Wall clock time and date at job start Tue Mar 31 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38476 * 119.82828 * 2 1 4 4 C 1.37829 * 120.22735 * 180.32493 * 3 2 1 5 5 C 1.39721 * 119.87315 * 359.41274 * 4 3 2 6 6 C 1.47559 * 120.17458 * 180.25712 * 5 4 3 7 7 O 1.21491 * 120.00111 * 180.02562 * 6 5 4 8 8 O 1.34733 * 119.99834 * 0.02562 * 6 5 4 9 9 C 1.45208 * 116.99990 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46819 * 330.00409 * 9 8 6 11 11 C 1.50698 * 109.47063 * 210.00452 * 9 8 6 12 12 H 1.08002 * 120.00089 * 359.97438 * 11 9 8 13 13 C 1.37881 * 119.99779 * 180.02562 * 11 9 8 14 14 N 1.31509 * 119.99905 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 119.99788 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47031 * 90.00160 * 15 13 11 17 17 H 1.48505 * 109.47189 * 209.99810 * 15 13 11 18 18 H 1.48498 * 109.47447 * 330.00120 * 15 13 11 19 19 C 1.52999 * 109.46749 * 90.00179 * 9 8 6 20 20 C 1.53005 * 117.50088 * 8.75079 * 19 9 8 21 21 C 1.52998 * 117.50038 * 300.08635 * 19 9 8 22 22 C 1.39882 * 119.65108 * 0.28763 * 5 4 3 23 23 F 1.35106 * 120.10935 * 180.02562 * 22 5 4 24 24 C 1.38210 * 119.82218 * 179.71765 * 2 1 3 25 25 H 1.08997 * 109.47759 * 270.28066 * 1 2 3 26 26 H 1.09003 * 109.46943 * 30.28406 * 1 2 3 27 27 H 1.08997 * 109.47097 * 150.28002 * 1 2 3 28 28 H 1.08005 * 119.88110 * 0.04082 * 3 2 1 29 29 H 1.08002 * 120.06707 * 179.69881 * 4 3 2 30 30 H 0.97003 * 120.00467 * 180.02562 * 14 13 11 31 31 H 1.09002 * 115.54810 * 154.42022 * 19 9 8 32 32 H 1.08998 * 117.49775 * 359.97438 * 20 19 9 33 33 H 1.09000 * 117.49919 * 145.01818 * 20 19 9 34 34 H 1.08996 * 117.49931 * 214.97858 * 21 19 9 35 35 H 1.08998 * 117.49962 * 359.97438 * 21 19 9 36 36 H 1.08002 * 119.93822 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2013 0.0000 4 6 3.5740 1.2109 -0.0068 5 6 4.2784 0.0043 -0.0012 6 6 5.7540 0.0068 -0.0027 7 8 6.3633 -1.0442 0.0017 8 8 6.4256 1.1748 -0.0088 9 6 7.8758 1.1014 -0.0093 10 1 8.1939 0.1966 0.5088 11 6 8.4401 2.3083 0.6949 12 1 7.7754 3.0560 1.1017 13 6 9.8051 2.4585 0.8189 14 7 10.6145 1.5488 0.3221 15 14 10.5046 3.9548 1.6911 16 1 10.6558 3.6584 3.1384 17 1 11.8310 4.2896 1.1133 18 1 9.5832 5.1061 1.5153 19 6 8.3842 1.0685 -1.4520 20 6 7.3661 1.3213 -2.5658 21 6 7.9188 -0.0881 -2.3389 22 6 3.5774 -1.2062 0.0051 23 9 4.2492 -2.3784 0.0110 24 6 2.1943 -1.1991 0.0059 25 1 -0.3634 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5183 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6510 2.1339 0.0007 29 1 4.1085 2.1494 -0.0116 30 1 11.5748 1.6542 0.4096 31 1 9.3973 1.4416 -1.6020 32 1 6.3340 1.5106 -2.2708 33 1 7.7095 1.8604 -3.4487 34 1 8.6256 -0.4755 -3.0726 35 1 7.2508 -0.8258 -1.8944 36 1 1.6504 -2.1321 0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346706087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:39 Heat of formation + Delta-G solvation = -85.544193 kcal Electronic energy + Delta-G solvation = -21521.277316 eV Core-core repulsion = 18078.770532 eV Total energy + Delta-G solvation = -3442.506783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.76444 -39.95773 -38.80981 -36.41494 -34.70208 -33.02337 -32.77227 -30.69853 -28.37794 -27.35367 -23.65013 -22.83639 -22.58894 -21.44070 -20.66940 -19.06672 -17.64408 -16.85543 -16.78194 -16.31655 -15.81169 -15.61064 -15.28661 -14.75080 -14.27164 -14.07945 -13.87526 -13.79673 -13.40044 -12.95698 -12.48056 -12.36225 -12.04552 -11.79485 -11.56019 -11.38549 -11.32363 -11.10723 -10.96048 -10.56629 -10.31230 -10.08902 -9.74959 -9.48288 -9.12650 -9.05977 -8.73984 -8.53113 -8.44720 -6.19537 -4.26975 0.65950 1.11751 2.90544 3.24234 3.29214 3.32475 3.49038 3.75022 4.13445 4.31760 4.52910 4.63549 4.92920 4.95439 5.06419 5.13247 5.28892 5.30386 5.37776 5.53819 5.82011 5.86605 5.93519 6.01178 6.10782 6.15005 6.16795 6.30098 6.46900 6.68084 6.73658 6.87319 7.03045 7.18478 7.55140 7.57912 7.81546 8.09557 8.56305 8.84402 9.37342 10.87714 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.004862 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.460419 B = 5757.362100 C = 6228.616473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.034 4.034 3 C -0.148 4.148 4 C -0.029 4.029 5 C -0.158 4.158 6 C 0.494 3.506 7 O -0.500 6.500 8 O -0.345 6.345 9 C 0.249 3.751 10 H 0.053 0.947 11 C -0.519 4.519 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.910 3.090 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 C -0.116 4.116 20 C -0.194 4.194 21 C -0.211 4.211 22 C 0.162 3.838 23 F -0.115 7.115 24 C -0.174 4.174 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.151 0.849 30 H 0.267 0.733 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.789 -1.116 -1.885 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.166 4.166 4 C -0.048 4.048 5 C -0.160 4.160 6 C 0.337 3.663 7 O -0.390 6.390 8 O -0.261 6.261 9 C 0.196 3.804 10 H 0.071 0.929 11 C -0.556 4.556 12 H 0.089 0.911 13 C -0.138 4.138 14 N -0.522 5.522 15 Si 0.737 3.263 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 C -0.134 4.134 20 C -0.231 4.231 21 C -0.248 4.248 22 C 0.143 3.857 23 F -0.093 7.093 24 C -0.193 4.193 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.153 0.847 29 H 0.169 0.831 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.316 -1.491 -1.908 17.485 hybrid contribution 0.803 0.356 0.292 0.926 sum -16.513 -1.135 -1.616 16.631 Atomic orbital electron populations 1.20873 0.90245 1.03363 1.02930 1.19954 0.96518 0.92220 0.94752 1.21083 0.93867 0.97984 1.03707 1.21496 0.93924 0.97633 0.91703 1.19546 0.91952 0.93479 1.11019 1.20713 0.87778 0.83734 0.74041 1.90818 1.69835 1.33034 1.45323 1.86532 1.26597 1.31191 1.81826 1.20195 0.68720 0.99547 0.91901 0.92901 1.20929 0.91645 1.06531 1.36535 0.91122 1.24901 0.96355 0.97088 0.95484 1.69980 1.03792 1.34020 1.44369 0.86296 0.78317 0.82133 0.79539 1.20390 1.20959 1.19551 1.23023 0.99890 0.98709 0.91823 1.22800 0.99669 0.99281 1.01359 1.23158 1.04682 0.92012 1.04905 1.17726 0.89740 0.80690 0.97587 1.91601 1.80457 1.44580 1.92681 1.20922 0.91473 0.99644 1.07285 0.90419 0.90836 0.91085 0.84677 0.83110 0.92362 0.85182 0.89859 0.90378 0.90463 0.88877 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.00 36.00 0.36 -0.38 16 2 C -0.03 -0.34 5.88 -104.55 -0.62 -0.96 16 3 C -0.15 -1.58 9.68 -39.64 -0.38 -1.96 16 4 C -0.03 -0.41 9.61 -39.18 -0.38 -0.79 16 5 C -0.16 -2.74 5.88 -104.93 -0.62 -3.36 16 6 C 0.49 10.84 6.85 34.53 0.24 11.08 16 7 O -0.50 -12.32 12.43 -19.26 -0.24 -12.56 16 8 O -0.35 -8.12 7.63 -40.58 -0.31 -8.43 16 9 C 0.25 6.62 2.41 -27.88 -0.07 6.55 16 10 H 0.05 1.58 7.16 -51.93 -0.37 1.21 16 11 C -0.52 -14.31 8.90 -34.44 -0.31 -14.62 16 12 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 13 C 0.06 1.75 5.20 -17.82 -0.09 1.66 16 14 N -0.88 -24.93 11.58 55.43 0.64 -24.28 16 15 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.12 -2.90 5.27 -90.62 -0.48 -3.38 16 20 C -0.19 -4.16 9.80 -26.69 -0.26 -4.42 16 21 C -0.21 -4.75 9.85 -26.69 -0.26 -5.02 16 22 C 0.16 2.58 7.29 -38.94 -0.28 2.29 16 23 F -0.12 -2.08 15.55 2.25 0.04 -2.05 16 24 C -0.17 -2.05 9.66 -39.56 -0.38 -2.43 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.15 2.05 7.61 -52.49 -0.40 1.65 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.13 3.52 6.46 -51.93 -0.34 3.18 16 32 H 0.08 1.74 6.91 -51.93 -0.36 1.38 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.09 2.21 5.36 -51.93 -0.28 1.93 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -30.87 310.67 -7.98 -38.86 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.24 Total: 3.71 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.53 Total: -15.72 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.64 Total: -24.28 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.55 Total: -20.99 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.87 -7.98 -38.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.688 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds