Wall clock time and date at job start Tue Mar 31 2020 00:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38470 * 119.82786 * 2 1 4 4 C 1.37835 * 120.22966 * 180.02562 * 3 2 1 5 5 C 1.39715 * 119.87076 * 359.97438 * 4 3 2 6 6 C 1.47560 * 120.17224 * 179.97438 * 5 4 3 7 7 O 1.21493 * 120.00376 * 180.02562 * 6 5 4 8 8 O 1.34733 * 120.00156 * 0.02562 * 6 5 4 9 9 C 1.45195 * 117.00157 * 180.02562 * 8 6 5 10 10 H 1.09006 * 109.47290 * 29.98926 * 9 8 6 11 11 C 1.50694 * 109.47454 * 149.99446 * 9 8 6 12 12 H 1.08003 * 119.99852 * 359.97438 * 11 9 8 13 13 C 1.37878 * 120.00371 * 179.97438 * 11 9 8 14 14 N 1.31510 * 119.99935 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 120.00096 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47355 * 89.99903 * 15 13 11 17 17 H 1.48500 * 109.46818 * 210.00035 * 15 13 11 18 18 H 1.48499 * 109.47149 * 329.99529 * 15 13 11 19 19 C 1.53009 * 109.47020 * 269.99621 * 9 8 6 20 20 C 1.52998 * 117.49806 * 128.74548 * 19 9 8 21 21 C 1.52993 * 117.49650 * 60.08439 * 19 9 8 22 22 C 1.39878 * 119.65669 * 359.97438 * 5 4 3 23 23 F 1.35104 * 120.11514 * 180.02562 * 22 5 4 24 24 C 1.38209 * 119.82339 * 180.25323 * 2 1 3 25 25 H 1.08997 * 109.47079 * 90.00183 * 1 2 3 26 26 H 1.09001 * 109.47078 * 209.99849 * 1 2 3 27 27 H 1.09001 * 109.47444 * 330.00272 * 1 2 3 28 28 H 1.08007 * 119.88202 * 0.02562 * 3 2 1 29 29 H 1.07993 * 120.06289 * 179.97438 * 4 3 2 30 30 H 0.97002 * 120.00166 * 179.97438 * 14 13 11 31 31 H 1.08998 * 115.54393 * 274.41663 * 19 9 8 32 32 H 1.08997 * 117.49994 * 0.02562 * 20 19 9 33 33 H 1.09001 * 117.49488 * 145.02372 * 20 19 9 34 34 H 1.09003 * 117.50007 * 214.97668 * 21 19 9 35 35 H 1.09001 * 117.50716 * 0.02562 * 21 19 9 36 36 H 1.08001 * 119.93976 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2013 0.0000 4 6 3.5741 1.2109 -0.0005 5 6 4.2784 0.0043 -0.0005 6 6 5.7540 0.0069 -0.0017 7 8 6.3633 -1.0442 -0.0021 8 8 6.4256 1.1749 -0.0022 9 6 7.8757 1.1014 -0.0039 10 1 8.1930 0.1942 -0.5181 11 6 8.4389 2.3049 -0.7148 12 1 7.7735 3.0503 -1.1247 13 6 9.8036 2.4545 -0.8418 14 7 10.6139 1.5472 -0.3422 15 14 10.5017 3.9468 -1.7224 16 1 10.7230 5.0409 -0.7431 17 1 11.7927 3.5855 -2.3612 18 1 9.5443 4.4001 -2.7632 19 6 8.3867 1.0754 1.4381 20 6 9.3686 -0.0342 1.8197 21 6 7.9261 -0.0792 2.3300 22 6 3.5775 -1.2062 0.0006 23 9 4.2492 -2.3784 0.0011 24 6 2.1943 -1.1990 -0.0053 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6510 2.1339 0.0004 29 1 4.1085 2.1494 -0.0009 30 1 11.5741 1.6522 -0.4319 31 1 8.5220 2.0503 1.9065 32 1 9.6508 -0.7454 1.0434 33 1 10.1496 0.2106 2.5396 34 1 7.7588 0.1360 3.3854 35 1 7.2594 -0.8205 1.8896 36 1 1.6505 -2.1321 -0.0098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346706088.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:43 Heat of formation + Delta-G solvation = -102.796233 kcal Electronic energy + Delta-G solvation = -21418.347536 eV Core-core repulsion = 17975.092648 eV Total energy + Delta-G solvation = -3443.254888 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -50.02761 -41.49006 -39.95270 -38.20084 -36.74035 -34.73701 -33.94563 -31.69781 -30.09318 -28.54169 -25.46819 -23.91641 -23.82935 -23.12112 -22.03881 -21.15970 -19.37294 -18.50169 -18.14490 -17.64706 -17.27298 -17.12323 -16.64531 -16.48493 -15.75780 -15.47754 -15.16447 -14.70902 -14.46821 -14.39228 -14.36649 -13.61207 -13.33828 -13.05425 -12.99060 -12.81586 -12.76194 -12.69398 -12.31720 -12.29133 -12.17645 -11.80585 -11.50769 -11.28944 -10.98551 -10.64907 -10.46694 -10.05244 -9.78360 -8.22633 -6.40553 -0.48400 0.12499 1.42137 1.44165 1.51536 1.54526 1.85779 2.41349 2.55741 3.04445 3.06609 3.17199 3.56331 3.78154 3.88568 4.05196 4.14863 4.18998 4.25977 4.40361 4.55428 4.61986 4.73488 4.75315 4.91942 4.99464 5.01200 5.07060 5.15274 5.20509 5.29646 5.34322 5.42809 5.44299 5.52032 5.78691 5.80042 6.07448 6.61411 6.90613 7.28923 8.84013 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023552 B = 0.004855 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.583293 B = 5765.349590 C = 6473.033505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.014 4.014 3 C -0.134 4.134 4 C -0.034 4.034 5 C -0.193 4.193 6 C 0.489 3.511 7 O -0.541 6.541 8 O -0.350 6.350 9 C 0.254 3.746 10 H 0.004 0.996 11 C -0.556 4.556 12 H 0.067 0.933 13 C 0.025 3.975 14 N -0.896 5.896 15 Si 0.978 3.022 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.267 1.267 19 C -0.130 4.130 20 C -0.120 4.120 21 C -0.204 4.204 22 C 0.137 3.863 23 F -0.138 7.138 24 C -0.166 4.166 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.176 0.824 29 H 0.147 0.853 30 H 0.268 0.732 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.301 -0.110 2.280 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.014 4.014 3 C -0.151 4.151 4 C -0.052 4.052 5 C -0.195 4.195 6 C 0.336 3.664 7 O -0.434 6.434 8 O -0.266 6.266 9 C 0.201 3.799 10 H 0.021 0.979 11 C -0.594 4.594 12 H 0.085 0.915 13 C -0.177 4.177 14 N -0.532 5.532 15 Si 0.802 3.198 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.192 1.192 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.241 4.241 22 C 0.117 3.883 23 F -0.117 7.117 24 C -0.184 4.184 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.193 0.807 29 H 0.165 0.835 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -19.850 -0.492 2.306 19.990 hybrid contribution 1.618 -0.045 -0.452 1.680 sum -18.232 -0.537 1.854 18.334 Atomic orbital electron populations 1.21022 0.86639 1.05160 1.04459 1.20511 0.98797 0.91009 0.91108 1.21521 0.92230 1.00108 1.01277 1.21581 0.95568 0.96112 0.91955 1.19442 0.88907 0.95760 1.15439 1.21595 0.89761 0.82519 0.72520 1.90766 1.71110 1.33936 1.47630 1.86500 1.25287 1.32528 1.82321 1.19919 0.70478 0.97258 0.92255 0.97870 1.21159 0.92480 1.07328 1.38392 0.91506 1.25755 0.96355 0.99833 0.95755 1.70172 1.03791 1.35141 1.44053 0.85263 0.77518 0.78445 0.78622 1.19281 1.20511 1.19159 1.22432 1.04003 0.92947 0.95479 1.22279 0.91324 1.00841 1.01242 1.23253 0.98866 1.02390 0.99588 1.18151 0.91288 0.79438 0.99422 1.91533 1.81300 1.45684 1.93152 1.21291 0.89454 1.01885 1.05775 0.88698 0.89654 0.88827 0.80696 0.83495 0.92340 0.89704 0.91873 0.88890 0.87698 0.90347 0.81385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.00 71.24 0.71 -0.10 16 2 C -0.01 -0.22 5.88 -19.82 -0.12 -0.34 16 3 C -0.13 -2.38 9.67 22.23 0.22 -2.17 16 4 C -0.03 -0.93 9.62 22.53 0.22 -0.71 16 5 C -0.19 -6.98 5.88 -20.06 -0.12 -7.10 16 6 C 0.49 23.10 7.11 70.28 0.50 23.60 16 7 O -0.54 -28.83 12.43 19.86 0.25 -28.59 16 8 O -0.35 -17.74 9.10 -56.43 -0.51 -18.25 16 9 C 0.25 14.33 2.25 29.85 0.07 14.40 16 10 H 0.00 0.23 6.92 -2.38 -0.02 0.21 16 11 C -0.56 -32.01 8.88 25.60 0.23 -31.78 16 12 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 13 C 0.03 1.39 5.30 84.66 0.45 1.84 16 14 N -0.90 -51.19 11.43 21.45 0.25 -50.95 16 15 Si 0.98 43.14 29.54 68.60 2.03 45.17 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 19 C -0.13 -6.71 4.47 -10.79 -0.05 -6.76 16 20 C -0.12 -5.84 9.04 30.62 0.28 -5.56 16 21 C -0.20 -9.33 9.80 30.62 0.30 -9.03 16 22 C 0.14 4.40 7.29 22.69 0.17 4.57 16 23 F -0.14 -5.27 15.55 44.97 0.70 -4.57 16 24 C -0.17 -3.51 9.66 22.28 0.22 -3.29 16 25 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 27 H 0.09 0.38 8.08 -2.39 -0.02 0.36 16 28 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 29 H 0.15 4.05 7.61 -2.91 -0.02 4.03 16 30 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.08 4.42 8.11 -2.39 -0.02 4.40 16 32 H 0.06 3.38 8.05 -2.39 -0.02 3.37 16 33 H 0.09 4.13 8.14 -2.39 -0.02 4.11 16 34 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 35 H 0.08 3.87 5.37 -2.39 -0.01 3.85 16 36 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -72.33 313.11 6.86 -65.47 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.09 Total: 14.16 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 3.06 Total: -22.44 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.25 Total: -50.95 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.27 Total: -46.84 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.70 Total: -4.57 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.33 6.86 -65.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706088.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.329 kcal (2) G-P(sol) polarization free energy of solvation -72.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds