Wall clock time and date at job start Tue Mar 31 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38244 * 119.93803 * 2 1 4 4 C 1.38434 * 120.35070 * 179.97438 * 3 2 1 5 5 C 1.37881 * 120.22080 * 0.25637 * 4 3 2 6 6 C 1.39678 * 119.87276 * 359.49173 * 5 4 3 7 7 C 1.47569 * 120.16736 * 180.25589 * 6 5 4 8 8 O 1.21488 * 119.99622 * 180.24759 * 7 6 5 9 9 O 1.34727 * 120.00145 * 0.25020 * 7 6 5 10 10 C 1.45204 * 116.99751 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47480 * 29.99910 * 10 9 7 12 12 C 1.50700 * 109.47164 * 150.00002 * 10 9 7 13 13 H 1.07999 * 120.00113 * 359.97438 * 12 10 9 14 14 C 1.37879 * 120.00115 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99992 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99974 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47218 * 60.00005 * 16 14 12 18 18 H 1.48494 * 109.47255 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47155 * 300.00122 * 16 14 12 20 20 C 1.53000 * 109.47437 * 270.00012 * 10 9 7 21 21 C 1.52993 * 117.50201 * 128.74278 * 20 10 9 22 22 C 1.52996 * 117.49656 * 60.08336 * 20 10 9 23 23 C 1.38271 * 119.93761 * 179.97438 * 2 1 3 24 24 F 1.35104 * 120.11489 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.46983 * 90.00598 * 1 2 3 26 26 H 1.09006 * 109.47443 * 210.00026 * 1 2 3 27 27 H 1.08994 * 109.47420 * 330.00222 * 1 2 3 28 28 H 1.08000 * 119.82950 * 359.94791 * 3 2 1 29 29 H 1.08002 * 119.88557 * 179.97438 * 4 3 2 30 30 H 1.08002 * 120.05798 * 179.74163 * 5 4 3 31 31 H 0.96999 * 119.99994 * 180.02562 * 15 14 12 32 32 H 1.09005 * 115.54729 * 274.42181 * 20 10 9 33 33 H 1.09005 * 117.49777 * 0.02562 * 21 20 10 34 34 H 1.09006 * 117.49947 * 145.02136 * 21 20 10 35 35 H 1.09005 * 117.50087 * 214.98351 * 22 20 10 36 36 H 1.08998 * 117.50358 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1980 0.0000 4 6 3.5812 1.2079 0.0005 5 6 4.2838 0.0216 -0.0043 6 6 3.5962 -1.1942 0.0011 7 6 4.3416 -2.4678 0.0017 8 8 3.7403 -3.5235 0.0018 9 8 5.6888 -2.4598 0.0022 10 6 6.3556 -3.7497 0.0022 11 1 5.7321 -4.4811 -0.5120 12 6 7.6796 -3.6308 -0.7077 13 1 7.9888 -2.6809 -1.1182 14 6 8.4962 -4.7346 -0.8331 15 7 8.1195 -5.8914 -0.3336 16 14 10.1370 -4.5873 -1.7137 17 1 10.9865 -3.5903 -1.0141 18 1 10.8191 -5.9064 -1.7136 19 1 9.9097 -4.1483 -3.1140 20 6 6.5893 -4.2031 1.4447 21 6 6.1248 -5.6097 1.8272 22 6 5.3591 -4.3858 2.3358 23 6 2.1970 -1.1982 0.0005 24 9 1.5226 -2.3689 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.6531 2.1311 -0.0009 29 1 4.1126 2.1482 0.0001 30 1 5.3637 0.0324 -0.0080 31 1 8.6942 -6.6679 -0.4216 32 1 7.4993 -3.8286 1.9136 33 1 5.6530 -6.2124 1.0510 34 1 6.7290 -6.1607 2.5480 35 1 5.4599 -4.1319 3.3911 36 1 4.3833 -4.1834 1.8944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345547328.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:26 Heat of formation + Delta-G solvation = -85.584594 kcal Electronic energy + Delta-G solvation = -21541.412325 eV Core-core repulsion = 18098.903789 eV Total energy + Delta-G solvation = -3442.508535 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.75961 -39.84656 -38.67125 -36.32055 -34.86595 -33.06546 -32.62488 -30.83260 -27.94225 -27.05309 -24.47521 -22.99877 -21.80717 -21.22912 -20.55606 -19.18813 -17.61064 -17.13272 -16.75002 -16.12008 -15.79191 -15.67057 -15.01541 -14.76766 -14.50757 -13.91066 -13.68268 -13.50878 -13.17041 -12.90800 -12.68592 -12.52442 -11.92214 -11.88422 -11.48588 -11.35130 -11.28963 -11.04823 -10.92294 -10.41285 -10.28248 -9.83279 -9.71776 -9.36358 -9.02292 -9.00938 -8.69207 -8.64406 -8.41977 -6.14417 -4.22789 0.70561 1.10696 2.94958 3.27226 3.30123 3.31814 3.48243 3.77753 4.19090 4.34239 4.53076 4.74082 4.92153 5.03790 5.13229 5.15855 5.22589 5.41314 5.54355 5.70646 5.81413 5.94999 5.98709 6.10969 6.17845 6.20074 6.26626 6.41925 6.58326 6.67066 6.76387 7.02422 7.18085 7.26603 7.39961 7.62002 7.85150 8.10223 8.59646 8.87470 9.41581 10.92306 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024925 B = 0.004928 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.102001 B = 5680.328986 C = 6305.491948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C -0.069 4.069 4 C -0.143 4.143 5 C -0.039 4.039 6 C -0.146 4.146 7 C 0.495 3.505 8 O -0.502 6.502 9 O -0.345 6.345 10 C 0.250 3.750 11 H 0.049 0.951 12 C -0.529 4.529 13 H 0.069 0.931 14 C 0.070 3.930 15 N -0.872 5.872 16 Si 0.908 3.092 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.230 4.230 23 C 0.155 3.845 24 F -0.114 7.114 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.265 0.735 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 13.103 1.916 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C -0.087 4.087 4 C -0.161 4.161 5 C -0.057 4.057 6 C -0.149 4.149 7 C 0.339 3.661 8 O -0.393 6.393 9 O -0.261 6.261 10 C 0.198 3.802 11 H 0.067 0.933 12 C -0.567 4.567 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.508 5.508 16 Si 0.735 3.265 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.134 4.134 21 C -0.160 4.160 22 C -0.267 4.267 23 C 0.135 3.865 24 F -0.092 7.092 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.168 0.832 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.752 12.488 1.938 16.592 hybrid contribution 0.899 -0.438 -0.331 1.054 sum -9.853 12.050 1.607 15.648 Atomic orbital electron populations 1.20702 0.89755 1.03402 1.02890 1.19855 0.97233 0.91507 1.05493 1.21101 0.94280 0.96879 0.96416 1.21189 0.93998 0.98465 1.02461 1.21515 1.01560 0.90135 0.92534 1.19557 0.91459 0.93932 1.09904 1.20681 0.83360 0.88079 0.73963 1.90805 1.70222 1.32715 1.45524 1.86522 1.17271 1.40576 1.81738 1.20255 0.91639 0.76762 0.91587 0.93311 1.20848 1.01646 0.96918 1.37259 0.91316 1.24874 0.98444 0.94824 0.95326 1.70039 1.37245 0.99986 1.43521 0.86411 0.82768 0.77297 0.80070 1.20010 1.21109 1.20053 1.22599 0.95188 0.99754 0.95892 1.22365 1.01538 0.90602 1.01476 1.23283 0.98123 1.06765 0.98484 1.17574 0.88360 0.81636 0.98899 1.91575 1.79509 1.45403 1.92719 0.90778 0.91051 0.90892 0.84769 0.84637 0.83159 0.92544 0.89265 0.89309 0.90752 0.91019 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.83 36.01 0.35 -0.65 16 2 C -0.14 -1.67 5.88 -104.61 -0.62 -2.29 16 3 C -0.07 -0.67 9.69 -39.51 -0.38 -1.05 16 4 C -0.14 -1.50 10.03 -39.64 -0.40 -1.89 16 5 C -0.04 -0.55 9.61 -39.17 -0.38 -0.93 16 6 C -0.15 -2.56 5.88 -104.93 -0.62 -3.17 16 7 C 0.50 10.94 7.11 34.54 0.25 11.18 16 8 O -0.50 -12.33 12.43 -19.26 -0.24 -12.57 16 9 O -0.34 -8.22 9.10 -40.57 -0.37 -8.59 16 10 C 0.25 6.65 2.25 -27.88 -0.06 6.58 16 11 H 0.05 1.45 6.92 -51.93 -0.36 1.09 16 12 C -0.53 -14.64 8.88 -34.44 -0.31 -14.94 16 13 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 14 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 15 N -0.87 -24.24 11.43 55.43 0.63 -23.61 16 16 Si 0.91 20.87 29.54 -169.99 -5.02 15.84 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 20 C -0.12 -2.87 4.47 -90.63 -0.41 -3.28 16 21 C -0.12 -2.89 9.04 -26.70 -0.24 -3.13 16 22 C -0.23 -5.13 9.80 -26.70 -0.26 -5.39 16 23 C 0.16 2.48 7.23 -38.94 -0.28 2.20 16 24 F -0.11 -2.06 14.76 2.25 0.03 -2.02 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.69 7.64 -51.93 -0.40 0.30 16 27 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.15 2.06 7.61 -52.49 -0.40 1.66 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.09 2.26 8.11 -51.93 -0.42 1.84 16 33 H 0.09 2.24 8.05 -51.93 -0.42 1.82 16 34 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.09 2.19 5.37 -51.93 -0.28 1.91 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -30.72 312.01 -8.05 -38.77 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.35 Total: 2.45 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.44 Total: -14.97 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.63 Total: -23.61 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.61 Total: -21.16 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.03 Total: -2.02 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.72 -8.05 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547328.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.815 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds