Wall clock time and date at job start Tue Mar 31 2020 00:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37832 * 119.94377 * 2 1 4 4 C 1.39687 * 119.87905 * 179.97438 * 3 2 1 5 5 C 1.47595 * 120.12554 * 179.97438 * 4 3 2 6 6 O 1.21487 * 119.99957 * 0.02562 * 5 4 3 7 7 O 1.34731 * 119.99883 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99882 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.46922 * 29.99470 * 8 7 5 10 10 C 1.50696 * 109.47200 * 149.99777 * 8 7 5 11 11 H 1.07996 * 120.00002 * 359.97438 * 10 8 7 12 12 C 1.37875 * 120.00124 * 179.97438 * 10 8 7 13 13 N 1.31522 * 119.99981 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 120.00216 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46832 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46944 * 119.99798 * 14 12 10 17 17 H 1.48502 * 109.46976 * 239.99867 * 14 12 10 18 18 C 1.52997 * 109.46700 * 269.99573 * 8 7 5 19 19 C 1.53005 * 117.49771 * 128.74681 * 18 8 7 20 20 C 1.52999 * 117.50258 * 60.08713 * 18 8 7 21 21 C 1.39725 * 119.75028 * 0.02562 * 4 3 2 22 22 C 1.37797 * 119.87438 * 359.97025 * 21 4 3 23 23 C 1.38645 * 119.93408 * 179.97438 * 2 1 3 24 24 F 1.35104 * 119.87602 * 359.72453 * 23 2 1 25 25 H 1.09000 * 109.47137 * 270.02425 * 1 2 3 26 26 H 1.09004 * 109.46531 * 30.01705 * 1 2 3 27 27 H 1.08994 * 109.47368 * 150.01701 * 1 2 3 28 28 H 1.08000 * 120.06141 * 359.97438 * 3 2 1 29 29 H 0.96991 * 119.99700 * 180.02562 * 13 12 10 30 30 H 1.09006 * 115.55065 * 274.41392 * 18 8 7 31 31 H 1.08995 * 117.49931 * 0.02562 * 19 18 8 32 32 H 1.09008 * 117.49681 * 145.01750 * 19 18 8 33 33 H 1.08994 * 117.50627 * 214.97836 * 20 18 8 34 34 H 1.09001 * 117.49773 * 0.02562 * 20 18 8 35 35 H 1.07996 * 120.06375 * 179.97438 * 21 4 3 36 36 H 1.08001 * 119.93663 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1943 0.0000 4 6 3.5919 1.1928 0.0005 5 6 4.3341 2.4685 0.0000 6 8 3.7301 3.5226 -0.0005 7 8 5.6814 2.4640 0.0000 8 6 6.3449 3.7556 0.0000 9 1 5.7192 4.4854 0.5137 10 6 7.6689 3.6402 0.7104 11 1 7.9803 2.6912 1.1212 12 6 8.4826 4.7461 0.8359 13 7 8.1035 5.9017 0.3352 14 14 10.1235 4.6032 1.7172 15 1 10.3139 3.2070 2.1854 16 1 11.2199 4.9668 0.7839 17 1 10.1407 5.5226 2.8833 18 6 6.5780 4.2091 -1.4425 19 6 6.1100 5.6145 -1.8256 20 6 5.3477 4.3884 -2.3343 21 6 4.2838 -0.0211 0.0005 22 6 3.5857 -1.2091 0.0006 23 6 2.1989 -1.2015 0.0005 24 9 1.5195 -2.3693 0.0067 25 1 -0.3633 0.0004 1.0277 26 1 -0.3632 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6551 2.1297 -0.0004 29 1 8.6761 6.6795 0.4232 30 1 7.4892 3.8369 -1.9110 31 1 5.6365 6.2162 -1.0498 32 1 6.7132 6.1668 -2.5463 33 1 5.4495 4.1346 -3.3894 34 1 4.3722 4.1838 -1.8932 35 1 5.3638 -0.0282 0.0005 36 1 4.1196 -2.1480 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345548822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:35 Heat of formation + Delta-G solvation = -89.084638 kcal Electronic energy + Delta-G solvation = -21160.752416 eV Core-core repulsion = 17718.092107 eV Total energy + Delta-G solvation = -3442.660309 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.09075 -40.02307 -38.59552 -36.33465 -34.93361 -33.09396 -32.65267 -30.89113 -27.98313 -27.07123 -24.31085 -22.96427 -22.28518 -21.26118 -20.38762 -19.21685 -17.71235 -17.41998 -16.83770 -16.05306 -15.89376 -15.82063 -15.23981 -14.65549 -14.39556 -13.92952 -13.58120 -13.48566 -13.34145 -13.27399 -12.82795 -12.54193 -12.12363 -11.90682 -11.59312 -11.36829 -11.08156 -11.06948 -10.95377 -10.44384 -10.29794 -9.85222 -9.81126 -9.41092 -9.08333 -9.04794 -8.73798 -8.67040 -8.45102 -6.17423 -4.25507 0.64760 1.12336 2.84469 3.22860 3.29626 3.33061 3.50721 3.79111 4.05549 4.32120 4.54305 4.61666 4.95515 5.06332 5.11919 5.15376 5.26614 5.41081 5.50053 5.66808 5.83178 5.91742 5.95224 6.04798 6.11402 6.14894 6.28375 6.40794 6.54787 6.64740 6.71764 6.99026 7.14244 7.23118 7.36542 7.59354 7.82121 8.07037 8.56097 8.85252 9.39255 10.89369 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025532 B = 0.004384 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.406998 B = 6385.422141 C = 7057.428656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C -0.034 4.034 4 C -0.118 4.118 5 C 0.499 3.501 6 O -0.513 6.513 7 O -0.345 6.345 8 C 0.249 3.751 9 H 0.050 0.950 10 C -0.528 4.528 11 H 0.070 0.930 12 C 0.069 3.931 13 N -0.872 5.872 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.229 4.229 21 C -0.039 4.039 22 C -0.163 4.163 23 C 0.118 3.882 24 F -0.137 7.137 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.264 0.736 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 -10.981 -1.923 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.136 4.136 3 C -0.052 4.052 4 C -0.119 4.119 5 C 0.343 3.657 6 O -0.404 6.404 7 O -0.261 6.261 8 C 0.197 3.803 9 H 0.067 0.933 10 C -0.566 4.566 11 H 0.088 0.912 12 C -0.135 4.135 13 N -0.508 5.508 14 Si 0.733 3.267 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.135 4.135 19 C -0.160 4.160 20 C -0.266 4.266 21 C -0.057 4.057 22 C -0.182 4.182 23 C 0.099 3.901 24 F -0.115 7.115 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.164 0.836 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.170 0.830 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.638 -10.486 -1.944 15.063 hybrid contribution 0.914 0.003 0.323 0.969 sum -9.724 -10.482 -1.620 14.390 Atomic orbital electron populations 1.20711 0.89700 1.03444 1.02945 1.19809 0.97275 0.91421 1.05093 1.21058 0.92397 0.97949 0.93845 1.19491 0.93286 0.92346 1.06825 1.20842 0.83188 0.88328 0.73328 1.90750 1.70196 1.33137 1.46352 1.86535 1.17531 1.40533 1.81516 1.20267 0.91779 0.76680 0.91586 0.93268 1.20931 1.01674 0.96932 1.37040 0.91198 1.24876 0.98446 0.94843 0.95323 1.70057 1.37175 0.99972 1.43604 0.86308 0.82756 0.78369 0.79219 1.19520 1.20804 1.20815 1.22605 0.95203 0.99783 0.95878 1.22367 1.01576 0.90584 1.01475 1.23283 0.98118 1.06722 0.98509 1.21455 1.01575 0.90083 0.92579 1.21117 0.91909 1.00022 1.05164 1.17816 0.90065 0.80862 1.01397 1.91481 1.80208 1.46236 1.93590 0.90719 0.90678 0.91172 0.83600 0.92652 0.89272 0.89308 0.90763 0.91007 0.88860 0.82999 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.83 36.01 0.35 -0.65 16 2 C -0.14 -1.61 5.88 -104.62 -0.62 -2.22 16 3 C -0.03 -0.47 9.24 -39.19 -0.36 -0.84 16 4 C -0.12 -1.90 5.87 -104.98 -0.62 -2.52 16 5 C 0.50 10.23 7.11 34.55 0.25 10.47 16 6 O -0.51 -11.56 13.43 -19.26 -0.26 -11.81 16 7 O -0.35 -7.90 9.09 -40.58 -0.37 -8.27 16 8 C 0.25 6.42 2.25 -27.89 -0.06 6.36 16 9 H 0.05 1.41 6.92 -51.93 -0.36 1.05 16 10 C -0.53 -14.34 8.88 -34.44 -0.31 -14.64 16 11 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 12 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 13 N -0.87 -23.82 11.43 55.43 0.63 -23.19 16 14 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 15 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.12 -2.80 4.47 -90.62 -0.41 -3.20 16 19 C -0.12 -2.80 9.04 -26.69 -0.24 -3.05 16 20 C -0.23 -4.91 9.80 -26.69 -0.26 -5.17 16 21 C -0.04 -0.53 9.61 -39.19 -0.38 -0.91 16 22 C -0.16 -1.91 10.01 -39.58 -0.40 -2.31 16 23 C 0.12 1.42 7.25 -39.27 -0.28 1.13 16 24 F -0.14 -1.59 16.46 2.25 0.04 -1.56 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.07 0.59 7.63 -51.93 -0.40 0.19 16 28 H 0.15 1.94 7.65 -52.49 -0.40 1.54 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.09 2.21 8.11 -51.93 -0.42 1.79 16 31 H 0.09 2.16 8.05 -51.93 -0.42 1.75 16 32 H 0.07 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 2.06 5.37 -51.93 -0.28 1.78 16 35 H 0.15 2.05 7.61 -52.49 -0.40 1.65 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -28.82 313.84 -8.00 -36.82 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.33 Total: 3.48 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.42 Total: -15.79 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.63 Total: -23.19 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.63 Total: -20.08 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.82 -8.00 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.263 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds