Wall clock time and date at job start Tue Mar 31 2020 00:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.37841 * 119.93559 * 2 1 4 4 C 1.39685 * 119.87374 * 180.02562 * 3 2 1 5 5 C 1.47595 * 120.12427 * 179.97438 * 4 3 2 6 6 O 1.21491 * 119.99873 * 0.02562 * 5 4 3 7 7 O 1.34729 * 120.00053 * 180.02562 * 5 4 3 8 8 C 1.45202 * 117.00089 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46624 * 330.00041 * 8 7 5 10 10 C 1.50696 * 109.47112 * 209.99801 * 8 7 5 11 11 H 1.08008 * 120.00077 * 0.02562 * 10 8 7 12 12 C 1.37872 * 120.00243 * 179.97438 * 10 8 7 13 13 N 1.31514 * 120.00344 * 180.02562 * 12 10 8 14 14 Si 1.86802 * 119.99743 * 359.97438 * 12 10 8 15 15 H 1.48500 * 109.47053 * 90.00163 * 14 12 10 16 16 H 1.48501 * 109.47280 * 209.99992 * 14 12 10 17 17 H 1.48494 * 109.47359 * 330.00569 * 14 12 10 18 18 C 1.53001 * 109.47076 * 89.99691 * 8 7 5 19 19 C 1.53005 * 117.49873 * 8.74990 * 18 8 7 20 20 C 1.52995 * 117.50122 * 300.08775 * 18 8 7 21 21 C 1.39723 * 119.75098 * 359.97438 * 4 3 2 22 22 C 1.37796 * 119.87940 * 0.02562 * 21 4 3 23 23 C 1.38638 * 119.93718 * 179.97438 * 2 1 3 24 24 F 1.35099 * 119.87949 * 0.27513 * 23 2 1 25 25 H 1.08997 * 109.47068 * 270.00453 * 1 2 3 26 26 H 1.09000 * 109.46731 * 30.00591 * 1 2 3 27 27 H 1.09000 * 109.46581 * 150.00464 * 1 2 3 28 28 H 1.07996 * 120.06291 * 359.97136 * 3 2 1 29 29 H 0.96998 * 119.99789 * 180.02562 * 13 12 10 30 30 H 1.09001 * 115.54594 * 154.41627 * 18 8 7 31 31 H 1.09004 * 117.49631 * 359.97438 * 19 18 8 32 32 H 1.09000 * 117.49692 * 145.02121 * 19 18 8 33 33 H 1.09000 * 117.49997 * 214.98036 * 20 18 8 34 34 H 1.09006 * 117.50121 * 359.97438 * 20 18 8 35 35 H 1.08000 * 120.06547 * 179.97438 * 21 4 3 36 36 H 1.08000 * 119.94515 * 179.97438 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1950 1.1945 0.0000 4 6 3.5918 1.1930 -0.0005 5 6 4.3339 2.4688 -0.0011 6 8 3.7299 3.5229 -0.0006 7 8 5.6812 2.4645 -0.0022 8 6 6.3446 3.7561 -0.0033 9 1 5.7185 4.4856 -0.5169 10 6 7.6681 3.6404 -0.7146 11 1 7.9794 2.6911 -1.1252 12 6 8.4812 4.7465 -0.8421 13 7 9.6360 4.6457 -1.4634 14 14 7.9419 6.3887 -0.1338 15 1 8.4223 6.5056 1.2664 16 1 8.5151 7.4909 -0.9474 17 1 6.4597 6.4752 -0.1573 18 6 6.5787 4.2104 1.4389 19 6 6.2929 3.2011 2.5527 20 6 5.3494 4.3862 2.3325 21 6 4.2838 -0.0208 -0.0005 22 6 3.5859 -1.2089 -0.0005 23 6 2.1990 -1.2014 0.0005 24 9 1.5197 -2.3692 -0.0046 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3632 -0.8901 -0.5138 28 1 1.6550 2.1298 -0.0005 29 1 10.2081 5.4238 -1.5527 30 1 7.4102 4.8997 1.5855 31 1 5.9378 2.2136 2.2581 32 1 6.9362 3.2268 3.4323 33 1 5.3723 5.1910 3.0674 34 1 4.3737 4.1786 1.8930 35 1 5.3638 -0.0279 -0.0014 36 1 4.1197 -2.1478 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548821.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:30 Heat of formation + Delta-G solvation = -96.196639 kcal Electronic energy + Delta-G solvation = -21353.651592 eV Core-core repulsion = 17910.682884 eV Total energy + Delta-G solvation = -3442.968708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.06765 -41.78734 -39.99438 -38.32226 -36.68878 -34.91985 -34.05596 -32.11415 -30.68025 -28.05521 -25.81436 -24.56857 -23.36247 -23.30895 -22.32869 -21.04516 -19.20599 -18.68511 -18.58554 -17.89052 -17.72270 -17.20651 -16.82528 -16.57443 -15.61701 -15.45078 -15.02779 -14.80925 -14.54185 -14.36798 -14.28010 -14.15485 -13.70631 -13.52956 -13.37098 -12.95969 -12.91291 -12.70458 -12.44233 -12.18060 -12.07039 -11.92894 -11.61181 -11.48406 -11.05789 -10.79221 -10.66894 -10.11853 -9.81186 -8.44294 -6.52469 -0.55552 0.10037 1.22764 1.31139 1.38737 1.42804 1.78223 2.20690 2.51238 2.82798 2.97231 3.03646 3.54973 3.62336 3.71458 3.87134 4.00133 4.03732 4.08797 4.10261 4.36977 4.58675 4.68301 4.71887 4.74605 4.78258 4.80462 4.97546 4.99589 5.08714 5.12461 5.15437 5.19012 5.22574 5.34864 5.57624 5.68595 6.11866 6.51086 6.80409 7.11971 8.71197 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.004537 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.026676 B = 6169.531982 C = 6458.180738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.128 4.128 3 C -0.032 4.032 4 C -0.144 4.144 5 C 0.496 3.504 6 O -0.534 6.534 7 O -0.341 6.341 8 C 0.233 3.767 9 H 0.032 0.968 10 C -0.532 4.532 11 H 0.050 0.950 12 C 0.035 3.965 13 N -0.929 5.929 14 Si 0.933 3.067 15 H -0.253 1.253 16 H -0.283 1.283 17 H -0.254 1.254 18 C -0.199 4.199 19 C -0.153 4.153 20 C -0.188 4.188 21 C -0.042 4.042 22 C -0.153 4.153 23 C 0.126 3.874 24 F -0.129 7.129 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.275 0.725 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.674 -9.876 6.635 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.129 4.129 3 C -0.051 4.051 4 C -0.145 4.145 5 C 0.343 3.657 6 O -0.427 6.427 7 O -0.257 6.257 8 C 0.179 3.821 9 H 0.050 0.950 10 C -0.570 4.570 11 H 0.068 0.932 12 C -0.165 4.165 13 N -0.567 5.567 14 Si 0.758 3.242 15 H -0.178 1.178 16 H -0.210 1.210 17 H -0.178 1.178 18 C -0.218 4.218 19 C -0.190 4.190 20 C -0.225 4.225 21 C -0.060 4.060 22 C -0.171 4.171 23 C 0.106 3.894 24 F -0.108 7.108 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.166 0.834 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.665 -9.513 6.566 20.281 hybrid contribution 0.485 0.837 -0.140 0.977 sum -16.180 -8.676 6.426 19.451 Atomic orbital electron populations 1.20826 0.87385 1.04525 1.04161 1.20067 0.98858 0.90518 1.03484 1.21094 0.91274 0.98976 0.93724 1.19279 0.93952 0.90555 1.10741 1.21638 0.81926 0.90032 0.72106 1.90728 1.70062 1.34359 1.47537 1.86545 1.19455 1.37336 1.82334 1.20066 0.90982 0.78914 0.92153 0.95018 1.20864 1.01752 0.97749 1.36612 0.93206 1.25472 0.94225 1.02055 0.94756 1.69953 1.11524 1.32252 1.42972 0.86073 0.80049 0.78947 0.79141 1.17812 1.20954 1.17820 1.23178 1.00352 1.04904 0.93334 1.22898 1.02540 0.94469 0.99054 1.23298 0.94867 1.01514 1.02835 1.21449 1.01567 0.90182 0.92799 1.21329 0.92010 1.00268 1.03499 1.17934 0.90210 0.81130 1.00110 1.91510 1.80063 1.45873 1.93328 0.89285 0.89589 0.90243 0.83283 0.91583 0.88260 0.88814 0.86980 0.87222 0.88828 0.83358 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.83 71.24 0.70 -0.86 16 2 C -0.13 -2.58 5.88 -19.86 -0.12 -2.69 16 3 C -0.03 -0.80 9.24 22.53 0.21 -0.59 16 4 C -0.14 -4.32 5.87 -20.10 -0.12 -4.44 16 5 C 0.50 19.41 6.84 70.29 0.48 19.89 16 6 O -0.53 -22.78 13.44 19.86 0.27 -22.52 16 7 O -0.34 -15.22 7.63 -56.39 -0.43 -15.65 16 8 C 0.23 11.67 2.00 29.85 0.06 11.73 16 9 H 0.03 1.71 6.21 -2.39 -0.01 1.70 16 10 C -0.53 -30.93 9.48 25.60 0.24 -30.69 16 11 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 12 C 0.03 2.01 5.44 84.65 0.46 2.47 16 13 N -0.93 -56.50 13.96 21.45 0.30 -56.20 16 14 Si 0.93 44.12 24.48 68.60 1.68 45.80 16 15 H -0.25 -11.07 6.72 99.48 0.67 -10.40 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.25 -11.86 6.53 99.48 0.65 -11.21 16 18 C -0.20 -8.77 4.45 -10.79 -0.05 -8.82 16 19 C -0.15 -5.49 9.80 30.62 0.30 -5.19 16 20 C -0.19 -6.90 9.85 30.62 0.30 -6.59 16 21 C -0.04 -1.07 9.61 22.52 0.22 -0.85 16 22 C -0.15 -3.08 10.01 22.27 0.22 -2.86 16 23 C 0.13 2.54 7.25 22.47 0.16 2.70 16 24 F -0.13 -2.49 16.46 44.97 0.74 -1.75 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.08 1.00 7.63 -2.39 -0.02 0.98 16 28 H 0.15 3.54 7.65 -2.91 -0.02 3.52 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.10 4.53 4.40 -2.39 -0.01 4.52 16 31 H 0.09 3.33 6.91 -2.38 -0.02 3.32 16 32 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.09 3.61 5.36 -2.38 -0.01 3.59 16 35 H 0.15 3.89 7.61 -2.91 -0.02 3.87 16 36 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -67.03 304.58 6.64 -60.39 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 1.01 Total: 16.73 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.07 Total: -26.81 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.30 Total: -56.20 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.16 Total: -38.16 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.74 Total: -1.75 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.68 Total: 45.80 kcal Total: -67.03 6.64 -60.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548821.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.807 kcal (2) G-P(sol) polarization free energy of solvation -67.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds