Wall clock time and date at job start Tue Mar 31 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38476 * 119.82828 * 2 1 4 4 C 1.37829 * 120.22735 * 180.32493 * 3 2 1 5 5 C 1.39721 * 119.87315 * 359.41274 * 4 3 2 6 6 C 1.47559 * 120.17458 * 180.25712 * 5 4 3 7 7 O 1.21491 * 120.00111 * 180.02562 * 6 5 4 8 8 O 1.34733 * 119.99834 * 0.02562 * 6 5 4 9 9 C 1.45208 * 116.99990 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46819 * 330.00409 * 9 8 6 11 11 C 1.50698 * 109.47063 * 210.00452 * 9 8 6 12 12 H 1.08002 * 120.00089 * 359.97438 * 11 9 8 13 13 C 1.37881 * 119.99779 * 180.02562 * 11 9 8 14 14 N 1.31509 * 119.99905 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 119.99788 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47031 * 90.00160 * 15 13 11 17 17 H 1.48505 * 109.47189 * 209.99810 * 15 13 11 18 18 H 1.48498 * 109.47447 * 330.00120 * 15 13 11 19 19 C 1.52999 * 109.46749 * 90.00179 * 9 8 6 20 20 C 1.53005 * 117.50088 * 8.75079 * 19 9 8 21 21 C 1.52998 * 117.50038 * 300.08635 * 19 9 8 22 22 C 1.39882 * 119.65108 * 0.28763 * 5 4 3 23 23 F 1.35106 * 120.10935 * 180.02562 * 22 5 4 24 24 C 1.38210 * 119.82218 * 179.71765 * 2 1 3 25 25 H 1.08997 * 109.47759 * 270.28066 * 1 2 3 26 26 H 1.09003 * 109.46943 * 30.28406 * 1 2 3 27 27 H 1.08997 * 109.47097 * 150.28002 * 1 2 3 28 28 H 1.08005 * 119.88110 * 0.04082 * 3 2 1 29 29 H 1.08002 * 120.06707 * 179.69881 * 4 3 2 30 30 H 0.97003 * 120.00467 * 180.02562 * 14 13 11 31 31 H 1.09002 * 115.54810 * 154.42022 * 19 9 8 32 32 H 1.08998 * 117.49775 * 359.97438 * 20 19 9 33 33 H 1.09000 * 117.49919 * 145.01818 * 20 19 9 34 34 H 1.08996 * 117.49931 * 214.97858 * 21 19 9 35 35 H 1.08998 * 117.49962 * 359.97438 * 21 19 9 36 36 H 1.08002 * 119.93822 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2013 0.0000 4 6 3.5740 1.2109 -0.0068 5 6 4.2784 0.0043 -0.0012 6 6 5.7540 0.0068 -0.0027 7 8 6.3633 -1.0442 0.0017 8 8 6.4256 1.1748 -0.0088 9 6 7.8758 1.1014 -0.0093 10 1 8.1939 0.1966 0.5088 11 6 8.4401 2.3083 0.6949 12 1 7.7754 3.0560 1.1017 13 6 9.8051 2.4585 0.8189 14 7 10.6145 1.5488 0.3221 15 14 10.5046 3.9548 1.6911 16 1 10.6558 3.6584 3.1384 17 1 11.8310 4.2896 1.1133 18 1 9.5832 5.1061 1.5153 19 6 8.3842 1.0685 -1.4520 20 6 7.3661 1.3213 -2.5658 21 6 7.9188 -0.0881 -2.3389 22 6 3.5774 -1.2062 0.0051 23 9 4.2492 -2.3784 0.0110 24 6 2.1943 -1.1991 0.0059 25 1 -0.3634 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5183 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6510 2.1339 0.0007 29 1 4.1085 2.1494 -0.0116 30 1 11.5748 1.6542 0.4096 31 1 9.3973 1.4416 -1.6020 32 1 6.3340 1.5106 -2.2708 33 1 7.7095 1.8604 -3.4487 34 1 8.6256 -0.4755 -3.0726 35 1 7.2508 -0.8258 -1.8944 36 1 1.6504 -2.1321 0.0109 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346706087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:39 Heat of formation + Delta-G solvation = -101.859651 kcal Electronic energy + Delta-G solvation = -21521.984807 eV Core-core repulsion = 18078.770532 eV Total energy + Delta-G solvation = -3443.214275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -50.04098 -41.60456 -39.99028 -38.24793 -36.55587 -34.90421 -33.95661 -31.70876 -30.13247 -28.55986 -25.54000 -24.00629 -23.84218 -23.23876 -22.09717 -20.93900 -19.26508 -18.63907 -18.09621 -17.77128 -17.46938 -17.14330 -16.73988 -16.48770 -15.69088 -15.43940 -15.18070 -14.66400 -14.44495 -14.39465 -14.32441 -13.68361 -13.33772 -13.08417 -13.04493 -12.80540 -12.76173 -12.72205 -12.38609 -12.31157 -12.22393 -11.98890 -11.48628 -11.39597 -11.07886 -10.52039 -10.47607 -10.06415 -9.79507 -8.27956 -6.45244 -0.49934 0.11509 1.41430 1.43781 1.49234 1.55226 1.84794 2.40005 2.54371 2.99243 3.05573 3.10805 3.53699 3.75573 3.86401 4.02155 4.13594 4.17903 4.21845 4.24121 4.59369 4.63777 4.70372 4.80426 4.91357 4.91766 4.99602 5.01852 5.14525 5.19212 5.24560 5.29210 5.42246 5.47224 5.53205 5.77762 5.82570 6.04218 6.58425 6.87644 7.24817 8.79870 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.004862 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.460419 B = 5757.362100 C = 6228.616473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.013 4.013 3 C -0.133 4.133 4 C -0.034 4.034 5 C -0.194 4.194 6 C 0.488 3.512 7 O -0.540 6.540 8 O -0.346 6.346 9 C 0.254 3.746 10 H 0.002 0.998 11 C -0.544 4.544 12 H 0.071 0.929 13 C 0.018 3.982 14 N -0.914 5.914 15 Si 0.982 3.018 16 H -0.274 1.274 17 H -0.276 1.276 18 H -0.259 1.259 19 C -0.144 4.144 20 C -0.163 4.163 21 C -0.206 4.206 22 C 0.136 3.864 23 F -0.139 7.139 24 C -0.166 4.166 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.176 0.824 29 H 0.148 0.852 30 H 0.270 0.730 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.107 0.706 -2.281 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.014 4.014 3 C -0.151 4.151 4 C -0.052 4.052 5 C -0.196 4.196 6 C 0.334 3.666 7 O -0.433 6.433 8 O -0.262 6.262 9 C 0.201 3.799 10 H 0.020 0.980 11 C -0.581 4.581 12 H 0.089 0.911 13 C -0.182 4.182 14 N -0.552 5.552 15 Si 0.805 3.195 16 H -0.199 1.199 17 H -0.201 1.201 18 H -0.183 1.183 19 C -0.162 4.162 20 C -0.200 4.200 21 C -0.243 4.243 22 C 0.116 3.884 23 F -0.117 7.117 24 C -0.184 4.184 25 H 0.113 0.887 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.194 0.806 29 H 0.166 0.834 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -20.666 0.332 -2.311 20.797 hybrid contribution 1.658 -0.262 0.428 1.733 sum -19.008 0.070 -1.883 19.101 Atomic orbital electron populations 1.21024 0.86635 1.05169 1.04474 1.20516 0.98803 0.91004 0.91037 1.21524 0.92240 1.00103 1.01218 1.21584 0.95567 0.96067 0.91955 1.19439 0.88838 0.95782 1.15560 1.21624 0.89793 0.82550 0.72588 1.90779 1.71124 1.33994 1.47424 1.86507 1.25037 1.32324 1.82340 1.19802 0.70457 0.97055 0.92564 0.98034 1.21221 0.92450 1.06897 1.37572 0.91100 1.25840 0.96382 1.00118 0.95845 1.70119 1.04119 1.35860 1.45090 0.85191 0.77731 0.78356 0.78188 1.19909 1.20139 1.18337 1.22734 0.99839 1.01652 0.92023 1.22877 0.98861 0.97957 1.00280 1.23128 1.04675 0.92117 1.04365 1.18166 0.91313 0.79453 0.99422 1.91533 1.81306 1.45727 1.93151 1.21292 0.89443 1.01908 1.05768 0.88679 0.88794 0.89675 0.80646 0.83397 0.92115 0.87409 0.89386 0.87432 0.88625 0.90438 0.81411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.00 71.23 0.71 -0.08 16 2 C -0.01 -0.21 5.88 -19.82 -0.12 -0.33 16 3 C -0.13 -2.32 9.68 22.23 0.22 -2.11 16 4 C -0.03 -0.90 9.61 22.53 0.22 -0.68 16 5 C -0.19 -6.94 5.88 -20.06 -0.12 -7.06 16 6 C 0.49 22.86 6.85 70.28 0.48 23.34 16 7 O -0.54 -28.92 12.43 19.86 0.25 -28.68 16 8 O -0.35 -17.21 7.63 -56.43 -0.43 -17.64 16 9 C 0.25 14.40 2.41 29.85 0.07 14.48 16 10 H 0.00 0.13 7.16 -2.38 -0.02 0.11 16 11 C -0.54 -31.26 8.90 25.60 0.23 -31.04 16 12 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 13 C 0.02 1.01 5.20 84.66 0.44 1.45 16 14 N -0.91 -53.53 11.58 21.45 0.25 -53.28 16 15 Si 0.98 43.15 29.54 68.60 2.03 45.18 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 C -0.14 -7.51 5.27 -10.79 -0.06 -7.56 16 20 C -0.16 -6.97 9.80 30.62 0.30 -6.67 16 21 C -0.21 -9.59 9.85 30.62 0.30 -9.29 16 22 C 0.14 4.38 7.29 22.69 0.17 4.54 16 23 F -0.14 -5.31 15.55 44.97 0.70 -4.61 16 24 C -0.17 -3.49 9.66 22.28 0.22 -3.28 16 25 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.09 0.36 8.08 -2.39 -0.02 0.34 16 27 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 28 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.15 3.97 7.61 -2.91 -0.02 3.95 16 30 H 0.27 14.77 8.31 -92.71 -0.77 13.99 16 31 H 0.11 6.11 6.46 -2.39 -0.02 6.09 16 32 H 0.09 3.67 6.91 -2.39 -0.02 3.66 16 33 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 34 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 35 H 0.08 3.88 5.36 -2.39 -0.01 3.87 16 36 H 0.17 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -73.52 310.67 6.95 -66.57 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.10 Total: 16.74 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.06 Total: -24.28 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.25 Total: -53.28 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.18 Total: -46.32 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.70 Total: -4.61 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.52 6.95 -66.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.286 kcal (2) G-P(sol) polarization free energy of solvation -73.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds