Wall clock time and date at job start Tue Mar 31 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37841 * 119.93559 * 2 1 4 4 C 1.39685 * 119.87374 * 180.02562 * 3 2 1 5 5 C 1.47595 * 120.12427 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99873 * 0.02562 * 5 4 3 7 7 O 1.34729 * 120.00053 * 180.02562 * 5 4 3 8 8 C 1.45202 * 117.00089 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46624 * 330.00041 * 8 7 5 10 10 C 1.50696 * 109.47112 * 209.99801 * 8 7 5 11 11 H 1.08008 * 120.00077 * 0.02562 * 10 8 7 12 12 C 1.37872 * 120.00243 * 179.97438 * 10 8 7 13 13 N 1.31514 * 120.00344 * 180.02562 * 12 10 8 14 14 Si 1.86802 * 119.99743 * 359.97438 * 12 10 8 15 15 H 1.48500 * 109.47053 * 90.00163 * 14 12 10 16 16 H 1.48501 * 109.47280 * 209.99992 * 14 12 10 17 17 H 1.48494 * 109.47359 * 330.00569 * 14 12 10 18 18 C 1.53001 * 109.47076 * 89.99691 * 8 7 5 19 19 C 1.53005 * 117.49873 * 8.74990 * 18 8 7 20 20 C 1.52995 * 117.50122 * 300.08775 * 18 8 7 21 21 C 1.39723 * 119.75098 * 359.97438 * 4 3 2 22 22 C 1.37796 * 119.87940 * 0.02562 * 21 4 3 23 23 C 1.38638 * 119.93718 * 179.97438 * 2 1 3 24 24 F 1.35099 * 119.87949 * 0.27513 * 23 2 1 25 25 H 1.08997 * 109.47068 * 270.00453 * 1 2 3 26 26 H 1.09000 * 109.46731 * 30.00591 * 1 2 3 27 27 H 1.09000 * 109.46581 * 150.00464 * 1 2 3 28 28 H 1.07996 * 120.06291 * 359.97136 * 3 2 1 29 29 H 0.96998 * 119.99789 * 180.02562 * 13 12 10 30 30 H 1.09001 * 115.54594 * 154.41627 * 18 8 7 31 31 H 1.09004 * 117.49631 * 359.97438 * 19 18 8 32 32 H 1.09000 * 117.49692 * 145.02121 * 19 18 8 33 33 H 1.09000 * 117.49997 * 214.98036 * 20 18 8 34 34 H 1.09006 * 117.50121 * 359.97438 * 20 18 8 35 35 H 1.08000 * 120.06547 * 179.97438 * 21 4 3 36 36 H 1.08000 * 119.94515 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1950 1.1945 0.0000 4 6 3.5918 1.1930 -0.0005 5 6 4.3339 2.4688 -0.0011 6 8 3.7299 3.5229 -0.0006 7 8 5.6812 2.4645 -0.0022 8 6 6.3446 3.7561 -0.0033 9 1 5.7185 4.4856 -0.5169 10 6 7.6681 3.6404 -0.7146 11 1 7.9794 2.6911 -1.1252 12 6 8.4812 4.7465 -0.8421 13 7 9.6360 4.6457 -1.4634 14 14 7.9419 6.3887 -0.1338 15 1 8.4223 6.5056 1.2664 16 1 8.5151 7.4909 -0.9474 17 1 6.4597 6.4752 -0.1573 18 6 6.5787 4.2104 1.4389 19 6 6.2929 3.2011 2.5527 20 6 5.3494 4.3862 2.3325 21 6 4.2838 -0.0208 -0.0005 22 6 3.5859 -1.2089 -0.0005 23 6 2.1990 -1.2014 0.0005 24 9 1.5197 -2.3692 -0.0046 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 1.6550 2.1298 -0.0005 29 1 10.2081 5.4238 -1.5527 30 1 7.4102 4.8997 1.5855 31 1 5.9378 2.2136 2.2581 32 1 6.9362 3.2268 3.4323 33 1 5.3723 5.1910 3.0674 34 1 4.3737 4.1786 1.8930 35 1 5.3638 -0.0279 -0.0014 36 1 4.1197 -2.1478 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345548821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:30 Heat of formation + Delta-G solvation = -80.118707 kcal Electronic energy + Delta-G solvation = -21352.954401 eV Core-core repulsion = 17910.682884 eV Total energy + Delta-G solvation = -3442.271517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.15184 -40.29647 -38.82453 -36.73608 -35.05751 -33.17916 -32.76598 -31.00491 -28.77609 -27.19669 -24.40787 -22.76150 -22.37306 -21.80343 -20.85814 -19.44472 -17.78532 -17.50968 -16.93386 -16.42124 -16.01273 -15.92843 -15.87654 -14.90940 -14.46492 -13.89517 -13.65459 -13.55291 -13.44949 -13.38706 -13.00970 -12.73241 -12.27182 -12.14105 -11.91924 -11.74270 -11.43401 -11.16362 -10.97782 -10.79585 -10.25359 -10.16191 -9.91157 -9.67078 -9.37627 -9.15941 -8.85994 -8.82140 -8.71176 -6.26701 -4.29530 0.54671 1.04902 2.69361 3.15301 3.25875 3.30811 3.34807 3.65332 3.98667 4.23913 4.46888 4.49643 4.55425 4.94255 5.00140 5.01761 5.11204 5.35551 5.37695 5.50550 5.56748 5.64597 5.68422 5.74573 5.84206 5.97924 6.01478 6.14681 6.19104 6.28709 6.45176 6.62765 6.69492 6.73184 6.81291 7.21941 7.43300 8.14074 8.48374 8.79604 9.29837 10.84899 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.004537 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.026676 B = 6169.531982 C = 6458.180738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.135 4.135 3 C -0.033 4.033 4 C -0.122 4.122 5 C 0.498 3.502 6 O -0.511 6.511 7 O -0.332 6.332 8 C 0.226 3.774 9 H 0.054 0.946 10 C -0.521 4.521 11 H 0.089 0.911 12 C 0.082 3.918 13 N -0.886 5.886 14 Si 0.872 3.128 15 H -0.273 1.273 16 H -0.288 1.288 17 H -0.256 1.256 18 C -0.165 4.165 19 C -0.170 4.170 20 C -0.207 4.207 21 C -0.037 4.037 22 C -0.162 4.162 23 C 0.121 3.879 24 F -0.135 7.135 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.270 0.730 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.632 -9.312 4.913 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.136 4.136 3 C -0.051 4.051 4 C -0.123 4.123 5 C 0.343 3.657 6 O -0.403 6.403 7 O -0.247 6.247 8 C 0.173 3.827 9 H 0.071 0.929 10 C -0.558 4.558 11 H 0.107 0.893 12 C -0.121 4.121 13 N -0.522 5.522 14 Si 0.699 3.301 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.180 1.180 18 C -0.183 4.183 19 C -0.207 4.207 20 C -0.244 4.244 21 C -0.056 4.056 22 C -0.181 4.181 23 C 0.102 3.898 24 F -0.114 7.114 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.164 0.836 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.171 0.829 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.606 -8.924 4.835 17.786 hybrid contribution -0.068 0.848 0.463 0.969 sum -14.674 -8.076 5.298 17.567 Atomic orbital electron populations 1.20719 0.89621 1.03531 1.02966 1.19814 0.97327 0.91389 1.05057 1.21045 0.92283 0.98000 0.93762 1.19401 0.93276 0.92052 1.07577 1.20956 0.82997 0.88608 0.73177 1.90758 1.70119 1.33128 1.46266 1.86567 1.17670 1.38812 1.81654 1.20516 0.93085 0.78194 0.90943 0.92892 1.20688 0.99926 0.99092 1.36116 0.89323 1.24699 0.94408 0.98416 0.94614 1.69832 1.10148 1.30845 1.41420 0.87071 0.80461 0.83663 0.78864 1.19984 1.21439 1.17995 1.23432 0.98535 1.02399 0.93938 1.22763 1.03088 0.94841 1.00021 1.23265 0.96446 1.00639 1.04004 1.21473 1.01647 0.90064 0.92380 1.21135 0.91910 1.00082 1.04986 1.17829 0.90072 0.80893 1.01020 1.91487 1.80191 1.46185 1.93520 0.90693 0.90653 0.91092 0.83582 0.92004 0.87340 0.88912 0.89591 0.89897 0.88054 0.82885 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.83 36.01 0.35 -0.59 16 2 C -0.13 -1.52 5.88 -104.61 -0.62 -2.13 16 3 C -0.03 -0.42 9.24 -39.19 -0.36 -0.79 16 4 C -0.12 -1.85 5.87 -104.98 -0.62 -2.47 16 5 C 0.50 9.60 6.84 34.55 0.24 9.84 16 6 O -0.51 -10.78 13.44 -19.26 -0.26 -11.03 16 7 O -0.33 -7.19 7.63 -40.57 -0.31 -7.50 16 8 C 0.23 5.53 2.00 -27.88 -0.06 5.47 16 9 H 0.05 1.38 6.21 -51.93 -0.32 1.06 16 10 C -0.52 -14.50 9.48 -34.44 -0.33 -14.82 16 11 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 12 C 0.08 2.31 5.44 -17.82 -0.10 2.21 16 13 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 14 Si 0.87 21.15 24.48 -169.99 -4.16 16.99 16 15 H -0.27 -6.38 6.72 56.52 0.38 -6.00 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.26 -6.14 6.53 56.52 0.37 -5.77 16 18 C -0.16 -3.68 4.45 -90.62 -0.40 -4.09 16 19 C -0.17 -3.22 9.80 -26.69 -0.26 -3.48 16 20 C -0.21 -4.00 9.85 -26.69 -0.26 -4.26 16 21 C -0.04 -0.49 9.61 -39.19 -0.38 -0.87 16 22 C -0.16 -1.82 10.01 -39.57 -0.40 -2.22 16 23 C 0.12 1.39 7.25 -39.26 -0.28 1.11 16 24 F -0.14 -1.52 16.46 2.25 0.04 -1.48 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.07 0.56 7.63 -51.93 -0.40 0.17 16 28 H 0.15 1.81 7.65 -52.49 -0.40 1.41 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.11 2.54 4.40 -51.93 -0.23 2.31 16 31 H 0.09 1.71 6.91 -51.93 -0.36 1.35 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.10 2.02 5.36 -51.93 -0.28 1.74 16 35 H 0.15 1.99 7.61 -52.49 -0.40 1.59 16 36 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 304.58 15.07 4.59 4.59 Total: -1.00 -30.16 304.58 -6.90 -37.07 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.11 Total: 3.83 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -3.47 Total: -17.10 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.77 Total: -25.36 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.57 Total: -18.53 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.16 Total: 16.99 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.16 -6.90 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.049 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds