Wall clock time and date at job start Mon Mar 30 2020 23:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00070 * 2 1 4 4 H 1.48494 * 109.47366 * 240.00394 * 3 2 1 5 5 H 1.48506 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46997 * 120.00247 * 3 2 1 7 7 C 1.37872 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99738 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47676 * 60.00400 * 9 7 2 11 11 O 1.45206 * 109.47268 * 179.97438 * 9 7 2 12 12 C 1.34222 * 117.00281 * 210.00176 * 11 9 7 13 13 O 1.20827 * 120.00270 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99956 * 180.02562 * 12 11 9 15 15 C 1.50706 * 109.47001 * 179.97438 * 14 12 11 16 16 C 1.38244 * 119.97491 * 269.72488 * 15 14 12 17 17 C 1.38201 * 120.02142 * 179.72306 * 16 15 14 18 18 C 1.38459 * 119.97601 * 0.57371 * 17 16 15 19 19 F 1.35094 * 120.02797 * 179.67746 * 18 17 16 20 20 C 1.38461 * 119.94519 * 359.70287 * 18 17 16 21 21 C 1.38193 * 119.98059 * 359.97438 * 20 18 17 22 22 C 1.53002 * 109.47334 * 299.99889 * 9 7 2 23 23 C 1.53008 * 117.49873 * 248.75147 * 22 9 7 24 24 C 1.53000 * 117.50137 * 180.09013 * 22 9 7 25 25 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46978 * 60.00290 * 14 12 11 27 27 H 1.09000 * 109.46976 * 299.99535 * 14 12 11 28 28 H 1.08000 * 119.98716 * 359.97438 * 16 15 14 29 29 H 1.07996 * 120.01399 * 180.25476 * 17 16 15 30 30 H 1.08009 * 120.01051 * 179.97438 * 20 18 17 31 31 H 1.07999 * 119.99486 * 179.97438 * 21 20 18 32 32 H 1.08996 * 115.54981 * 34.41335 * 22 9 7 33 33 H 1.08998 * 117.49698 * 359.97438 * 23 22 9 34 34 H 1.08995 * 117.49396 * 145.01915 * 23 22 9 35 35 H 1.08992 * 117.49775 * 214.97968 * 24 22 9 36 36 H 1.09005 * 117.49775 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 2.1945 -3.6028 -0.0018 12 6 1.8028 -4.7387 -0.5999 13 8 0.7076 -4.8088 -1.1055 14 6 2.7286 -5.9272 -0.6401 15 6 2.0542 -7.0651 -1.3623 16 6 1.2953 -7.9789 -0.6550 17 6 0.6718 -9.0195 -1.3171 18 6 0.8171 -9.1534 -2.6875 19 9 0.2133 -10.1740 -3.3348 20 6 1.5821 -8.2408 -3.3939 21 6 2.1993 -7.1972 -2.7308 22 6 0.3718 -2.5804 1.2490 23 6 0.7539 -3.6085 2.3159 24 6 -0.4766 -3.8400 1.4352 25 1 -0.4850 0.8401 0.0004 26 1 2.9691 -6.2349 0.3775 27 1 3.6452 -5.6562 -1.1641 28 1 1.1864 -7.8773 0.4146 29 1 0.0756 -9.7310 -0.7651 30 1 1.6965 -8.3445 -4.4629 31 1 2.7964 -6.4854 -3.2815 32 1 -0.0498 -1.6348 1.5896 33 1 1.6313 -4.2271 2.1274 34 1 0.5831 -3.3392 3.3582 35 1 -1.4562 -3.7230 1.8985 36 1 -0.4087 -4.6106 0.6672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345978088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:53 Heat of formation + Delta-G solvation = -86.418832 kcal Electronic energy + Delta-G solvation = -21151.069106 eV Core-core repulsion = 17708.524396 eV Total energy + Delta-G solvation = -3442.544711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.94695 -40.06942 -38.88275 -36.49365 -34.72769 -32.84932 -32.59455 -31.20401 -28.35487 -27.09270 -23.45433 -23.13578 -22.14552 -21.47280 -20.41043 -18.97533 -17.73232 -17.01659 -16.74846 -16.53023 -15.90053 -15.63139 -15.48783 -15.14222 -14.49038 -14.07094 -14.02821 -13.63956 -13.46510 -12.97824 -12.54186 -12.18071 -11.95286 -11.83905 -11.48838 -11.37866 -11.12341 -11.05601 -10.96502 -10.57526 -10.33272 -10.11250 -9.74187 -9.51686 -9.16030 -9.14386 -8.62252 -8.55534 -8.46422 -6.21157 -4.28729 1.04333 1.18997 2.92588 3.24460 3.27320 3.29286 3.36712 3.86358 4.19694 4.32440 4.60455 4.62562 4.81868 4.90409 5.10955 5.12899 5.19286 5.49960 5.54721 5.63655 5.82515 5.83978 5.96019 6.04503 6.06557 6.11782 6.15623 6.42435 6.44234 6.65640 6.80782 6.88612 6.98248 7.16894 7.54349 7.57127 7.82212 8.09015 8.58413 8.84287 9.35977 10.85915 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029779 B = 0.004023 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.045649 B = 6958.251616 C = 7311.456227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.910 3.090 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.249 3.751 10 H 0.052 0.948 11 O -0.352 6.352 12 C 0.451 3.549 13 O -0.508 6.508 14 C -0.080 4.080 15 C -0.075 4.075 16 C -0.074 4.074 17 C -0.153 4.153 18 C 0.093 3.907 19 F -0.144 7.144 20 C -0.153 4.153 21 C -0.074 4.074 22 C -0.116 4.116 23 C -0.194 4.194 24 C -0.210 4.210 25 H 0.267 0.733 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 -14.627 -1.336 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.196 3.804 10 H 0.070 0.930 11 O -0.269 6.269 12 C 0.293 3.707 13 O -0.397 6.397 14 C -0.118 4.118 15 C -0.075 4.075 16 C -0.092 4.092 17 C -0.171 4.171 18 C 0.074 3.926 19 F -0.122 7.122 20 C -0.171 4.171 21 C -0.092 4.092 22 C -0.135 4.135 23 C -0.231 4.231 24 C -0.247 4.247 25 H 0.077 0.923 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.915 -14.497 -1.497 15.091 hybrid contribution -0.015 0.748 -0.047 0.749 sum 3.900 -13.749 -1.544 14.375 Atomic orbital electron populations 1.69971 1.05915 1.27459 1.48880 1.24900 0.95041 0.99281 0.94592 0.86366 0.79346 0.81726 0.78906 1.19956 1.21048 1.19904 1.20913 0.93920 0.88383 1.52573 0.91216 1.20135 0.85957 0.80290 0.93971 0.93020 1.86487 1.49291 1.22134 1.68962 1.23152 0.86683 0.85036 0.75812 1.90618 1.22426 1.83358 1.43321 1.20315 0.98247 0.89875 1.03320 1.19434 0.98662 0.95560 0.93875 1.20892 0.94904 0.93082 1.00368 1.21071 1.02701 1.00702 0.92659 1.17718 0.96738 0.87326 0.90815 1.91480 1.81620 1.57388 1.81748 1.21077 0.99615 0.95714 1.00730 1.20904 0.98283 0.96504 0.93517 1.23026 0.99249 0.93738 0.97460 1.22797 0.98491 1.05981 0.95852 1.23154 0.94459 1.03647 1.03469 0.92322 0.87173 0.87035 0.84950 0.84788 0.84771 0.84894 0.85316 0.89823 0.90445 0.90585 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 11.59 55.43 0.64 -24.00 16 2 C 0.06 1.74 5.20 -17.82 -0.09 1.64 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -14.14 8.90 -34.44 -0.31 -14.45 16 8 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 9 C 0.25 6.41 2.41 -27.88 -0.07 6.35 16 10 H 0.05 1.50 7.15 -51.93 -0.37 1.13 16 11 O -0.35 -7.83 8.39 -39.24 -0.33 -8.16 16 12 C 0.45 8.63 6.90 36.01 0.25 8.88 16 13 O -0.51 -11.20 13.08 -18.75 -0.25 -11.45 16 14 C -0.08 -1.05 5.94 -29.03 -0.17 -1.22 16 15 C -0.08 -0.97 4.37 -104.61 -0.46 -1.43 16 16 C -0.07 -0.90 9.70 -39.59 -0.38 -1.29 16 17 C -0.15 -1.79 10.03 -39.51 -0.40 -2.19 16 18 C 0.09 1.16 7.30 -39.42 -0.29 0.87 16 19 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 20 C -0.15 -1.80 10.03 -39.52 -0.40 -2.20 16 21 C -0.07 -0.90 9.70 -39.59 -0.38 -1.29 16 22 C -0.12 -2.82 5.27 -90.61 -0.48 -3.30 16 23 C -0.19 -3.96 9.80 -26.69 -0.26 -4.22 16 24 C -0.21 -4.50 9.85 -26.69 -0.26 -4.76 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.11 1.19 8.08 -51.93 -0.42 0.77 16 27 H 0.11 1.22 8.09 -51.93 -0.42 0.80 16 28 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.13 3.42 6.46 -51.93 -0.34 3.09 16 33 H 0.08 1.63 6.91 -51.93 -0.36 1.27 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.09 2.07 5.37 -51.93 -0.28 1.79 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -30.14 313.28 -8.16 -38.30 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.27 Total: 5.39 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -3.70 Total: -18.60 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.64 Total: -24.00 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.57 Total: -19.61 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.14 -8.16 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345978088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.118 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds