Wall clock time and date at job start Mon Mar 30 2020 23:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00139 * 2 1 4 4 H 1.48502 * 109.47469 * 269.99569 * 3 2 1 5 5 H 1.48497 * 109.47072 * 30.00168 * 3 2 1 6 6 H 1.48507 * 109.47229 * 150.00007 * 3 2 1 7 7 C 1.37887 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99758 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99962 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.46840 * 59.99508 * 9 7 2 11 11 O 1.45196 * 109.47288 * 179.97438 * 9 7 2 12 12 C 1.34705 * 117.00279 * 209.99684 * 11 9 7 13 13 O 1.21473 * 120.00102 * 0.02562 * 12 11 9 14 14 C 1.47732 * 119.99951 * 179.72548 * 12 11 9 15 15 C 1.39629 * 120.14721 * 0.02562 * 14 12 11 16 16 C 1.37946 * 119.84232 * 179.69841 * 15 14 12 17 17 C 1.38363 * 120.15233 * 0.57092 * 16 15 14 18 18 C 1.50695 * 119.85225 * 179.69859 * 17 16 15 19 19 F 1.39896 * 109.47237 * 270.02652 * 18 17 16 20 20 C 1.38371 * 120.30126 * 359.72706 * 17 16 15 21 21 C 1.37949 * 120.15267 * 359.97311 * 20 17 16 22 22 C 1.52998 * 109.46932 * 299.99847 * 9 7 2 23 23 C 1.53000 * 117.49917 * 248.74282 * 22 9 7 24 24 C 1.52997 * 117.49746 * 180.08589 * 22 9 7 25 25 H 0.96998 * 119.99368 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.07596 * 359.97438 * 15 14 12 27 27 H 1.07997 * 119.92168 * 180.29586 * 16 15 14 28 28 H 1.09003 * 109.46950 * 30.02821 * 18 17 16 29 29 H 1.08997 * 109.47308 * 150.02445 * 18 17 16 30 30 H 1.08003 * 119.92466 * 179.97438 * 20 17 16 31 31 H 1.07998 * 120.07755 * 180.02562 * 21 20 17 32 32 H 1.09007 * 115.55097 * 34.42098 * 22 9 7 33 33 H 1.09000 * 117.49703 * 0.02562 * 23 22 9 34 34 H 1.08998 * 117.49792 * 145.01743 * 23 22 9 35 35 H 1.09006 * 117.49892 * 214.97904 * 24 22 9 36 36 H 1.09001 * 117.50419 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8745 -0.6809 0.8905 11 8 3.9955 -2.5632 -0.0001 12 6 5.1791 -2.7934 0.6004 13 8 5.7901 -1.8758 1.1106 14 6 5.7310 -4.1631 0.6442 15 6 5.0286 -5.2211 0.0638 16 6 5.5528 -6.4965 0.1029 17 6 6.7659 -6.7305 0.7258 18 6 7.3290 -8.1276 0.7705 19 9 6.8757 -8.7764 1.9240 20 6 7.4642 -5.6876 1.3084 21 6 6.9547 -4.4063 1.2712 22 6 4.0220 -0.4722 -1.2485 23 6 4.7217 -1.3159 -2.3160 24 6 5.5370 -0.3671 -1.4339 25 1 -0.4849 0.8401 -0.0004 26 1 4.0793 -5.0405 -0.4186 27 1 5.0129 -7.3149 -0.3498 28 1 7.0006 -8.6800 -0.1100 29 1 8.4178 -8.0803 0.7844 30 1 8.4104 -5.8773 1.7934 31 1 7.5009 -3.5931 1.7260 32 1 3.4140 0.3663 -1.5883 33 1 4.8180 -2.3854 -2.1289 34 1 4.5743 -1.0323 -3.3581 35 1 5.9258 0.5404 -1.8961 36 1 6.1702 -0.8119 -0.6662 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345975929.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:43 Heat of formation + Delta-G solvation = -100.141533 kcal Electronic energy + Delta-G solvation = -21155.813385 eV Core-core repulsion = 17712.673613 eV Total energy + Delta-G solvation = -3443.139771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.57564 -41.79777 -40.05504 -38.37730 -36.71073 -34.94022 -33.55854 -32.12260 -30.80084 -28.09916 -25.15392 -24.03753 -23.75168 -23.31060 -22.19891 -21.14897 -19.39888 -18.62189 -18.04649 -17.86340 -17.23863 -16.91488 -16.75490 -16.59251 -15.65850 -15.54909 -15.42886 -15.01459 -14.82827 -14.50989 -14.30435 -13.83274 -13.68501 -13.44541 -13.36704 -12.73521 -12.47605 -12.34129 -12.16483 -12.14821 -11.93329 -11.82246 -11.57553 -11.50613 -11.07698 -10.81456 -10.69500 -10.12511 -10.07022 -8.46551 -6.54956 -0.47257 0.30023 1.20747 1.29165 1.41055 1.44878 1.79233 2.18818 2.65396 2.80454 2.94744 3.41521 3.66112 3.73102 3.84550 3.90757 3.97548 4.06785 4.11700 4.14197 4.33575 4.42067 4.52231 4.64923 4.68600 4.77194 4.82982 4.95562 4.96685 5.06501 5.14181 5.19671 5.26373 5.31963 5.36449 5.56344 5.76110 6.09723 6.48233 6.78879 7.09453 8.69069 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030203 B = 0.004258 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.843144 B = 6574.274843 C = 6914.381361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.035 3.965 3 Si 0.935 3.065 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.256 1.256 7 C -0.534 4.534 8 H 0.048 0.952 9 C 0.233 3.767 10 H 0.030 0.970 11 O -0.342 6.342 12 C 0.492 3.508 13 O -0.536 6.536 14 C -0.134 4.134 15 C -0.074 4.074 16 C -0.107 4.107 17 C -0.104 4.104 18 C 0.102 3.898 19 F -0.227 7.227 20 C -0.104 4.104 21 C -0.067 4.067 22 C -0.199 4.199 23 C -0.152 4.152 24 C -0.188 4.188 25 H 0.275 0.725 26 H 0.134 0.866 27 H 0.161 0.839 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.167 0.833 31 H 0.138 0.862 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.832 -13.658 -2.369 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.165 4.165 3 Si 0.759 3.241 4 H -0.176 1.176 5 H -0.208 1.208 6 H -0.180 1.180 7 C -0.572 4.572 8 H 0.066 0.934 9 C 0.178 3.822 10 H 0.048 0.952 11 O -0.258 6.258 12 C 0.339 3.661 13 O -0.429 6.429 14 C -0.135 4.135 15 C -0.092 4.092 16 C -0.125 4.125 17 C -0.105 4.105 18 C 0.048 3.952 19 F -0.209 7.209 20 C -0.122 4.122 21 C -0.085 4.085 22 C -0.217 4.217 23 C -0.189 4.189 24 C -0.225 4.225 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.178 0.822 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.184 0.816 31 H 0.156 0.844 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.781 -13.282 -2.211 22.304 hybrid contribution -0.600 1.327 0.258 1.479 sum 17.181 -11.954 -1.953 21.022 Atomic orbital electron populations 1.69956 1.07695 1.28804 1.50172 1.25492 0.95508 1.02171 0.93366 0.86052 0.79305 0.78987 0.79742 1.17630 1.20801 1.17984 1.20864 0.88838 0.94499 1.52975 0.93367 1.20063 0.92798 0.75752 0.93549 0.95227 1.86547 1.35023 1.34586 1.69620 1.21876 0.79490 0.90310 0.74451 1.90713 1.60524 1.46724 1.44939 1.19378 0.98203 0.89581 1.06307 1.21621 0.99340 0.92410 0.95813 1.21369 0.95450 0.96520 0.99134 1.20890 0.95250 0.97136 0.97199 1.21139 1.01277 0.86985 0.85793 1.92795 1.91604 1.82662 1.53806 1.21341 1.01414 0.90538 0.98869 1.21398 0.92874 0.98809 0.95463 1.23166 0.95069 1.03149 1.00321 1.22886 1.02287 0.97430 0.96275 1.23293 0.93125 1.02690 1.03387 0.91523 0.84785 0.82155 0.86957 0.86656 0.81590 0.84418 0.88166 0.89006 0.86823 0.87074 0.88999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.96 21.45 0.30 -56.79 16 2 C 0.03 2.03 5.44 84.66 0.46 2.49 16 3 Si 0.93 44.75 24.48 68.60 1.68 46.43 16 4 H -0.25 -11.08 6.72 99.48 0.67 -10.41 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.26 -12.15 6.53 99.48 0.65 -11.50 16 7 C -0.53 -31.72 9.48 25.60 0.24 -31.47 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.12 16 9 C 0.23 11.97 2.00 29.85 0.06 12.03 16 10 H 0.03 1.65 6.22 -2.38 -0.01 1.63 16 11 O -0.34 -15.89 7.63 -56.15 -0.43 -16.32 16 12 C 0.49 20.18 6.85 70.33 0.48 20.66 16 13 O -0.54 -23.90 13.44 19.92 0.27 -23.63 16 14 C -0.13 -4.22 5.87 -20.10 -0.12 -4.34 16 15 C -0.07 -1.99 9.62 22.54 0.22 -1.77 16 16 C -0.11 -2.07 9.68 22.23 0.22 -1.85 16 17 C -0.10 -1.72 5.60 -19.80 -0.11 -1.84 16 18 C 0.10 1.04 7.67 71.23 0.55 1.59 16 19 F -0.23 -3.98 17.34 44.97 0.78 -3.20 16 20 C -0.10 -1.85 9.68 22.23 0.22 -1.64 16 21 C -0.07 -1.70 9.60 22.54 0.22 -1.48 16 22 C -0.20 -8.93 4.45 -10.80 -0.05 -8.98 16 23 C -0.15 -5.59 9.80 30.62 0.30 -5.29 16 24 C -0.19 -7.06 9.85 30.62 0.30 -6.75 16 25 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.13 3.86 7.61 -2.91 -0.02 3.83 16 27 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 28 H 0.11 0.62 8.08 -2.39 -0.02 0.60 16 29 H 0.12 0.55 8.08 -2.39 -0.02 0.53 16 30 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.14 3.46 7.65 -2.91 -0.02 3.43 16 32 H 0.10 4.65 4.39 -2.38 -0.01 4.64 16 33 H 0.09 3.37 6.91 -2.39 -0.02 3.36 16 34 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 36 H 0.09 3.65 5.36 -2.39 -0.01 3.64 16 Total: -1.00 -72.45 305.88 6.58 -65.86 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.01 Total: 16.30 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 2.98 Total: -28.65 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.30 Total: -56.79 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.16 Total: -39.95 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.20 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.68 Total: 46.43 kcal Total: -72.45 6.58 -65.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975929.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.280 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds