Wall clock time and date at job start Mon Mar 30 2020 23:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47289 * 240.00414 * 3 2 1 5 5 H 1.48503 * 109.47106 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46985 * 120.00293 * 3 2 1 7 7 C 1.37875 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00051 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47497 * 299.99957 * 9 7 2 11 11 O 1.45200 * 109.47062 * 179.97438 * 9 7 2 12 12 C 1.34710 * 117.00020 * 150.00010 * 11 9 7 13 13 O 1.21472 * 120.00097 * 0.02562 * 12 11 9 14 14 C 1.47725 * 120.00207 * 179.97438 * 12 11 9 15 15 C 1.39626 * 120.15283 * 179.97438 * 14 12 11 16 16 C 1.37946 * 119.85107 * 180.02562 * 15 14 12 17 17 C 1.38373 * 120.14545 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.84333 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.46746 * 90.00262 * 18 17 16 20 20 C 1.38365 * 120.30397 * 0.23284 * 17 16 15 21 21 C 1.37940 * 120.14935 * 359.48863 * 20 17 16 22 22 C 1.53004 * 109.47205 * 60.00043 * 9 7 2 23 23 C 1.53001 * 117.49504 * 248.74343 * 22 9 7 24 24 C 1.53001 * 117.49626 * 180.08654 * 22 9 7 25 25 H 0.96992 * 120.00288 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.07521 * 0.02562 * 15 14 12 27 27 H 1.07997 * 119.92555 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.46646 * 209.99557 * 18 17 16 29 29 H 1.09000 * 109.47248 * 330.00274 * 18 17 16 30 30 H 1.08005 * 119.91996 * 179.72467 * 20 17 16 31 31 H 1.08003 * 120.07440 * 180.25577 * 21 20 17 32 32 H 1.08997 * 115.55085 * 34.41997 * 22 9 7 33 33 H 1.08992 * 117.49947 * 0.02562 * 23 22 9 34 34 H 1.09000 * 117.49181 * 145.02055 * 23 22 9 35 35 H 1.08997 * 117.49723 * 214.97391 * 24 22 9 36 36 H 1.08999 * 117.50036 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 2.1946 -3.6028 -0.0018 12 6 1.8025 -4.7433 0.5982 13 8 0.7022 -4.8142 1.1080 14 6 2.7100 -5.9084 0.6351 15 6 2.3069 -7.0920 1.2566 16 6 3.1596 -8.1759 1.2879 17 6 4.4121 -8.0918 0.7057 18 6 5.3384 -9.2800 0.7444 19 9 5.1230 -10.0761 -0.3856 20 6 4.8199 -6.9202 0.0929 21 6 3.9751 -5.8307 0.0494 22 6 0.3709 -2.5799 -1.2495 23 6 -1.1447 -2.5124 -1.0512 24 6 -0.4807 -3.8377 -1.4334 25 1 -0.4850 0.8399 0.0004 26 1 1.3298 -7.1587 1.7117 27 1 2.8489 -9.0921 1.7679 28 1 6.3721 -8.9345 0.7537 29 1 5.1424 -9.8644 1.6434 30 1 5.8006 -6.8600 -0.3557 31 1 4.2931 -4.9182 -0.4329 32 1 0.7825 -2.1154 -2.1455 33 1 -1.5147 -2.4101 -0.0311 34 1 -1.7302 -2.0037 -1.8170 35 1 -0.6297 -4.2002 -2.4504 36 1 -0.4136 -4.6077 -0.6649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345975930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:46 Heat of formation + Delta-G solvation = -91.281076 kcal Electronic energy + Delta-G solvation = -20971.113494 eV Core-core repulsion = 17528.357941 eV Total energy + Delta-G solvation = -3442.755553 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.85808 -40.02411 -38.69230 -36.35218 -34.91575 -32.69268 -32.46706 -31.09723 -28.13736 -26.91186 -23.59681 -22.72586 -22.50383 -21.24964 -20.46225 -19.24843 -17.75074 -16.69887 -16.60049 -16.14258 -16.03684 -15.81001 -15.25537 -14.72464 -14.45418 -14.44595 -13.87268 -13.54089 -13.44006 -12.99081 -12.60559 -12.36030 -11.65759 -11.50062 -11.37041 -11.23160 -11.06497 -11.03377 -10.93967 -10.44200 -10.30279 -9.85698 -9.78883 -9.39611 -9.06701 -9.04064 -9.02373 -8.66850 -8.43996 -6.16388 -4.24773 0.70743 1.30303 2.93563 3.25995 3.29663 3.30823 3.53180 3.87464 4.23470 4.33472 4.44627 4.63439 4.88407 4.90154 5.01433 5.14965 5.31704 5.36975 5.38411 5.56100 5.74401 5.91205 5.95200 6.14103 6.19847 6.28608 6.34298 6.45433 6.56488 6.67161 6.76476 6.99871 7.15298 7.24159 7.37589 7.59758 7.82942 8.08004 8.57431 8.85547 9.39783 10.90333 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.004109 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.151053 B = 6812.040356 C = 7446.169505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.070 3.930 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.250 3.750 10 H 0.049 0.951 11 O -0.345 6.345 12 C 0.496 3.504 13 O -0.513 6.513 14 C -0.100 4.100 15 C -0.063 4.063 16 C -0.112 4.112 17 C -0.118 4.118 18 C 0.106 3.894 19 F -0.211 7.211 20 C -0.112 4.112 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.230 4.230 25 H 0.265 0.735 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 -14.557 1.213 16.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.197 3.803 10 H 0.067 0.933 11 O -0.261 6.261 12 C 0.340 3.660 13 O -0.404 6.404 14 C -0.101 4.101 15 C -0.082 4.082 16 C -0.130 4.130 17 C -0.118 4.118 18 C 0.051 3.949 19 F -0.192 7.192 20 C -0.130 4.130 21 C -0.082 4.082 22 C -0.135 4.135 23 C -0.160 4.160 24 C -0.267 4.267 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.149 0.851 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.586 -14.399 1.316 16.328 hybrid contribution 0.150 1.024 -0.140 1.045 sum 7.736 -13.374 1.177 15.495 Atomic orbital electron populations 1.70036 1.05755 1.27155 1.47881 1.24873 0.95031 0.99051 0.94508 0.86411 0.79371 0.81948 0.78824 1.20002 1.21100 1.20048 1.20854 0.93780 0.88327 1.53758 0.91322 1.20254 0.86094 0.80223 0.93695 0.93305 1.86534 1.49133 1.21726 1.68712 1.20985 0.85229 0.83989 0.75790 1.90743 1.22023 1.83610 1.44030 1.19558 0.94957 0.93305 1.02288 1.21303 1.00010 0.91037 0.95814 1.20945 0.93141 0.98696 1.00257 1.20428 0.95924 0.95710 0.99761 1.20836 0.99080 0.88796 0.86173 1.92819 1.96481 1.75375 1.54547 1.21035 1.00259 0.92374 0.99353 1.21610 0.92049 0.99108 0.95424 1.22604 0.92944 0.97463 1.00448 1.22363 0.95487 0.96700 1.01419 1.23284 1.09467 0.93013 1.00897 0.92533 0.84245 0.85134 0.89685 0.89756 0.85098 0.83668 0.89278 0.89318 0.90754 0.90999 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.02 11.43 55.43 0.63 -23.39 16 2 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.53 8.88 -34.44 -0.31 -14.83 16 8 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.25 6.53 2.25 -27.88 -0.06 6.47 16 10 H 0.05 1.42 6.92 -51.93 -0.36 1.06 16 11 O -0.35 -8.07 9.10 -40.52 -0.37 -8.44 16 12 C 0.50 10.43 7.12 34.61 0.25 10.68 16 13 O -0.51 -11.82 13.44 -19.24 -0.26 -12.08 16 14 C -0.10 -1.65 5.87 -104.98 -0.62 -2.27 16 15 C -0.06 -0.89 9.60 -39.17 -0.38 -1.26 16 16 C -0.11 -1.25 9.68 -39.64 -0.38 -1.63 16 17 C -0.12 -1.24 5.60 -104.52 -0.59 -1.83 16 18 C 0.11 0.83 7.67 36.01 0.28 1.11 16 19 F -0.21 -2.28 17.34 2.25 0.04 -2.24 16 20 C -0.11 -1.27 9.68 -39.64 -0.38 -1.66 16 21 C -0.06 -0.91 9.62 -39.17 -0.38 -1.28 16 22 C -0.12 -2.84 4.47 -90.62 -0.41 -3.24 16 23 C -0.12 -2.84 9.04 -26.69 -0.24 -3.08 16 24 C -0.23 -5.02 9.80 -26.69 -0.26 -5.28 16 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.14 1.91 7.65 -52.49 -0.40 1.51 16 27 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 31 H 0.15 2.06 7.61 -52.48 -0.40 1.66 16 32 H 0.09 2.24 8.11 -51.93 -0.42 1.82 16 33 H 0.09 2.19 8.05 -51.93 -0.42 1.77 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 2.11 5.36 -51.93 -0.28 1.83 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -30.15 315.13 -8.15 -38.30 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.35 Total: 3.72 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -3.57 Total: -16.33 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.63 Total: -23.39 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.63 Total: -20.52 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.15 -8.15 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.981 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds