Wall clock time and date at job start Mon Mar 30 2020 23:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 11 11 O 1.45200 * 109.46946 * 180.02562 * 9 7 2 12 12 C 1.34232 * 117.00499 * 150.00202 * 11 9 7 13 13 O 1.20821 * 119.99528 * 359.97438 * 12 11 9 14 14 C 1.50695 * 120.00249 * 179.97438 * 12 11 9 15 15 C 1.50700 * 109.47295 * 179.97438 * 14 12 11 16 16 C 1.38243 * 119.97767 * 269.73077 * 15 14 12 17 17 C 1.38199 * 120.02212 * 179.72166 * 16 15 14 18 18 C 1.38459 * 119.97625 * 0.57496 * 17 16 15 19 19 F 1.35104 * 120.02638 * 179.68389 * 18 17 16 20 20 C 1.38460 * 119.94559 * 359.69931 * 18 17 16 21 21 C 1.38190 * 119.97642 * 359.97438 * 20 18 17 22 22 C 1.53001 * 109.47596 * 60.00274 * 9 7 2 23 23 C 1.52999 * 117.49512 * 248.74789 * 22 9 7 24 24 C 1.52992 * 117.50066 * 180.08681 * 22 9 7 25 25 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47521 * 300.00315 * 14 12 11 27 27 H 1.09008 * 109.47315 * 60.00296 * 14 12 11 28 28 H 1.07997 * 119.98551 * 359.97438 * 16 15 14 29 29 H 1.08003 * 120.00808 * 180.25260 * 17 16 15 30 30 H 1.08000 * 120.00952 * 179.97438 * 20 18 17 31 31 H 1.08002 * 119.98900 * 180.02562 * 21 20 18 32 32 H 1.08999 * 115.54378 * 34.40798 * 22 9 7 33 33 H 1.08994 * 117.50487 * 359.97438 * 23 22 9 34 34 H 1.09001 * 117.49791 * 145.02006 * 23 22 9 35 35 H 1.09000 * 117.50086 * 214.97634 * 24 22 9 36 36 H 1.09002 * 117.50188 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.6205 -2.5547 0.8933 11 8 2.1943 -3.6028 0.0130 12 6 1.8003 -4.7376 0.6122 13 8 0.7035 -4.8061 1.1144 14 6 2.7258 -5.9259 0.6584 15 6 2.0492 -7.0618 1.3815 16 6 2.1948 -7.1939 2.7499 17 6 1.5700 -8.2319 3.4148 18 6 0.8077 -9.1467 2.7082 19 9 0.2017 -10.1655 3.3563 20 6 0.6673 -9.0166 1.3369 21 6 1.2874 -7.9740 0.6751 22 6 0.3765 -2.5833 -1.2469 23 6 -1.1400 -2.5150 -1.0557 24 6 -0.4744 -3.8413 -1.4314 25 1 -0.4851 -0.8400 -0.0004 26 1 2.9704 -6.2358 -0.3576 27 1 3.6405 -5.6538 1.1854 28 1 2.7937 -6.4832 3.3000 29 1 1.6806 -8.3325 4.4844 30 1 0.0733 -9.7298 0.7847 31 1 1.1777 -7.8721 -0.3944 32 1 0.7922 -2.1210 -2.1422 33 1 -1.5148 -2.4107 -0.0376 34 1 -1.7220 -2.0084 -1.8256 35 1 -0.6188 -4.2066 -2.4481 36 1 -0.4110 -4.6093 -0.6605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345978089.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:55 Heat of formation + Delta-G solvation = -104.826077 kcal Electronic energy + Delta-G solvation = -21153.466978 eV Core-core repulsion = 17710.124070 eV Total energy + Delta-G solvation = -3443.342909 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.93682 -41.63395 -40.04168 -38.54349 -36.85788 -34.79768 -33.73175 -32.13698 -29.86218 -28.30181 -25.31029 -24.07686 -23.53219 -23.33933 -21.89019 -21.20859 -19.27832 -18.74164 -18.66956 -17.70977 -17.20216 -16.97093 -16.62238 -16.36682 -16.01189 -15.56882 -15.13475 -15.01080 -14.53184 -14.51739 -14.39623 -14.21336 -13.44260 -13.19665 -12.97352 -12.80826 -12.73375 -12.60002 -12.42159 -11.97175 -11.91576 -11.60257 -11.48800 -11.35735 -11.08456 -10.65442 -10.45176 -10.09036 -9.63328 -8.64707 -6.47003 0.03459 0.25414 1.32104 1.55525 1.63532 1.83430 1.93176 2.54971 2.66215 2.97722 3.11596 3.24041 3.54059 3.70933 3.86336 3.93203 3.96410 4.05134 4.15413 4.16305 4.27481 4.46788 4.55857 4.56704 4.62750 4.83107 4.93137 4.96779 5.01185 5.10851 5.14609 5.19938 5.26003 5.46787 5.58376 5.87162 5.95368 6.16651 6.52792 6.96294 7.36060 8.74726 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029823 B = 0.004016 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.651624 B = 6969.903845 C = 7358.371530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.014 4.014 3 Si 1.121 2.879 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.631 4.631 8 H 0.059 0.941 9 C 0.244 3.756 10 H -0.001 1.001 11 O -0.356 6.356 12 C 0.447 3.553 13 O -0.542 6.542 14 C -0.065 4.065 15 C -0.091 4.091 16 C -0.084 4.084 17 C -0.158 4.158 18 C 0.080 3.920 19 F -0.147 7.147 20 C -0.156 4.156 21 C -0.080 4.080 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.176 4.176 25 H 0.279 0.721 26 H 0.142 0.858 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -16.086 0.696 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.215 4.215 3 Si 0.942 3.058 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.669 4.669 8 H 0.077 0.923 9 C 0.190 3.810 10 H 0.016 0.984 11 O -0.272 6.272 12 C 0.292 3.708 13 O -0.433 6.433 14 C -0.102 4.102 15 C -0.092 4.092 16 C -0.102 4.102 17 C -0.176 4.176 18 C 0.061 3.939 19 F -0.126 7.126 20 C -0.174 4.174 21 C -0.098 4.098 22 C -0.179 4.179 23 C -0.195 4.195 24 C -0.213 4.213 25 H 0.093 0.907 26 H 0.160 0.840 27 H 0.154 0.846 28 H 0.163 0.837 29 H 0.169 0.831 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.573 -14.488 0.859 15.217 hybrid contribution -0.481 -1.634 0.361 1.741 sum 4.092 -16.122 1.221 16.678 Atomic orbital electron populations 1.70827 1.07770 1.32674 1.45483 1.27280 0.96572 1.05667 0.92018 0.82891 0.74072 0.70766 0.78091 1.19151 1.20710 1.19648 1.22161 0.95205 0.90983 1.58500 0.92313 1.19889 0.86781 0.82552 0.91770 0.98365 1.86492 1.48057 1.22551 1.70138 1.24441 0.87338 0.85058 0.73999 1.90585 1.24254 1.83653 1.44816 1.20425 0.97278 0.86782 1.05748 1.19537 0.99515 0.95826 0.94284 1.21144 0.98466 0.96931 0.93623 1.21313 0.99133 0.95417 1.01747 1.17970 0.97079 0.87528 0.91371 1.91474 1.81620 1.57680 1.81837 1.21331 1.02624 1.00923 0.92540 1.21150 0.94428 0.92819 1.01355 1.22826 0.92758 1.02015 1.00317 1.22654 0.94707 1.00861 1.01320 1.23258 1.03897 0.91112 1.03027 0.90712 0.84017 0.84550 0.83735 0.83087 0.82825 0.83218 0.89477 0.91255 0.88101 0.86920 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.38 21.45 0.29 -54.95 16 2 C -0.01 -0.80 5.30 84.66 0.45 -0.35 16 3 Si 1.12 48.79 29.90 68.60 2.05 50.84 16 4 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.63 -35.93 8.88 25.60 0.23 -35.71 16 8 H 0.06 3.30 7.81 -2.91 -0.02 3.27 16 9 C 0.24 12.93 2.00 29.85 0.06 12.99 16 10 H 0.00 -0.08 6.77 -2.39 -0.02 -0.09 16 11 O -0.36 -16.22 9.85 -51.43 -0.51 -16.72 16 12 C 0.45 16.85 7.17 71.23 0.51 17.36 16 13 O -0.54 -23.73 13.08 21.98 0.29 -23.44 16 14 C -0.07 -1.56 5.94 29.10 0.17 -1.39 16 15 C -0.09 -2.16 4.37 -19.86 -0.09 -2.24 16 16 C -0.08 -1.90 9.70 22.26 0.22 -1.69 16 17 C -0.16 -3.47 10.03 22.31 0.22 -3.25 16 18 C 0.08 1.85 7.30 22.38 0.16 2.02 16 19 F -0.15 -3.54 17.27 44.97 0.78 -2.77 16 20 C -0.16 -3.31 10.03 22.31 0.22 -3.08 16 21 C -0.08 -1.72 9.70 22.26 0.22 -1.51 16 22 C -0.16 -7.69 4.47 -10.80 -0.05 -7.74 16 23 C -0.16 -7.04 8.15 30.62 0.25 -6.79 16 24 C -0.18 -7.00 9.80 30.62 0.30 -6.70 16 25 H 0.28 16.34 3.56 -92.71 -0.33 16.01 16 26 H 0.14 2.55 8.09 -2.39 -0.02 2.53 16 27 H 0.14 2.61 8.08 -2.38 -0.02 2.59 16 28 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 29 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 30 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 31 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.09 4.33 8.11 -2.39 -0.02 4.31 16 33 H 0.07 3.36 7.42 -2.39 -0.02 3.34 16 34 H 0.10 4.12 8.14 -2.39 -0.02 4.10 16 35 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 36 H 0.09 3.82 5.37 -2.39 -0.01 3.81 16 Total: -1.00 -70.13 311.37 7.30 -62.82 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 1.53 Total: 22.30 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 2.88 Total: -38.08 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.29 Total: -54.95 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.22 Total: -40.16 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.05 Total: 50.84 kcal Total: -70.13 7.30 -62.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345978089.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.003 kcal (2) G-P(sol) polarization free energy of solvation -70.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds