Wall clock time and date at job start Mon Mar 30 2020 23:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00070 * 2 1 4 4 H 1.48494 * 109.47366 * 240.00394 * 3 2 1 5 5 H 1.48506 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46997 * 120.00247 * 3 2 1 7 7 C 1.37872 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99738 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47676 * 60.00400 * 9 7 2 11 11 O 1.45206 * 109.47268 * 179.97438 * 9 7 2 12 12 C 1.34222 * 117.00281 * 210.00176 * 11 9 7 13 13 O 1.20827 * 120.00270 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99956 * 180.02562 * 12 11 9 15 15 C 1.50706 * 109.47001 * 179.97438 * 14 12 11 16 16 C 1.38244 * 119.97491 * 269.72488 * 15 14 12 17 17 C 1.38201 * 120.02142 * 179.72306 * 16 15 14 18 18 C 1.38459 * 119.97601 * 0.57371 * 17 16 15 19 19 F 1.35094 * 120.02797 * 179.67746 * 18 17 16 20 20 C 1.38461 * 119.94519 * 359.70287 * 18 17 16 21 21 C 1.38193 * 119.98059 * 359.97438 * 20 18 17 22 22 C 1.53002 * 109.47334 * 299.99889 * 9 7 2 23 23 C 1.53008 * 117.49873 * 248.75147 * 22 9 7 24 24 C 1.53000 * 117.50137 * 180.09013 * 22 9 7 25 25 H 0.97000 * 119.99817 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46978 * 60.00290 * 14 12 11 27 27 H 1.09000 * 109.46976 * 299.99535 * 14 12 11 28 28 H 1.08000 * 119.98716 * 359.97438 * 16 15 14 29 29 H 1.07996 * 120.01399 * 180.25476 * 17 16 15 30 30 H 1.08009 * 120.01051 * 179.97438 * 20 18 17 31 31 H 1.07999 * 119.99486 * 179.97438 * 21 20 18 32 32 H 1.08996 * 115.54981 * 34.41335 * 22 9 7 33 33 H 1.08998 * 117.49698 * 359.97438 * 23 22 9 34 34 H 1.08995 * 117.49396 * 145.01915 * 23 22 9 35 35 H 1.08992 * 117.49775 * 214.97968 * 24 22 9 36 36 H 1.09005 * 117.49775 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 2.1945 -3.6028 -0.0018 12 6 1.8028 -4.7387 -0.5999 13 8 0.7076 -4.8088 -1.1055 14 6 2.7286 -5.9272 -0.6401 15 6 2.0542 -7.0651 -1.3623 16 6 1.2953 -7.9789 -0.6550 17 6 0.6718 -9.0195 -1.3171 18 6 0.8171 -9.1534 -2.6875 19 9 0.2133 -10.1740 -3.3348 20 6 1.5821 -8.2408 -3.3939 21 6 2.1993 -7.1972 -2.7308 22 6 0.3718 -2.5804 1.2490 23 6 0.7539 -3.6085 2.3159 24 6 -0.4766 -3.8400 1.4352 25 1 -0.4850 0.8401 0.0004 26 1 2.9691 -6.2349 0.3775 27 1 3.6452 -5.6562 -1.1641 28 1 1.1864 -7.8773 0.4146 29 1 0.0756 -9.7310 -0.7651 30 1 1.6965 -8.3445 -4.4629 31 1 2.7964 -6.4854 -3.2815 32 1 -0.0498 -1.6348 1.5896 33 1 1.6313 -4.2271 2.1274 34 1 0.5831 -3.3392 3.3582 35 1 -1.4562 -3.7230 1.8985 36 1 -0.4087 -4.6106 0.6672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345978088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:53 Heat of formation + Delta-G solvation = -100.991830 kcal Electronic energy + Delta-G solvation = -21151.701039 eV Core-core repulsion = 17708.524396 eV Total energy + Delta-G solvation = -3443.176643 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.91182 -41.57523 -39.98294 -38.17746 -36.44393 -34.85492 -33.67730 -32.10167 -30.10597 -28.40247 -25.36657 -24.04120 -23.40274 -23.11975 -21.82452 -20.72318 -18.89090 -18.63502 -18.37994 -17.76973 -17.22289 -17.10924 -16.59343 -16.57905 -16.00297 -15.67370 -15.01409 -14.82160 -14.49176 -14.40456 -14.21640 -13.53630 -13.28415 -13.23620 -12.94060 -12.90584 -12.76776 -12.67473 -12.28970 -12.19385 -11.96471 -11.92716 -11.36075 -11.31810 -10.99775 -10.45347 -10.39854 -10.05560 -9.59559 -8.24834 -6.41217 0.07366 0.28870 1.41795 1.43880 1.46630 1.54339 2.04282 2.41601 2.74598 3.03829 3.18257 3.27308 3.59087 3.74603 3.96598 4.09760 4.11779 4.20824 4.29073 4.31256 4.32434 4.59765 4.61733 4.78779 4.89821 4.96652 5.00073 5.07371 5.14124 5.23463 5.27875 5.32470 5.50682 5.55276 5.59220 5.90697 5.96293 6.16967 6.64847 7.05460 7.30305 8.82092 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029779 B = 0.004023 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.045649 B = 6958.251616 C = 7311.456227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.257 3.743 10 H 0.004 0.996 11 O -0.358 6.358 12 C 0.445 3.555 13 O -0.541 6.541 14 C -0.067 4.067 15 C -0.091 4.091 16 C -0.080 4.080 17 C -0.156 4.156 18 C 0.079 3.921 19 F -0.148 7.148 20 C -0.158 4.158 21 C -0.083 4.083 22 C -0.150 4.150 23 C -0.163 4.163 24 C -0.201 4.201 25 H 0.268 0.732 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.773 -15.372 -0.444 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.203 3.797 10 H 0.022 0.978 11 O -0.275 6.275 12 C 0.290 3.710 13 O -0.432 6.432 14 C -0.104 4.104 15 C -0.091 4.091 16 C -0.098 4.098 17 C -0.175 4.175 18 C 0.060 3.940 19 F -0.127 7.127 20 C -0.176 4.176 21 C -0.101 4.101 22 C -0.169 4.169 23 C -0.200 4.200 24 C -0.238 4.238 25 H 0.077 0.923 26 H 0.159 0.841 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.164 0.836 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.257 -15.269 -0.605 16.160 hybrid contribution -0.469 0.891 -0.384 1.078 sum 4.788 -14.378 -0.989 15.187 Atomic orbital electron populations 1.70109 1.07462 1.28290 1.49328 1.25780 0.95828 1.02722 0.93810 0.85327 0.78133 0.77209 0.79319 1.19295 1.20619 1.18838 1.21246 0.94068 0.89712 1.53176 0.91295 1.19653 0.85933 0.81327 0.92749 0.97827 1.86470 1.48500 1.22606 1.69877 1.24362 0.87220 0.85193 0.74217 1.90604 1.24359 1.83732 1.44520 1.20439 0.97388 0.86882 1.05682 1.19556 0.99455 0.95789 0.94288 1.21152 0.94450 0.92881 1.01330 1.21327 1.02608 1.00987 0.92572 1.17967 0.97152 0.87542 0.91386 1.91468 1.81744 1.57574 1.81871 1.21313 0.99195 0.95381 1.01735 1.21151 0.98492 0.96851 0.93640 1.22725 1.01477 0.93873 0.98828 1.22890 0.98124 1.02983 0.95998 1.23125 0.95587 1.01472 1.03581 0.92280 0.84114 0.84456 0.83295 0.82928 0.83094 0.83646 0.88164 0.88545 0.88131 0.89284 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.33 11.59 21.45 0.25 -52.08 16 2 C 0.02 1.01 5.20 84.65 0.44 1.45 16 3 Si 0.98 42.31 29.54 68.60 2.03 44.34 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -30.19 8.90 25.60 0.23 -29.96 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.26 13.59 2.41 29.85 0.07 13.66 16 10 H 0.00 0.25 7.15 -2.39 -0.02 0.23 16 11 O -0.36 -15.86 8.39 -51.34 -0.43 -16.29 16 12 C 0.45 16.74 6.90 71.24 0.49 17.23 16 13 O -0.54 -24.13 13.08 21.96 0.29 -23.85 16 14 C -0.07 -1.59 5.94 29.10 0.17 -1.42 16 15 C -0.09 -2.17 4.37 -19.86 -0.09 -2.25 16 16 C -0.08 -1.78 9.70 22.26 0.22 -1.57 16 17 C -0.16 -3.42 10.03 22.31 0.22 -3.19 16 18 C 0.08 1.87 7.30 22.38 0.16 2.03 16 19 F -0.15 -3.62 17.27 44.97 0.78 -2.84 16 20 C -0.16 -3.52 10.03 22.31 0.22 -3.30 16 21 C -0.08 -1.92 9.70 22.26 0.22 -1.70 16 22 C -0.15 -7.39 5.27 -10.79 -0.06 -7.44 16 23 C -0.16 -6.36 9.80 30.62 0.30 -6.06 16 24 C -0.20 -8.48 9.85 30.62 0.30 -8.17 16 25 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.14 2.51 8.08 -2.39 -0.02 2.49 16 27 H 0.14 2.58 8.09 -2.39 -0.02 2.56 16 28 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 29 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 30 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.10 5.50 6.46 -2.39 -0.02 5.49 16 33 H 0.10 3.50 6.91 -2.39 -0.02 3.48 16 34 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.09 3.47 8.14 -2.39 -0.02 3.46 16 36 H 0.09 3.83 5.37 -2.38 -0.01 3.81 16 Total: -1.00 -67.10 313.28 6.91 -60.20 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 1.09 Total: 21.22 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 2.90 Total: -30.69 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.25 Total: -52.08 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.14 Total: -40.14 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.78 Total: -2.84 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -67.10 6.91 -60.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345978088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.797 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds