Wall clock time and date at job start Mon Mar 30 2020 23:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00139 * 2 1 4 4 H 1.48502 * 109.47469 * 269.99569 * 3 2 1 5 5 H 1.48497 * 109.47072 * 30.00168 * 3 2 1 6 6 H 1.48507 * 109.47229 * 150.00007 * 3 2 1 7 7 C 1.37887 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99758 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99962 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.46840 * 59.99508 * 9 7 2 11 11 O 1.45196 * 109.47288 * 179.97438 * 9 7 2 12 12 C 1.34705 * 117.00279 * 209.99684 * 11 9 7 13 13 O 1.21473 * 120.00102 * 0.02562 * 12 11 9 14 14 C 1.47732 * 119.99951 * 179.72548 * 12 11 9 15 15 C 1.39629 * 120.14721 * 0.02562 * 14 12 11 16 16 C 1.37946 * 119.84232 * 179.69841 * 15 14 12 17 17 C 1.38363 * 120.15233 * 0.57092 * 16 15 14 18 18 C 1.50695 * 119.85225 * 179.69859 * 17 16 15 19 19 F 1.39896 * 109.47237 * 270.02652 * 18 17 16 20 20 C 1.38371 * 120.30126 * 359.72706 * 17 16 15 21 21 C 1.37949 * 120.15267 * 359.97311 * 20 17 16 22 22 C 1.52998 * 109.46932 * 299.99847 * 9 7 2 23 23 C 1.53000 * 117.49917 * 248.74282 * 22 9 7 24 24 C 1.52997 * 117.49746 * 180.08589 * 22 9 7 25 25 H 0.96998 * 119.99368 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.07596 * 359.97438 * 15 14 12 27 27 H 1.07997 * 119.92168 * 180.29586 * 16 15 14 28 28 H 1.09003 * 109.46950 * 30.02821 * 18 17 16 29 29 H 1.08997 * 109.47308 * 150.02445 * 18 17 16 30 30 H 1.08003 * 119.92466 * 179.97438 * 20 17 16 31 31 H 1.07998 * 120.07755 * 180.02562 * 21 20 17 32 32 H 1.09007 * 115.55097 * 34.42098 * 22 9 7 33 33 H 1.09000 * 117.49703 * 0.02562 * 23 22 9 34 34 H 1.08998 * 117.49792 * 145.01743 * 23 22 9 35 35 H 1.09006 * 117.49892 * 214.97904 * 24 22 9 36 36 H 1.09001 * 117.50419 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8905 11 8 3.9955 -2.5632 -0.0001 12 6 5.1791 -2.7934 0.6004 13 8 5.7901 -1.8758 1.1106 14 6 5.7310 -4.1631 0.6442 15 6 5.0286 -5.2211 0.0638 16 6 5.5528 -6.4965 0.1029 17 6 6.7659 -6.7305 0.7258 18 6 7.3290 -8.1276 0.7705 19 9 6.8757 -8.7764 1.9240 20 6 7.4642 -5.6876 1.3084 21 6 6.9547 -4.4063 1.2712 22 6 4.0220 -0.4722 -1.2485 23 6 4.7217 -1.3159 -2.3160 24 6 5.5370 -0.3671 -1.4339 25 1 -0.4849 0.8401 -0.0004 26 1 4.0793 -5.0405 -0.4186 27 1 5.0129 -7.3149 -0.3498 28 1 7.0006 -8.6800 -0.1100 29 1 8.4178 -8.0803 0.7844 30 1 8.4104 -5.8773 1.7934 31 1 7.5009 -3.5931 1.7260 32 1 3.4140 0.3663 -1.5883 33 1 4.8180 -2.3854 -2.1289 34 1 4.5743 -1.0323 -3.3581 35 1 5.9258 0.5404 -1.8961 36 1 6.1702 -0.8119 -0.6662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975929.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:43 Heat of formation + Delta-G solvation = -82.336578 kcal Electronic energy + Delta-G solvation = -21155.041304 eV Core-core repulsion = 17712.673613 eV Total energy + Delta-G solvation = -3442.367691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.89337 -40.29118 -38.92119 -36.76364 -35.04407 -32.82722 -32.55006 -31.17588 -28.87317 -27.13841 -23.48076 -22.80246 -22.54769 -21.78483 -20.84599 -19.53332 -17.84885 -16.78126 -16.74106 -16.32727 -16.10874 -16.01231 -15.90232 -14.98615 -14.52092 -14.50042 -13.89607 -13.60877 -13.51292 -13.20177 -12.76475 -12.58318 -12.08237 -11.78383 -11.56470 -11.45403 -11.28609 -11.10724 -10.97988 -10.79511 -10.24852 -10.13692 -9.90019 -9.66467 -9.37130 -9.14097 -9.11930 -8.85173 -8.70844 -6.26166 -4.28868 0.60564 1.22916 2.77741 3.15599 3.27352 3.32659 3.35283 3.74585 4.17952 4.24415 4.39497 4.50132 4.59602 4.81586 4.83614 5.02063 5.14986 5.24679 5.33166 5.41545 5.50887 5.63773 5.64747 5.69257 5.84078 6.04489 6.16510 6.21202 6.24653 6.34392 6.46082 6.67914 6.69878 6.73640 6.81591 7.22972 7.44052 8.15189 8.49587 8.80336 9.30367 10.85474 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.004258 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.843144 B = 6574.274843 C = 6914.381361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.082 3.918 3 Si 0.872 3.128 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.521 4.521 8 H 0.089 0.911 9 C 0.226 3.774 10 H 0.053 0.947 11 O -0.331 6.331 12 C 0.495 3.505 13 O -0.511 6.511 14 C -0.103 4.103 15 C -0.062 4.062 16 C -0.111 4.111 17 C -0.115 4.115 18 C 0.105 3.895 19 F -0.210 7.210 20 C -0.112 4.112 21 C -0.062 4.062 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.207 4.207 25 H 0.270 0.730 26 H 0.147 0.853 27 H 0.133 0.867 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.926 -12.478 -1.425 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.122 4.122 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.558 4.558 8 H 0.107 0.893 9 C 0.172 3.828 10 H 0.071 0.929 11 O -0.247 6.247 12 C 0.340 3.660 13 O -0.402 6.402 14 C -0.105 4.105 15 C -0.081 4.081 16 C -0.129 4.129 17 C -0.115 4.115 18 C 0.051 3.949 19 F -0.191 7.191 20 C -0.130 4.130 21 C -0.080 4.080 22 C -0.183 4.183 23 C -0.207 4.207 24 C -0.244 4.244 25 H 0.080 0.920 26 H 0.165 0.835 27 H 0.150 0.850 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.863 -12.078 -1.260 19.193 hybrid contribution 0.280 1.170 -0.084 1.206 sum 15.143 -10.909 -1.343 18.711 Atomic orbital electron populations 1.69836 1.06016 1.27476 1.48915 1.24706 0.94783 0.98590 0.94090 0.87065 0.80812 0.83581 0.78552 1.19983 1.21433 1.18007 1.20693 0.86613 0.95751 1.52769 0.89335 1.20512 0.94966 0.74277 0.93019 0.92929 1.86566 1.33310 1.36062 1.68734 1.21104 0.80691 0.88615 0.75636 1.90750 1.60175 1.45486 1.43831 1.19472 0.96428 0.91648 1.02914 1.21632 0.99578 0.91447 0.95394 1.21053 0.95003 0.97222 0.99638 1.20454 0.96148 0.95545 0.99374 1.20837 0.99539 0.88927 0.85627 1.92823 1.91239 1.82495 1.52576 1.20952 1.00377 0.91891 0.99806 1.21291 0.93769 0.97336 0.95610 1.23428 0.92928 1.02062 0.99843 1.22756 1.04711 0.97602 0.95637 1.23262 0.95669 1.01597 1.03827 0.92010 0.83547 0.84953 0.89623 0.89727 0.85045 0.84226 0.87340 0.88937 0.89592 0.89886 0.88077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 2 C 0.08 2.32 5.44 -17.82 -0.10 2.22 16 3 Si 0.87 21.33 24.48 -169.99 -4.16 17.17 16 4 H -0.27 -6.42 6.72 56.52 0.38 -6.04 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 7 C -0.52 -14.67 9.48 -34.44 -0.33 -15.00 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 C 0.23 5.60 2.00 -27.88 -0.06 5.54 16 10 H 0.05 1.39 6.22 -51.93 -0.32 1.07 16 11 O -0.33 -7.34 7.63 -40.51 -0.31 -7.65 16 12 C 0.50 9.79 6.85 34.61 0.24 10.03 16 13 O -0.51 -11.03 13.44 -19.25 -0.26 -11.29 16 14 C -0.10 -1.62 5.87 -104.98 -0.62 -2.23 16 15 C -0.06 -0.85 9.62 -39.17 -0.38 -1.22 16 16 C -0.11 -1.20 9.68 -39.64 -0.38 -1.59 16 17 C -0.11 -1.15 5.60 -104.53 -0.59 -1.74 16 18 C 0.11 0.78 7.67 36.00 0.28 1.06 16 19 F -0.21 -2.21 17.34 2.25 0.04 -2.17 16 20 C -0.11 -1.18 9.68 -39.64 -0.38 -1.56 16 21 C -0.06 -0.81 9.60 -39.17 -0.38 -1.19 16 22 C -0.16 -3.71 4.45 -90.62 -0.40 -4.12 16 23 C -0.17 -3.25 9.80 -26.70 -0.26 -3.51 16 24 C -0.21 -4.05 9.85 -26.70 -0.26 -4.31 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.15 2.01 7.61 -52.49 -0.40 1.61 16 27 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.09 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 31 H 0.14 1.78 7.65 -52.49 -0.40 1.38 16 32 H 0.11 2.56 4.39 -51.93 -0.23 2.33 16 33 H 0.09 1.73 6.91 -51.93 -0.36 1.37 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.10 2.04 5.36 -51.93 -0.28 1.77 16 LS Contribution 305.88 15.07 4.61 4.61 Total: -1.00 -31.56 305.88 -7.05 -38.62 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -4.13 Total: 3.88 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -3.62 Total: -17.61 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.77 Total: -25.55 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.57 Total: -18.94 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.16 Total: 17.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.56 -7.05 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975929.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.720 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds