Wall clock time and date at job start Tue Mar 31 2020 00:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37832 * 119.94377 * 2 1 4 4 C 1.39687 * 119.87905 * 179.97438 * 3 2 1 5 5 C 1.47595 * 120.12554 * 179.97438 * 4 3 2 6 6 O 1.21487 * 119.99957 * 0.02562 * 5 4 3 7 7 O 1.34731 * 119.99883 * 180.02562 * 5 4 3 8 8 C 1.45202 * 116.99882 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.46922 * 29.99470 * 8 7 5 10 10 C 1.50696 * 109.47200 * 149.99777 * 8 7 5 11 11 H 1.07996 * 120.00002 * 359.97438 * 10 8 7 12 12 C 1.37875 * 120.00124 * 179.97438 * 10 8 7 13 13 N 1.31522 * 119.99981 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 120.00216 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46832 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.46944 * 119.99798 * 14 12 10 17 17 H 1.48502 * 109.46976 * 239.99867 * 14 12 10 18 18 C 1.52997 * 109.46700 * 269.99573 * 8 7 5 19 19 C 1.53005 * 117.49771 * 128.74681 * 18 8 7 20 20 C 1.52999 * 117.50258 * 60.08713 * 18 8 7 21 21 C 1.39725 * 119.75028 * 0.02562 * 4 3 2 22 22 C 1.37797 * 119.87438 * 359.97025 * 21 4 3 23 23 C 1.38645 * 119.93408 * 179.97438 * 2 1 3 24 24 F 1.35104 * 119.87602 * 359.72453 * 23 2 1 25 25 H 1.09000 * 109.47137 * 270.02425 * 1 2 3 26 26 H 1.09004 * 109.46531 * 30.01705 * 1 2 3 27 27 H 1.08994 * 109.47368 * 150.01701 * 1 2 3 28 28 H 1.08000 * 120.06141 * 359.97438 * 3 2 1 29 29 H 0.96991 * 119.99700 * 180.02562 * 13 12 10 30 30 H 1.09006 * 115.55065 * 274.41392 * 18 8 7 31 31 H 1.08995 * 117.49931 * 0.02562 * 19 18 8 32 32 H 1.09008 * 117.49681 * 145.01750 * 19 18 8 33 33 H 1.08994 * 117.50627 * 214.97836 * 20 18 8 34 34 H 1.09001 * 117.49773 * 0.02562 * 20 18 8 35 35 H 1.07996 * 120.06375 * 179.97438 * 21 4 3 36 36 H 1.08001 * 119.93663 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1943 0.0000 4 6 3.5919 1.1928 0.0005 5 6 4.3341 2.4685 0.0000 6 8 3.7301 3.5226 -0.0005 7 8 5.6814 2.4640 0.0000 8 6 6.3449 3.7556 0.0000 9 1 5.7192 4.4854 0.5137 10 6 7.6689 3.6402 0.7104 11 1 7.9803 2.6912 1.1212 12 6 8.4826 4.7461 0.8359 13 7 8.1035 5.9017 0.3352 14 14 10.1235 4.6032 1.7172 15 1 10.3139 3.2070 2.1854 16 1 11.2199 4.9668 0.7839 17 1 10.1407 5.5226 2.8833 18 6 6.5780 4.2091 -1.4425 19 6 6.1100 5.6145 -1.8256 20 6 5.3477 4.3884 -2.3343 21 6 4.2838 -0.0211 0.0005 22 6 3.5857 -1.2091 0.0006 23 6 2.1989 -1.2015 0.0005 24 9 1.5195 -2.3693 0.0067 25 1 -0.3633 0.0004 1.0277 26 1 -0.3632 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6551 2.1297 -0.0004 29 1 8.6761 6.6795 0.4232 30 1 7.4892 3.8369 -1.9110 31 1 5.6365 6.2162 -1.0498 32 1 6.7132 6.1668 -2.5463 33 1 5.4495 4.1346 -3.3894 34 1 4.3722 4.1838 -1.8932 35 1 5.3638 -0.0282 0.0005 36 1 4.1196 -2.1480 0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345548822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:33 Heat of formation + Delta-G solvation = -102.358417 kcal Electronic energy + Delta-G solvation = -21161.328010 eV Core-core repulsion = 17718.092107 eV Total energy + Delta-G solvation = -3443.235903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -50.04901 -41.56053 -39.87355 -38.11612 -36.72198 -34.71331 -34.03145 -32.04329 -29.88751 -28.01926 -25.87270 -24.68550 -23.31986 -23.07591 -21.91930 -21.03555 -19.11947 -18.66673 -18.47510 -17.61708 -17.20190 -17.09631 -16.75458 -16.50896 -15.71853 -15.43058 -14.89423 -14.62013 -14.50182 -14.31694 -14.24456 -13.93517 -13.42554 -13.31814 -13.02037 -12.90714 -12.88540 -12.78007 -12.26480 -12.18244 -12.06972 -11.76509 -11.53562 -11.27828 -10.94800 -10.60479 -10.44368 -10.09564 -9.78592 -8.21243 -6.38068 -0.51271 0.12086 1.43233 1.43758 1.47288 1.56426 1.90853 2.42795 2.55579 3.05167 3.06596 3.21491 3.58588 3.69886 3.81786 4.05910 4.09336 4.13978 4.30380 4.43701 4.49855 4.66109 4.74642 4.76341 4.79304 4.80701 5.01548 5.11322 5.13474 5.16198 5.23636 5.25280 5.38881 5.48367 5.55483 5.70882 5.83125 6.10945 6.64293 6.94619 7.31456 8.85345 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025532 B = 0.004384 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.406998 B = 6385.422141 C = 7057.428656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.129 4.129 3 C -0.036 4.036 4 C -0.143 4.143 5 C 0.495 3.505 6 O -0.542 6.542 7 O -0.352 6.352 8 C 0.254 3.746 9 H 0.009 0.991 10 C -0.555 4.555 11 H 0.065 0.935 12 C 0.027 3.973 13 N -0.895 5.895 14 Si 0.974 3.026 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.278 1.278 18 C -0.133 4.133 19 C -0.122 4.122 20 C -0.201 4.201 21 C -0.041 4.041 22 C -0.151 4.151 23 C 0.124 3.876 24 F -0.129 7.129 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.267 0.733 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.952 -12.856 -2.287 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.130 4.130 3 C -0.054 4.054 4 C -0.144 4.144 5 C 0.342 3.658 6 O -0.435 6.435 7 O -0.268 6.268 8 C 0.201 3.799 9 H 0.027 0.973 10 C -0.592 4.592 11 H 0.084 0.916 12 C -0.176 4.176 13 N -0.531 5.531 14 Si 0.798 3.202 15 H -0.190 1.190 16 H -0.200 1.200 17 H -0.204 1.204 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.238 4.238 21 C -0.059 4.059 22 C -0.170 4.170 23 C 0.105 3.895 24 F -0.108 7.108 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.099 0.901 28 H 0.163 0.837 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.169 0.831 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.057 -12.379 -2.313 16.759 hybrid contribution 0.913 0.505 0.453 1.138 sum -10.144 -11.874 -1.860 15.727 Atomic orbital electron populations 1.20819 0.87439 1.04535 1.04073 1.20054 0.98829 0.90534 1.03551 1.21079 0.91421 0.98900 0.94011 1.19337 0.93943 0.90779 1.10327 1.21631 0.82247 0.89865 0.72096 1.90721 1.70258 1.34677 1.47852 1.86516 1.19217 1.38961 1.82145 1.19906 0.90790 0.77003 0.92167 0.97342 1.21198 1.02658 0.97194 1.38175 0.91639 1.25697 1.01770 0.94324 0.95764 1.70167 1.38336 1.00490 1.44064 0.85271 0.78352 0.78494 0.78081 1.18974 1.19957 1.20411 1.22433 0.96235 1.00937 0.95576 1.22287 1.01984 0.90316 1.01292 1.23269 0.96472 1.04512 0.99518 1.21455 1.01642 0.90039 0.92793 1.21334 0.91936 1.00254 1.03451 1.17916 0.90255 0.81055 1.00314 1.91508 1.80070 1.45817 1.93366 0.89466 0.89662 0.90078 0.83685 0.92394 0.90029 0.91621 0.89220 0.87884 0.89696 0.83150 0.81043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 9.83 71.24 0.70 -1.02 16 2 C -0.13 -2.78 5.88 -19.86 -0.12 -2.90 16 3 C -0.04 -0.97 9.24 22.52 0.21 -0.76 16 4 C -0.14 -4.60 5.87 -20.10 -0.12 -4.72 16 5 C 0.49 21.07 7.11 70.29 0.50 21.57 16 6 O -0.54 -25.59 13.43 19.88 0.27 -25.32 16 7 O -0.35 -16.78 9.09 -56.41 -0.51 -17.30 16 8 C 0.25 13.69 2.25 29.85 0.07 13.76 16 9 H 0.01 0.54 6.92 -2.39 -0.02 0.52 16 10 C -0.55 -31.04 8.88 25.60 0.23 -30.81 16 11 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 12 C 0.03 1.44 5.30 84.65 0.45 1.89 16 13 N -0.89 -49.81 11.43 21.45 0.25 -49.57 16 14 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 15 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 C -0.13 -6.58 4.47 -10.79 -0.05 -6.63 16 19 C -0.12 -5.65 9.04 30.62 0.28 -5.37 16 20 C -0.20 -8.58 9.80 30.62 0.30 -8.28 16 21 C -0.04 -1.10 9.61 22.52 0.22 -0.88 16 22 C -0.15 -3.16 10.01 22.27 0.22 -2.93 16 23 C 0.12 2.63 7.25 22.47 0.16 2.79 16 24 F -0.13 -2.56 16.46 44.97 0.74 -1.82 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 27 H 0.08 1.09 7.63 -2.39 -0.02 1.07 16 28 H 0.15 3.87 7.65 -2.91 -0.02 3.85 16 29 H 0.27 13.99 8.31 -92.72 -0.77 13.22 16 30 H 0.08 4.13 8.11 -2.38 -0.02 4.11 16 31 H 0.07 3.34 8.05 -2.39 -0.02 3.32 16 32 H 0.09 3.83 8.14 -2.38 -0.02 3.81 16 33 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 34 H 0.08 3.81 5.37 -2.39 -0.01 3.80 16 35 H 0.15 4.02 7.61 -2.91 -0.02 4.00 16 36 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -63.54 313.84 6.91 -56.63 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.10 Total: 17.22 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 3.05 Total: -24.30 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.25 Total: -49.57 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.25 Total: -42.62 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.74 Total: -1.82 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -63.54 6.91 -56.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345548822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.725 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds