 1.54514 3.24907 3.32997 3.34594 3.38674 3.91651 4.32426 4.37166 4.44483 4.61350 4.77527 5.10054 5.11569 5.17967 5.52078 5.56193 5.60957 5.69901 5.75421 5.87149 5.96082 6.06580 6.17026 6.32658 6.47559 6.51726 6.54643 6.63091 6.74281 6.88677 7.01895 7.09489 7.29911 7.54865 7.76555 7.88326 8.34810 8.81000 9.19482 9.45727 10.91318 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.005225 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.005032 B = 5357.565943 C = 5982.530968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.074 3.926 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.069 0.931 9 C 0.238 3.762 10 O -0.344 6.344 11 C 0.505 3.495 12 O -0.499 6.499 13 C -0.092 4.092 14 C -0.065 4.065 15 C -0.113 4.113 16 C -0.126 4.126 17 C 0.108 3.892 18 F -0.212 7.212 19 C -0.113 4.113 20 C -0.069 4.069 21 C -0.106 4.106 22 C -0.131 4.131 23 C -0.160 4.160 24 H 0.263 0.737 25 H 0.143 0.857 26 H 0.128 0.872 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -8.134 8.178 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.546 4.546 8 H 0.087 0.913 9 C 0.205 3.795 10 O -0.260 6.260 11 C 0.348 3.652 12 O -0.389 6.389 13 C -0.093 4.093 14 C -0.083 4.083 15 C -0.131 4.131 16 C -0.126 4.126 17 C 0.053 3.947 18 F -0.193 7.193 19 C -0.131 4.131 20 C -0.087 4.087 21 C -0.144 4.144 22 C -0.168 4.168 23 C -0.198 4.198 24 H 0.073 0.927 25 H 0.160 0.840 26 H 0.145 0.855 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.517 -7.945 8.093 12.207 hybrid contribution 0.459 1.122 0.074 1.214 sum -4.058 -6.823 8.167 11.389 Atomic orbital electron populations 1.70016 1.05840 1.27170 1.46930 1.25066 0.94894 0.99374 0.93835 0.86568 0.80244 0.82913 0.78266 1.20278 1.21114 1.19595 1.20941 0.93966 0.88592 1.51134 0.91310 1.21276 0.85997 0.92137 0.80126 1.86490 1.46308 1.78751 1.14481 1.20523 0.86207 0.74385 0.84134 1.90718 1.16497 1.44226 1.87451 1.19830 0.94022 1.02686 0.92774 1.21568 0.92542 0.94410 0.99759 1.20996 0.99900 1.00700 0.91547 1.20348 0.94743 1.02503 0.95008 1.20808 0.97350 0.81993 0.94550 1.92815 1.89772 1.45664 1.91071 1.20899 0.92745 1.00751 0.98739 1.21292 1.00857 0.95828 0.90742 1.22881 0.95108 1.00175 0.96223 1.22515 0.99303 0.99487 0.95519 1.23567 1.00977 0.98628 0.96580 0.92680 0.83966 0.85456 0.89893 0.89959 0.85460 0.84461 0.90596 0.92291 0.92980 0.90224 0.92119 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.19 12.58 55.43 0.70 -23.50 16 2 C 0.07 2.04 5.20 -17.82 -0.09 1.94 16 3 Si 0.89 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.04 6.42 -34.44 -0.22 -14.26 16 8 H 0.07 1.96 7.82 -52.49 -0.41 1.55 16 9 C 0.24 5.98 0.49 -90.87 -0.04 5.94 16 10 O -0.34 -8.62 9.19 -40.52 -0.37 -8.99 16 11 C 0.50 12.09 7.49 34.61 0.26 12.35 16 12 O -0.50 -13.07 14.80 -19.25 -0.28 -13.35 16 13 C -0.09 -1.79 5.87 -104.99 -0.62 -2.41 16 14 C -0.06 -1.10 9.62 -39.17 -0.38 -1.48 16 15 C -0.11 -1.56 9.68 -39.64 -0.38 -1.94 16 16 C -0.13 -1.61 5.60 -104.52 -0.59 -2.20 16 17 C 0.11 1.04 7.67 36.01 0.28 1.32 16 18 F -0.21 -2.71 17.34 2.25 0.04 -2.67 16 19 C -0.11 -1.54 9.68 -39.64 -0.38 -1.92 16 20 C -0.07 -1.16 9.60 -39.17 -0.38 -1.54 16 21 C -0.11 -2.40 7.19 -25.92 -0.19 -2.59 16 22 C -0.13 -2.60 7.81 -25.92 -0.20 -2.80 16 23 C -0.16 -3.50 7.22 -25.82 -0.19 -3.69 16 24 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 25 H 0.14 2.44 7.61 -52.49 -0.40 2.04 16 26 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 30 H 0.14 2.28 7.65 -52.48 -0.40 1.88 16 31 H 0.08 1.85 7.64 -51.93 -0.40 1.46 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 316.30 15.07 4.77 4.77 Total: -1.00 -31.24 316.30 -7.84 -39.08 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.54 Total: 1.43 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.12 Total: -13.27 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.70 Total: -23.50 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.66 Total: -22.34 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.24 -7.84 -39.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343408970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.660 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds