Wall clock time and date at job start Tue Mar 31 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38470 * 119.82786 * 2 1 4 4 C 1.37835 * 120.22966 * 180.02562 * 3 2 1 5 5 C 1.39715 * 119.87076 * 359.97438 * 4 3 2 6 6 C 1.47560 * 120.17224 * 179.97438 * 5 4 3 7 7 O 1.21493 * 120.00376 * 180.02562 * 6 5 4 8 8 O 1.34733 * 120.00156 * 0.02562 * 6 5 4 9 9 C 1.45195 * 117.00157 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.47290 * 29.98926 * 9 8 6 11 11 C 1.50694 * 109.47454 * 149.99446 * 9 8 6 12 12 H 1.08003 * 119.99852 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00371 * 179.97438 * 11 9 8 14 14 N 1.31510 * 119.99935 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00096 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47355 * 89.99903 * 15 13 11 17 17 H 1.48500 * 109.46818 * 210.00035 * 15 13 11 18 18 H 1.48499 * 109.47149 * 329.99529 * 15 13 11 19 19 C 1.53009 * 109.47020 * 269.99621 * 9 8 6 20 20 C 1.52998 * 117.49806 * 128.74548 * 19 9 8 21 21 C 1.52993 * 117.49650 * 60.08439 * 19 9 8 22 22 C 1.39878 * 119.65669 * 359.97438 * 5 4 3 23 23 F 1.35104 * 120.11514 * 180.02562 * 22 5 4 24 24 C 1.38209 * 119.82339 * 180.25323 * 2 1 3 25 25 H 1.08997 * 109.47079 * 90.00183 * 1 2 3 26 26 H 1.09001 * 109.47078 * 209.99849 * 1 2 3 27 27 H 1.09001 * 109.47444 * 330.00272 * 1 2 3 28 28 H 1.08007 * 119.88202 * 0.02562 * 3 2 1 29 29 H 1.07993 * 120.06289 * 179.97438 * 4 3 2 30 30 H 0.97002 * 120.00166 * 179.97438 * 14 13 11 31 31 H 1.08998 * 115.54393 * 274.41663 * 19 9 8 32 32 H 1.08997 * 117.49994 * 0.02562 * 20 19 9 33 33 H 1.09001 * 117.49488 * 145.02372 * 20 19 9 34 34 H 1.09003 * 117.50007 * 214.97668 * 21 19 9 35 35 H 1.09001 * 117.50716 * 0.02562 * 21 19 9 36 36 H 1.08001 * 119.93976 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2013 0.0000 4 6 3.5741 1.2109 -0.0005 5 6 4.2784 0.0043 -0.0005 6 6 5.7540 0.0069 -0.0017 7 8 6.3633 -1.0442 -0.0021 8 8 6.4256 1.1749 -0.0022 9 6 7.8757 1.1014 -0.0039 10 1 8.1930 0.1942 -0.5181 11 6 8.4389 2.3049 -0.7148 12 1 7.7735 3.0503 -1.1247 13 6 9.8036 2.4545 -0.8418 14 7 10.6139 1.5472 -0.3422 15 14 10.5017 3.9468 -1.7224 16 1 10.7230 5.0409 -0.7431 17 1 11.7927 3.5855 -2.3612 18 1 9.5443 4.4001 -2.7632 19 6 8.3867 1.0754 1.4381 20 6 9.3686 -0.0342 1.8197 21 6 7.9261 -0.0792 2.3300 22 6 3.5775 -1.2062 0.0006 23 9 4.2492 -2.3784 0.0011 24 6 2.1943 -1.1990 -0.0053 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6510 2.1339 0.0004 29 1 4.1085 2.1494 -0.0009 30 1 11.5741 1.6522 -0.4319 31 1 8.5220 2.0503 1.9065 32 1 9.6508 -0.7454 1.0434 33 1 10.1496 0.2106 2.5396 34 1 7.7588 0.1360 3.3854 35 1 7.2594 -0.8205 1.8896 36 1 1.6505 -2.1321 -0.0098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346706088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:43 Heat of formation + Delta-G solvation = -86.741997 kcal Electronic energy + Delta-G solvation = -21417.651372 eV Core-core repulsion = 17975.092648 eV Total energy + Delta-G solvation = -3442.558724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.74784 -39.86236 -38.73692 -36.32316 -34.85580 -32.98420 -32.61984 -30.68028 -28.34503 -27.31892 -23.59395 -22.81689 -22.48436 -21.22168 -20.58820 -19.22778 -17.72792 -16.81266 -16.75878 -16.15615 -15.74422 -15.67786 -14.98456 -14.68568 -14.30681 -14.10818 -13.82826 -13.81540 -13.38537 -12.89246 -12.64810 -12.32331 -12.00718 -11.78475 -11.50164 -11.35875 -11.29733 -11.02798 -10.94710 -10.40476 -10.27389 -9.81380 -9.71354 -9.36046 -9.04311 -9.01455 -8.72226 -8.63955 -8.41628 -6.14431 -4.22662 0.68157 1.13520 2.93419 3.25567 3.30695 3.33479 3.50939 3.77980 4.15157 4.34327 4.54550 4.65145 4.95223 5.04986 5.07965 5.16909 5.30931 5.31686 5.44526 5.56360 5.83805 5.94479 5.97502 6.05415 6.17365 6.19858 6.31053 6.42576 6.58827 6.67713 6.76230 7.02863 7.18521 7.27189 7.40515 7.62582 7.85440 8.10692 8.60466 8.88116 9.41779 10.92345 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.004855 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.583293 B = 5765.349590 C = 6473.033505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.035 4.035 3 C -0.149 4.149 4 C -0.029 4.029 5 C -0.157 4.157 6 C 0.496 3.504 7 O -0.503 6.503 8 O -0.345 6.345 9 C 0.250 3.750 10 H 0.049 0.951 11 C -0.528 4.528 12 H 0.069 0.931 13 C 0.069 3.931 14 N -0.872 5.872 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.230 4.230 22 C 0.162 3.838 23 F -0.115 7.115 24 C -0.175 4.175 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.151 0.849 30 H 0.264 0.736 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.311 -1.618 1.911 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.167 4.167 4 C -0.047 4.047 5 C -0.159 4.159 6 C 0.340 3.660 7 O -0.394 6.394 8 O -0.262 6.262 9 C 0.197 3.803 10 H 0.067 0.933 11 C -0.566 4.566 12 H 0.087 0.913 13 C -0.135 4.135 14 N -0.508 5.508 15 Si 0.734 3.266 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.134 4.134 20 C -0.160 4.160 21 C -0.267 4.267 22 C 0.142 3.858 23 F -0.093 7.093 24 C -0.194 4.194 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.169 0.831 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.832 -1.999 1.930 17.060 hybrid contribution 0.868 0.462 -0.318 1.034 sum -15.964 -1.537 1.611 16.119 Atomic orbital electron populations 1.20871 0.90272 1.03342 1.02911 1.19948 0.96498 0.92232 0.94831 1.21085 0.93882 0.97966 1.03741 1.21499 0.93896 0.97673 0.91640 1.19548 0.91999 0.93445 1.10881 1.20682 0.87723 0.83710 0.73925 1.90806 1.69855 1.33090 1.45618 1.86519 1.26610 1.31251 1.81771 1.20257 0.68863 0.99573 0.91584 0.93306 1.20888 0.91650 1.06916 1.37140 0.91270 1.24876 0.96380 0.96891 0.95350 1.70049 1.03504 1.33632 1.43605 0.86354 0.78384 0.82156 0.79686 1.20449 1.21045 1.19682 1.22598 1.02385 0.92543 0.95894 1.22362 0.90197 1.01936 1.01467 1.23286 1.00330 1.04590 0.98469 1.17726 0.89728 0.80696 0.97635 1.91598 1.80464 1.44584 1.92693 1.20918 0.91484 0.99623 1.07328 0.90442 0.91102 0.90851 0.84699 0.83087 0.92606 0.89281 0.89316 0.90766 0.91023 0.88868 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.00 36.01 0.36 -0.39 16 2 C -0.03 -0.35 5.88 -104.55 -0.62 -0.96 16 3 C -0.15 -1.59 9.67 -39.64 -0.38 -1.97 16 4 C -0.03 -0.40 9.62 -39.18 -0.38 -0.78 16 5 C -0.16 -2.73 5.88 -104.93 -0.62 -3.35 16 6 C 0.50 10.95 7.11 34.53 0.25 11.19 16 7 O -0.50 -12.38 12.43 -19.26 -0.24 -12.61 16 8 O -0.35 -8.23 9.10 -40.58 -0.37 -8.60 16 9 C 0.25 6.64 2.25 -27.88 -0.06 6.58 16 10 H 0.05 1.45 6.92 -51.93 -0.36 1.09 16 11 C -0.53 -14.63 8.88 -34.44 -0.31 -14.93 16 12 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 13 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 14 N -0.87 -24.26 11.43 55.43 0.63 -23.63 16 15 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 C -0.12 -2.87 4.47 -90.62 -0.41 -3.28 16 20 C -0.12 -2.89 9.04 -26.69 -0.24 -3.13 16 21 C -0.23 -5.14 9.80 -26.70 -0.26 -5.40 16 22 C 0.16 2.58 7.29 -38.94 -0.28 2.29 16 23 F -0.12 -2.09 15.55 2.25 0.04 -2.05 16 24 C -0.17 -2.06 9.66 -39.56 -0.38 -2.44 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.15 2.07 7.61 -52.49 -0.40 1.67 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.09 2.26 8.11 -51.93 -0.42 1.84 16 32 H 0.09 2.24 8.05 -51.93 -0.42 1.82 16 33 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.09 2.20 5.37 -51.93 -0.28 1.92 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -30.77 313.11 -8.04 -38.81 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -4.37 Total: 2.31 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -3.42 Total: -14.79 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.63 Total: -23.63 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.61 Total: -21.22 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.77 -8.04 -38.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.928 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds