Wall clock time and date at job start Mon Mar 30 2020 23:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47289 * 240.00414 * 3 2 1 5 5 H 1.48503 * 109.47106 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46985 * 120.00293 * 3 2 1 7 7 C 1.37875 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00203 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00051 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47497 * 299.99957 * 9 7 2 11 11 O 1.45200 * 109.47062 * 179.97438 * 9 7 2 12 12 C 1.34710 * 117.00020 * 150.00010 * 11 9 7 13 13 O 1.21472 * 120.00097 * 0.02562 * 12 11 9 14 14 C 1.47725 * 120.00207 * 179.97438 * 12 11 9 15 15 C 1.39626 * 120.15283 * 179.97438 * 14 12 11 16 16 C 1.37946 * 119.85107 * 180.02562 * 15 14 12 17 17 C 1.38373 * 120.14545 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.84333 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.46746 * 90.00262 * 18 17 16 20 20 C 1.38365 * 120.30397 * 0.23284 * 17 16 15 21 21 C 1.37940 * 120.14935 * 359.48863 * 20 17 16 22 22 C 1.53004 * 109.47205 * 60.00043 * 9 7 2 23 23 C 1.53001 * 117.49504 * 248.74343 * 22 9 7 24 24 C 1.53001 * 117.49626 * 180.08654 * 22 9 7 25 25 H 0.96992 * 120.00288 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.07521 * 0.02562 * 15 14 12 27 27 H 1.07997 * 119.92555 * 180.02562 * 16 15 14 28 28 H 1.09000 * 109.46646 * 209.99557 * 18 17 16 29 29 H 1.09000 * 109.47248 * 330.00274 * 18 17 16 30 30 H 1.08005 * 119.91996 * 179.72467 * 20 17 16 31 31 H 1.08003 * 120.07440 * 180.25577 * 21 20 17 32 32 H 1.08997 * 115.55085 * 34.41997 * 22 9 7 33 33 H 1.08992 * 117.49947 * 0.02562 * 23 22 9 34 34 H 1.09000 * 117.49181 * 145.02055 * 23 22 9 35 35 H 1.08997 * 117.49723 * 214.97391 * 24 22 9 36 36 H 1.08999 * 117.50036 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 8 2.1946 -3.6028 -0.0018 12 6 1.8025 -4.7433 0.5982 13 8 0.7022 -4.8142 1.1080 14 6 2.7100 -5.9084 0.6351 15 6 2.3069 -7.0920 1.2566 16 6 3.1596 -8.1759 1.2879 17 6 4.4121 -8.0918 0.7057 18 6 5.3384 -9.2800 0.7444 19 9 5.1230 -10.0761 -0.3856 20 6 4.8199 -6.9202 0.0929 21 6 3.9751 -5.8307 0.0494 22 6 0.3709 -2.5799 -1.2495 23 6 -1.1447 -2.5124 -1.0512 24 6 -0.4807 -3.8377 -1.4334 25 1 -0.4850 0.8399 0.0004 26 1 1.3298 -7.1587 1.7117 27 1 2.8489 -9.0921 1.7679 28 1 6.3721 -8.9345 0.7537 29 1 5.1424 -9.8644 1.6434 30 1 5.8006 -6.8600 -0.3557 31 1 4.2931 -4.9182 -0.4329 32 1 0.7825 -2.1154 -2.1455 33 1 -1.5147 -2.4101 -0.0311 34 1 -1.7302 -2.0037 -1.8170 35 1 -0.6297 -4.2002 -2.4504 36 1 -0.4136 -4.6077 -0.6649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345975930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:45 Heat of formation + Delta-G solvation = -106.220649 kcal Electronic energy + Delta-G solvation = -20971.761322 eV Core-core repulsion = 17528.357941 eV Total energy + Delta-G solvation = -3443.403382 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.56141 -41.57058 -39.94286 -38.16821 -36.74715 -34.72984 -33.51629 -32.09757 -30.01314 -27.99874 -25.41971 -23.88107 -23.72011 -23.10473 -21.87907 -21.10851 -19.34342 -18.44441 -17.98460 -17.18799 -17.07373 -16.89070 -16.73519 -16.51469 -15.80425 -15.52675 -15.37464 -14.88956 -14.62705 -14.48134 -14.05774 -13.64605 -13.49734 -13.24765 -12.99194 -12.78318 -12.31274 -12.30602 -12.18887 -12.09887 -11.83808 -11.79336 -11.51432 -11.29102 -10.96989 -10.63714 -10.46436 -10.09382 -10.05073 -8.22554 -6.40170 -0.42898 0.31942 1.42191 1.45346 1.52421 1.53752 1.91333 2.41920 2.69214 3.04694 3.18614 3.45694 3.70143 3.85698 3.92770 4.06575 4.15011 4.16037 4.27160 4.35533 4.40702 4.53190 4.62339 4.68690 4.76919 4.84651 4.98552 5.08274 5.16273 5.21799 5.30823 5.36078 5.38020 5.45742 5.52989 5.78448 5.80760 6.08770 6.61731 6.92673 7.29318 8.83751 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025940 B = 0.004109 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.151053 B = 6812.040356 C = 7446.169505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.558 4.558 8 H 0.065 0.935 9 C 0.255 3.745 10 H 0.007 0.993 11 O -0.354 6.354 12 C 0.490 3.510 13 O -0.544 6.544 14 C -0.132 4.132 15 C -0.071 4.071 16 C -0.104 4.104 17 C -0.106 4.106 18 C 0.103 3.897 19 F -0.227 7.227 20 C -0.106 4.106 21 C -0.073 4.073 22 C -0.133 4.133 23 C -0.119 4.119 24 C -0.203 4.203 25 H 0.268 0.732 26 H 0.134 0.866 27 H 0.166 0.834 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.163 0.837 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.066 -16.191 0.840 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.596 4.596 8 H 0.083 0.917 9 C 0.202 3.798 10 H 0.025 0.975 11 O -0.270 6.270 12 C 0.337 3.663 13 O -0.437 6.437 14 C -0.133 4.133 15 C -0.089 4.089 16 C -0.122 4.122 17 C -0.107 4.107 18 C 0.049 3.951 19 F -0.208 7.208 20 C -0.124 4.124 21 C -0.091 4.091 22 C -0.152 4.152 23 C -0.157 4.157 24 C -0.240 4.240 25 H 0.077 0.923 26 H 0.152 0.848 27 H 0.183 0.817 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.181 0.819 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.564 -16.057 0.943 18.713 hybrid contribution -0.415 1.398 0.032 1.458 sum 9.149 -14.659 0.975 17.307 Atomic orbital electron populations 1.70153 1.07048 1.28100 1.47738 1.25723 0.95953 1.02297 0.93614 0.85351 0.78182 0.77440 0.79091 1.19093 1.20332 1.19593 1.21137 0.93836 0.89563 1.55018 0.91690 1.19900 0.86163 0.81089 0.92693 0.97487 1.86517 1.48648 1.22243 1.69560 1.21868 0.85728 0.84183 0.74497 1.90706 1.23611 1.84021 1.45376 1.19430 0.95523 0.92395 1.05992 1.21383 1.00575 0.91118 0.95824 1.21324 0.92742 0.98672 0.99452 1.20890 0.95932 0.96432 0.97412 1.21126 0.99708 0.87694 0.86545 1.92795 1.96613 1.75708 1.55683 1.21380 1.00911 0.91470 0.98595 1.21626 0.91719 1.00130 0.95643 1.22433 0.93412 0.99871 0.99439 1.22282 0.94713 0.97988 1.00679 1.23266 1.06730 0.91786 1.02188 0.92319 0.84833 0.81700 0.86895 0.86802 0.81913 0.84562 0.90037 0.91622 0.89075 0.87889 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.47 11.43 21.45 0.25 -50.22 16 2 C 0.03 1.45 5.30 84.65 0.45 1.90 16 3 Si 0.98 42.84 29.54 68.60 2.03 44.87 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.56 -31.82 8.88 25.60 0.23 -31.59 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.25 14.06 2.25 29.85 0.07 14.13 16 10 H 0.01 0.46 6.92 -2.39 -0.02 0.44 16 11 O -0.35 -17.51 9.10 -56.20 -0.51 -18.02 16 12 C 0.49 21.84 7.12 70.33 0.50 22.34 16 13 O -0.54 -26.75 13.44 19.93 0.27 -26.49 16 14 C -0.13 -4.48 5.87 -20.10 -0.12 -4.60 16 15 C -0.07 -1.95 9.60 22.54 0.22 -1.74 16 16 C -0.10 -2.03 9.68 22.23 0.22 -1.81 16 17 C -0.11 -1.86 5.60 -19.80 -0.11 -1.97 16 18 C 0.10 1.12 7.67 71.24 0.55 1.67 16 19 F -0.23 -4.00 17.34 44.97 0.78 -3.22 16 20 C -0.11 -2.12 9.68 22.23 0.22 -1.90 16 21 C -0.07 -2.06 9.62 22.54 0.22 -1.84 16 22 C -0.13 -6.74 4.47 -10.79 -0.05 -6.79 16 23 C -0.12 -5.67 9.04 30.62 0.28 -5.40 16 24 C -0.20 -8.97 9.80 30.62 0.30 -8.67 16 25 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 26 H 0.13 3.75 7.65 -2.91 -0.02 3.73 16 27 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.11 0.67 8.08 -2.39 -0.02 0.65 16 29 H 0.11 0.64 8.08 -2.39 -0.02 0.62 16 30 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.14 3.98 7.61 -2.91 -0.02 3.96 16 32 H 0.08 4.22 8.11 -2.39 -0.02 4.20 16 33 H 0.07 3.40 8.05 -2.39 -0.02 3.39 16 34 H 0.09 3.97 8.14 -2.39 -0.02 3.95 16 35 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 36 H 0.08 3.88 5.36 -2.39 -0.01 3.87 16 Total: -1.00 -68.83 315.13 6.85 -61.98 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 1.09 Total: 17.38 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 2.95 Total: -26.27 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.25 Total: -50.22 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.24 Total: -44.51 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -68.83 6.85 -61.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345975930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.239 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds