Wall clock time and date at job start Tue Mar 31 2020 00:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38244 * 119.93803 * 2 1 4 4 C 1.38434 * 120.35070 * 179.97438 * 3 2 1 5 5 C 1.37881 * 120.22080 * 0.25637 * 4 3 2 6 6 C 1.39678 * 119.87276 * 359.49173 * 5 4 3 7 7 C 1.47569 * 120.16736 * 180.25589 * 6 5 4 8 8 O 1.21488 * 119.99622 * 180.24759 * 7 6 5 9 9 O 1.34727 * 120.00145 * 0.25020 * 7 6 5 10 10 C 1.45204 * 116.99751 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47480 * 29.99910 * 10 9 7 12 12 C 1.50700 * 109.47164 * 150.00002 * 10 9 7 13 13 H 1.07999 * 120.00113 * 359.97438 * 12 10 9 14 14 C 1.37879 * 120.00115 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99992 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99974 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47218 * 60.00005 * 16 14 12 18 18 H 1.48494 * 109.47255 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47155 * 300.00122 * 16 14 12 20 20 C 1.53000 * 109.47437 * 270.00012 * 10 9 7 21 21 C 1.52993 * 117.50201 * 128.74278 * 20 10 9 22 22 C 1.52996 * 117.49656 * 60.08336 * 20 10 9 23 23 C 1.38271 * 119.93761 * 179.97438 * 2 1 3 24 24 F 1.35104 * 120.11489 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.46983 * 90.00598 * 1 2 3 26 26 H 1.09006 * 109.47443 * 210.00026 * 1 2 3 27 27 H 1.08994 * 109.47420 * 330.00222 * 1 2 3 28 28 H 1.08000 * 119.82950 * 359.94791 * 3 2 1 29 29 H 1.08002 * 119.88557 * 179.97438 * 4 3 2 30 30 H 1.08002 * 120.05798 * 179.74163 * 5 4 3 31 31 H 0.96999 * 119.99994 * 180.02562 * 15 14 12 32 32 H 1.09005 * 115.54729 * 274.42181 * 20 10 9 33 33 H 1.09005 * 117.49777 * 0.02562 * 21 20 10 34 34 H 1.09006 * 117.49947 * 145.02136 * 21 20 10 35 35 H 1.09005 * 117.50087 * 214.98351 * 22 20 10 36 36 H 1.08998 * 117.50358 * 0.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1980 0.0000 4 6 3.5812 1.2079 0.0005 5 6 4.2838 0.0216 -0.0043 6 6 3.5962 -1.1942 0.0011 7 6 4.3416 -2.4678 0.0017 8 8 3.7403 -3.5235 0.0018 9 8 5.6888 -2.4598 0.0022 10 6 6.3556 -3.7497 0.0022 11 1 5.7321 -4.4811 -0.5120 12 6 7.6796 -3.6308 -0.7077 13 1 7.9888 -2.6809 -1.1182 14 6 8.4962 -4.7346 -0.8331 15 7 8.1195 -5.8914 -0.3336 16 14 10.1370 -4.5873 -1.7137 17 1 10.9865 -3.5903 -1.0141 18 1 10.8191 -5.9064 -1.7136 19 1 9.9097 -4.1483 -3.1140 20 6 6.5893 -4.2031 1.4447 21 6 6.1248 -5.6097 1.8272 22 6 5.3591 -4.3858 2.3358 23 6 2.1970 -1.1982 0.0005 24 9 1.5226 -2.3689 0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.6531 2.1311 -0.0009 29 1 4.1126 2.1482 0.0001 30 1 5.3637 0.0324 -0.0080 31 1 8.6942 -6.6679 -0.4216 32 1 7.4993 -3.8286 1.9136 33 1 5.6530 -6.2124 1.0510 34 1 6.7290 -6.1607 2.5480 35 1 5.4599 -4.1319 3.3911 36 1 4.3833 -4.1834 1.8944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345547328.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:26 Heat of formation + Delta-G solvation = -101.769693 kcal Electronic energy + Delta-G solvation = -21542.114163 eV Core-core repulsion = 18098.903789 eV Total energy + Delta-G solvation = -3443.210374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.01999 -41.49187 -39.87445 -38.19995 -36.75069 -34.73977 -34.02313 -31.91301 -29.92880 -27.96565 -26.01334 -24.81877 -23.13353 -22.79902 -22.15077 -21.12030 -19.17139 -18.51240 -18.40226 -17.66522 -17.29069 -17.14631 -16.67307 -16.46323 -15.75850 -15.65707 -14.98736 -14.65316 -14.37253 -14.32635 -14.22870 -13.62570 -13.35137 -13.31517 -13.01453 -12.88307 -12.77703 -12.69741 -12.32224 -12.28169 -12.17638 -11.83384 -11.50275 -11.29037 -10.98396 -10.65372 -10.47428 -10.06940 -9.70664 -8.22634 -6.40743 -0.45615 0.11615 1.41997 1.45707 1.52496 1.53622 1.84140 2.41184 2.58470 3.04315 3.09807 3.16540 3.58399 3.77213 3.91119 4.05061 4.11181 4.23862 4.25519 4.38870 4.45698 4.70419 4.74657 4.76389 4.81259 4.88734 5.06078 5.11632 5.19910 5.21447 5.24827 5.31248 5.34160 5.43493 5.51402 5.79000 5.80858 6.06823 6.60849 6.89616 7.28637 8.83800 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024925 B = 0.004928 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.102001 B = 5680.328986 C = 6305.491948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.134 4.134 3 C -0.044 4.044 4 C -0.124 4.124 5 C -0.048 4.048 6 C -0.182 4.182 7 C 0.488 3.512 8 O -0.541 6.541 9 O -0.350 6.350 10 C 0.254 3.746 11 H 0.003 0.997 12 C -0.557 4.557 13 H 0.067 0.933 14 C 0.025 3.975 15 N -0.896 5.896 16 Si 0.978 3.022 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.271 1.271 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.204 4.204 23 C 0.123 3.877 24 F -0.138 7.138 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.188 0.812 29 H 0.179 0.821 30 H 0.145 0.855 31 H 0.268 0.732 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 16.611 2.280 20.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.134 4.134 3 C -0.062 4.062 4 C -0.141 4.141 5 C -0.066 4.066 6 C -0.184 4.184 7 C 0.335 3.665 8 O -0.434 6.434 9 O -0.266 6.266 10 C 0.201 3.799 11 H 0.021 0.979 12 C -0.595 4.595 13 H 0.085 0.915 14 C -0.177 4.177 15 N -0.531 5.531 16 Si 0.801 3.199 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.196 1.196 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.241 4.241 23 C 0.104 3.896 24 F -0.116 7.116 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.126 0.874 28 H 0.205 0.795 29 H 0.197 0.803 30 H 0.163 0.837 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.020 16.017 2.309 19.578 hybrid contribution 0.860 -1.411 -0.464 1.717 sum -10.160 14.605 1.845 17.887 Atomic orbital electron populations 1.20820 0.87538 1.04478 1.03930 1.20305 0.98852 0.90528 1.03761 1.21741 0.94113 0.97775 0.92531 1.21669 0.94570 0.98373 0.99529 1.21627 1.01590 0.90326 0.93057 1.19467 0.92007 0.92628 1.14317 1.21617 0.82528 0.89798 0.72540 1.90765 1.70434 1.34640 1.47523 1.86503 1.18771 1.39031 1.82290 1.19917 0.90726 0.76981 0.92260 0.97913 1.21128 1.02445 0.97377 1.38504 0.91488 1.25756 1.01992 0.94203 0.95724 1.70167 1.38448 1.00541 1.43978 0.85319 0.78061 0.77675 0.78813 1.18864 1.20374 1.19637 1.22435 0.96141 1.00826 0.95476 1.22285 1.01875 0.90305 1.01258 1.23247 0.96322 1.04894 0.99597 1.18047 0.88037 0.82429 1.01113 1.91505 1.79796 1.47115 1.93219 0.89656 0.92450 0.87372 0.79520 0.80324 0.83690 0.92325 0.89673 0.91872 0.88852 0.87692 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.83 71.24 0.70 -0.97 16 2 C -0.13 -2.84 5.88 -19.86 -0.12 -2.96 16 3 C -0.04 -0.63 9.69 22.32 0.22 -0.41 16 4 C -0.12 -2.06 10.03 22.23 0.22 -1.83 16 5 C -0.05 -1.29 9.61 22.53 0.22 -1.08 16 6 C -0.18 -6.59 5.88 -20.06 -0.12 -6.71 16 7 C 0.49 23.13 7.11 70.28 0.50 23.63 16 8 O -0.54 -28.89 12.43 19.87 0.25 -28.64 16 9 O -0.35 -17.76 9.10 -56.37 -0.51 -18.27 16 10 C 0.25 14.37 2.25 29.85 0.07 14.43 16 11 H 0.00 0.20 6.92 -2.39 -0.02 0.18 16 12 C -0.56 -32.08 8.88 25.60 0.23 -31.85 16 13 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 14 C 0.03 1.41 5.30 84.65 0.45 1.86 16 15 N -0.90 -51.20 11.43 21.45 0.25 -50.96 16 16 Si 0.98 43.13 29.54 68.60 2.03 45.15 16 17 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 20 C -0.13 -6.73 4.47 -10.80 -0.05 -6.78 16 21 C -0.12 -5.87 9.04 30.61 0.28 -5.59 16 22 C -0.20 -9.33 9.80 30.62 0.30 -9.03 16 23 C 0.12 4.01 7.23 22.68 0.16 4.18 16 24 F -0.14 -5.31 14.76 44.97 0.66 -4.64 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.04 7.64 -2.38 -0.02 1.02 16 27 H 0.11 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 29 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.15 3.98 7.61 -2.91 -0.02 3.96 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.09 4.44 8.11 -2.38 -0.02 4.42 16 33 H 0.06 3.39 8.05 -2.38 -0.02 3.37 16 34 H 0.09 4.15 8.14 -2.38 -0.02 4.13 16 35 H 0.10 4.08 8.14 -2.38 -0.02 4.06 16 36 H 0.08 3.85 5.37 -2.39 -0.01 3.84 16 Total: -1.00 -73.25 312.01 6.82 -66.43 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.09 Total: 14.03 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 3.06 Total: -23.11 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.25 Total: -50.96 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.27 Total: -46.91 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.66 Total: -4.64 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -73.25 6.82 -66.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345547328.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.338 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds