Wall clock time and date at job start Mon Mar 30 2020 23:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00149 * 2 1 4 4 H 1.48500 * 109.47253 * 270.00434 * 3 2 1 5 5 H 1.48507 * 109.46871 * 30.00563 * 3 2 1 6 6 H 1.48503 * 109.47443 * 150.00174 * 3 2 1 7 7 C 1.37877 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00430 * 187.12258 * 7 2 1 9 9 C 1.50708 * 119.99466 * 7.12985 * 7 2 1 10 10 O 1.45208 * 112.90473 * 294.22631 * 9 7 2 11 11 C 1.34710 * 117.00081 * 307.25284 * 10 9 7 12 12 O 1.21477 * 120.00232 * 355.64922 * 11 10 9 13 13 C 1.47722 * 119.99861 * 175.64647 * 11 10 9 14 14 C 1.39627 * 120.14987 * 359.72163 * 13 11 10 15 15 C 1.37944 * 119.84730 * 179.78987 * 14 13 11 16 16 C 1.38370 * 120.14857 * 0.49183 * 15 14 13 17 17 C 1.50707 * 119.84675 * 179.76319 * 16 15 14 18 18 F 1.39901 * 109.47252 * 269.97832 * 17 16 15 19 19 C 1.38364 * 120.30407 * 359.74140 * 16 15 14 20 20 C 1.37944 * 120.14886 * 0.02562 * 19 16 15 21 21 C 1.53770 * 113.61807 * 65.48067 * 9 7 2 22 22 C 1.53783 * 87.17529 * 89.15705 * 21 9 7 23 23 C 1.53782 * 87.07837 * 25.39265 * 22 21 9 24 24 H 0.97006 * 120.00227 * 354.98214 * 1 2 3 25 25 H 1.07995 * 120.07502 * 0.02562 * 14 13 11 26 26 H 1.07998 * 119.92552 * 180.23397 * 15 14 13 27 27 H 1.09004 * 109.46937 * 29.98317 * 17 16 15 28 28 H 1.09000 * 109.46878 * 149.97490 * 17 16 15 29 29 H 1.08002 * 119.92762 * 179.97438 * 19 16 15 30 30 H 1.08005 * 120.07112 * 179.97438 * 20 19 16 31 31 H 1.09000 * 113.61633 * 334.56865 * 21 9 7 32 32 H 1.09000 * 113.61856 * 203.74562 * 21 9 7 33 33 H 1.09005 * 113.61455 * 139.93746 * 22 21 9 34 34 H 1.08997 * 113.61285 * 270.75911 * 22 21 9 35 35 H 1.08996 * 113.61760 * 89.11992 * 23 22 21 36 36 H 1.08999 * 113.61510 * 219.93833 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0782 -1.1977 0.1154 9 6 1.2597 -2.4940 -0.1631 10 8 0.3758 -2.7822 0.9523 11 6 0.9159 -2.7461 2.1859 12 8 2.1085 -2.5592 2.3215 13 6 0.0578 -2.9335 3.3736 14 6 -1.3143 -3.1427 3.2216 15 6 -2.1090 -3.3213 4.3348 16 6 -1.5509 -3.2835 5.6004 17 6 -2.4264 -3.4742 6.8122 18 9 -2.9064 -2.2320 7.2410 19 6 -0.1928 -3.0719 5.7585 20 6 0.6143 -2.8965 4.6537 21 6 0.5886 -2.6518 -1.5376 22 6 1.9034 -3.2854 -2.0221 23 6 2.1626 -3.6769 -0.5577 24 1 -0.4851 0.8369 0.0735 25 1 -1.7517 -3.1683 2.2345 26 1 -3.1699 -3.4869 4.2185 27 1 -3.2666 -4.1195 6.5555 28 1 -1.8455 -3.9348 7.6112 29 1 0.2364 -3.0431 6.7492 30 1 1.6743 -2.7309 4.7785 31 1 0.3567 -1.7032 -2.0218 32 1 -0.2542 -3.3430 -1.5353 33 1 1.7588 -4.1397 -2.6834 34 1 2.6178 -2.5620 -2.4151 35 1 1.7505 -4.6487 -0.2860 36 1 3.2017 -3.5572 -0.2511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343408970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:08 Heat of formation + Delta-G solvation = -108.044420 kcal Electronic energy + Delta-G solvation = -21443.581401 eV Core-core repulsion = 18000.098935 eV Total energy + Delta-G solvation = -3443.482466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.56462 -41.26824 -40.02653 -38.61721 -36.05356 -34.39458 -33.38643 -32.04115 -28.49212 -27.80479 -26.36423 -25.14733 -23.66558 -23.47021 -21.43821 -20.49257 -19.01277 -18.25041 -17.23933 -17.12702 -16.87133 -16.79010 -16.73776 -16.15554 -15.76852 -15.61435 -15.33055 -14.93761 -14.46031 -14.36738 -13.81333 -13.61905 -13.51515 -13.03245 -12.94691 -12.81361 -12.28651 -12.20791 -12.15462 -12.06012 -11.86577 -11.79573 -11.64773 -11.20909 -10.81644 -10.54750 -10.43718 -10.01839 -9.99991 -8.22574 -6.37922 -0.29495 0.35303 1.31665 1.33487 1.43794 1.80447 2.27859 2.34921 2.83131 3.08997 3.49497 3.73757 3.92265 3.96073 4.00274 4.09918 4.16247 4.18772 4.35190 4.39462 4.50389 4.62663 4.70627 4.84575 4.86122 4.91836 5.00570 5.13495 5.22023 5.34572 5.36700 5.42121 5.44660 5.62430 5.76732 5.83501 5.94224 6.41094 6.65311 7.26534 7.38391 8.80944 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.005225 C = 0.004679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.005032 B = 5357.565943 C = 5982.530968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.033 3.967 3 Si 0.946 3.054 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.522 4.522 8 H 0.046 0.954 9 C 0.209 3.791 10 O -0.353 6.353 11 C 0.496 3.504 12 O -0.538 6.538 13 C -0.130 4.130 14 C -0.075 4.075 15 C -0.106 4.106 16 C -0.113 4.113 17 C 0.106 3.894 18 F -0.229 7.229 19 C -0.104 4.104 20 C -0.080 4.080 21 C -0.103 4.103 22 C -0.110 4.110 23 C -0.154 4.154 24 H 0.264 0.736 25 H 0.131 0.869 26 H 0.162 0.838 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.164 0.836 30 H 0.128 0.872 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 -9.070 9.668 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.171 4.171 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.559 4.559 8 H 0.064 0.936 9 C 0.175 3.825 10 O -0.269 6.269 11 C 0.341 3.659 12 O -0.430 6.430 13 C -0.132 4.132 14 C -0.094 4.094 15 C -0.124 4.124 16 C -0.114 4.114 17 C 0.051 3.949 18 F -0.210 7.210 19 C -0.122 4.122 20 C -0.098 4.098 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.192 4.192 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.182 0.818 30 H 0.146 0.854 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.964 -8.887 9.574 14.360 hybrid contribution 0.860 1.348 -0.270 1.621 sum -5.105 -7.539 9.304 13.017 Atomic orbital electron populations 1.70097 1.06672 1.27686 1.47790 1.25684 0.95695 1.02008 0.93670 0.85758 0.78634 0.79658 0.78870 1.18660 1.20631 1.20484 1.20999 0.93091 0.90390 1.51432 0.93577 1.21571 0.87342 0.92514 0.81054 1.86463 1.46387 1.78866 1.15224 1.21371 0.86524 0.73094 0.84870 1.90670 1.18135 1.46345 1.87871 1.19725 0.94741 1.06868 0.91831 1.21557 0.91809 0.95307 1.00699 1.21360 1.01169 0.99041 0.90832 1.20848 0.94894 0.99517 0.96115 1.21119 0.98366 0.81552 0.93828 1.92789 1.89982 1.47099 1.91117 1.21294 0.92989 0.98849 0.99079 1.21365 1.01052 0.96592 0.90831 1.22849 0.96858 0.99657 0.94754 1.22434 0.97098 1.00357 0.94810 1.23514 0.99527 0.98191 0.97992 0.92686 0.85122 0.82068 0.86764 0.86714 0.81849 0.85373 0.92936 0.90877 0.88889 0.90641 0.90629 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.96 12.58 21.45 0.27 -50.69 16 2 C 0.03 1.84 5.20 84.66 0.44 2.28 16 3 Si 0.95 45.18 29.55 68.60 2.03 47.21 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.52 -29.91 6.42 25.60 0.16 -29.75 16 8 H 0.05 2.77 7.82 -2.92 -0.02 2.75 16 9 C 0.21 10.82 0.49 -10.95 -0.01 10.81 16 10 O -0.35 -18.42 9.19 -56.20 -0.52 -18.94 16 11 C 0.50 24.97 7.49 70.33 0.53 25.50 16 12 O -0.54 -29.83 14.80 19.91 0.29 -29.53 16 13 C -0.13 -5.25 5.87 -20.10 -0.12 -5.37 16 14 C -0.08 -2.57 9.62 22.54 0.22 -2.35 16 15 C -0.11 -2.65 9.68 22.23 0.22 -2.44 16 16 C -0.11 -2.50 5.60 -19.80 -0.11 -2.61 16 17 C 0.11 1.51 7.67 71.24 0.55 2.06 16 18 F -0.23 -4.93 17.34 44.97 0.78 -4.15 16 19 C -0.10 -2.56 9.68 22.23 0.22 -2.35 16 20 C -0.08 -2.70 9.60 22.54 0.22 -2.49 16 21 C -0.10 -4.72 7.19 31.12 0.22 -4.49 16 22 C -0.11 -4.27 7.81 31.12 0.24 -4.02 16 23 C -0.15 -6.85 7.22 31.18 0.23 -6.62 16 24 H 0.26 14.50 8.32 -92.70 -0.77 13.73 16 25 H 0.13 4.64 7.61 -2.91 -0.02 4.61 16 26 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.11 1.01 8.08 -2.38 -0.02 0.99 16 28 H 0.11 0.99 8.08 -2.39 -0.02 0.97 16 29 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 30 H 0.13 4.43 7.65 -2.91 -0.02 4.41 16 31 H 0.05 2.61 7.64 -2.39 -0.02 2.59 16 32 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 34 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.05 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -71.48 316.30 6.94 -64.54 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.08 Total: 13.41 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 3.00 Total: -21.84 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.27 Total: -50.69 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.22 Total: -48.47 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.78 Total: -4.15 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.48 6.94 -64.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343408970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.501 kcal (2) G-P(sol) polarization free energy of solvation -71.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds