Wall clock time and date at job start Tue Mar 31 2020 00:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38194 * 120.09045 * 2 1 4 4 F 1.35098 * 119.95490 * 359.97438 * 3 2 1 5 5 C 1.38565 * 120.09373 * 180.25486 * 3 2 1 6 6 C 1.38353 * 120.28026 * 359.44484 * 5 3 2 7 7 C 1.37933 * 120.17790 * 0.55567 * 6 5 3 8 8 C 1.39588 * 120.08783 * 179.97438 * 2 1 3 9 9 C 1.47733 * 120.13926 * 0.02562 * 8 2 1 10 10 O 1.21472 * 119.99949 * 6.24293 * 9 8 2 11 11 O 1.34706 * 120.00181 * 186.24728 * 9 8 2 12 12 C 1.45191 * 117.00089 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47609 * 329.99842 * 12 11 9 14 14 C 1.50704 * 109.47583 * 209.99653 * 12 11 9 15 15 H 1.08008 * 119.99407 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00294 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99968 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99865 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47358 * 90.00154 * 18 16 14 20 20 H 1.48502 * 109.47204 * 210.00387 * 18 16 14 21 21 H 1.48502 * 109.46968 * 329.99822 * 18 16 14 22 22 C 1.53002 * 109.46960 * 89.99936 * 12 11 9 23 23 C 1.52995 * 117.50052 * 8.74895 * 22 12 11 24 24 C 1.53001 * 117.50137 * 300.08606 * 22 12 11 25 25 H 1.09007 * 109.46737 * 96.57422 * 1 2 3 26 26 H 1.09002 * 109.47376 * 216.57347 * 1 2 3 27 27 H 1.08997 * 109.47127 * 336.57802 * 1 2 3 28 28 H 1.07998 * 119.85805 * 179.72361 * 5 3 2 29 29 H 1.07997 * 119.90926 * 180.28022 * 6 5 3 30 30 H 1.07995 * 120.05005 * 179.70288 * 7 6 5 31 31 H 0.96999 * 119.99664 * 179.97438 * 17 16 14 32 32 H 1.09007 * 115.55294 * 154.42029 * 22 12 11 33 33 H 1.09001 * 117.49973 * 359.97438 * 23 22 12 34 34 H 1.08997 * 117.50480 * 145.02041 * 23 22 12 35 35 H 1.08998 * 117.49930 * 214.98500 * 24 22 12 36 36 H 1.09000 * 117.49471 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3662 -0.0005 5 6 3.5855 1.1958 -0.0053 6 6 4.2832 0.0011 0.0009 7 6 3.6033 -1.1990 0.0009 8 6 2.2068 -1.2078 0.0005 9 6 1.4732 -2.4901 0.0005 10 8 0.2640 -2.4981 -0.1143 11 8 2.1453 -3.6506 0.1280 12 6 1.3596 -4.8716 0.1203 13 1 0.3708 -4.6701 0.5322 14 6 2.0489 -5.9179 0.9577 15 1 2.9839 -5.6879 1.4472 16 6 1.4856 -7.1682 1.0999 17 7 0.3470 -7.4480 0.5043 18 14 2.3397 -8.4648 2.1385 19 1 1.8666 -8.3650 3.5425 20 1 2.0238 -9.8140 1.6044 21 1 3.8079 -8.2463 2.0941 22 6 1.2200 -5.3790 -1.3164 23 6 2.0544 -4.6853 -2.3949 24 6 0.5426 -4.4541 -2.3296 25 1 -0.3633 -0.1177 -1.0210 26 1 -0.3634 -0.8253 0.6123 27 1 -0.3633 0.9430 0.4085 28 1 4.1231 2.1324 -0.0098 29 1 5.3632 0.0082 0.0013 30 1 4.1500 -2.1303 0.0009 31 1 -0.0491 -8.3278 0.6040 32 1 1.0514 -6.4508 -1.4222 33 1 2.7027 -3.8672 -2.0811 34 1 2.4346 -5.3005 -3.2104 35 1 -0.0712 -4.9173 -3.1021 36 1 0.1962 -3.4842 -1.9726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:49 Heat of formation + Delta-G solvation = -81.056593 kcal Electronic energy + Delta-G solvation = -21641.063565 eV Core-core repulsion = 18198.751378 eV Total energy + Delta-G solvation = -3442.312186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -48.96742 -40.24009 -38.58558 -36.48607 -34.84895 -32.86593 -32.66605 -30.98612 -28.01264 -27.05868 -24.29634 -23.19429 -21.79861 -21.48593 -20.75764 -19.15482 -17.91845 -16.90294 -16.56619 -16.02891 -15.87280 -15.77857 -15.58656 -15.22164 -14.60812 -13.99979 -13.64896 -13.28605 -13.23952 -12.85154 -12.51879 -12.23388 -11.96111 -11.84485 -11.73679 -11.38016 -11.25676 -11.10971 -10.98366 -10.60851 -10.32005 -10.12396 -9.61414 -9.51861 -9.14018 -9.05191 -8.69252 -8.57166 -8.47892 -6.22883 -4.30289 0.67537 1.09310 2.86629 3.22125 3.26715 3.30143 3.42054 3.73250 4.19927 4.30676 4.65431 4.71481 4.89706 4.94094 5.10105 5.10660 5.28424 5.59525 5.74090 5.82412 5.86680 5.93265 6.01595 6.05060 6.10190 6.20506 6.23793 6.42408 6.43377 6.65671 6.73607 6.86348 6.98478 7.14074 7.50868 7.54391 7.77776 8.05709 8.50986 8.80714 9.34365 10.84309 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.004826 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.475863 B = 5800.948231 C = 6115.505846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 C 0.077 3.923 4 F -0.137 7.137 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.067 4.067 8 C -0.092 4.092 9 C 0.496 3.504 10 O -0.501 6.501 11 O -0.344 6.344 12 C 0.249 3.751 13 H 0.054 0.946 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.910 3.090 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.116 4.116 23 C -0.194 4.194 24 C -0.210 4.210 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.267 0.733 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 13.419 -2.143 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.058 4.058 3 C 0.058 3.942 4 F -0.116 7.116 5 C -0.143 4.143 6 C -0.132 4.132 7 C -0.086 4.086 8 C -0.094 4.094 9 C 0.340 3.660 10 O -0.393 6.393 11 O -0.260 6.260 12 C 0.197 3.803 13 H 0.072 0.928 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.138 4.138 17 N -0.522 5.522 18 Si 0.737 3.263 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.135 4.135 23 C -0.231 4.231 24 C -0.247 4.247 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.166 0.834 31 H 0.077 0.923 32 H 0.148 0.852 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.159 13.238 -2.199 14.377 hybrid contribution 0.178 -0.550 0.328 0.664 sum 5.337 12.688 -1.871 13.891 Atomic orbital electron populations 1.21076 0.88938 1.03675 1.04280 1.20048 0.97922 0.90423 0.97391 1.17294 0.89950 0.80781 1.06144 1.91478 1.80444 1.45453 1.94184 1.21324 0.92059 1.00076 1.00846 1.20982 1.00529 0.91076 1.00616 1.21651 0.92923 0.99542 0.94460 1.19106 0.93620 0.90809 1.05818 1.20839 0.85962 0.85383 0.73794 1.90718 1.15056 1.87930 1.45559 1.86543 1.43114 1.15403 1.80955 1.20197 0.92164 0.76061 0.91875 0.92847 1.20933 1.08913 0.95848 1.30004 0.91123 1.24892 0.94977 0.98082 0.95822 1.69977 1.17392 1.22373 1.42436 0.86304 0.79848 0.80126 0.80069 1.20379 1.20951 1.19544 1.23026 0.99637 0.99879 0.90930 1.22801 0.93503 1.04121 1.02706 1.23153 0.94440 1.02861 1.04240 0.90131 0.87888 0.92046 0.84466 0.84321 0.83406 0.92349 0.85218 0.89835 0.90396 0.90503 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 8.61 36.01 0.31 -1.53 16 2 C -0.06 -0.85 5.92 -104.13 -0.62 -1.47 16 3 C 0.08 1.02 7.24 -39.48 -0.29 0.73 16 4 F -0.14 -1.79 16.37 2.25 0.04 -1.75 16 5 C -0.12 -1.33 10.02 -39.42 -0.39 -1.73 16 6 C -0.11 -1.21 10.03 -39.65 -0.40 -1.61 16 7 C -0.07 -0.92 9.61 -39.17 -0.38 -1.29 16 8 C -0.09 -1.51 5.87 -104.99 -0.62 -2.13 16 9 C 0.50 10.03 6.78 34.61 0.23 10.27 16 10 O -0.50 -10.94 10.44 -19.24 -0.20 -11.14 16 11 O -0.34 -7.71 7.65 -40.51 -0.31 -8.02 16 12 C 0.25 6.37 2.41 -27.88 -0.07 6.30 16 13 H 0.05 1.52 7.16 -51.93 -0.37 1.15 16 14 C -0.52 -13.98 8.90 -34.44 -0.31 -14.28 16 15 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 16 C 0.07 1.73 5.20 -17.82 -0.09 1.64 16 17 N -0.88 -24.39 11.59 55.43 0.64 -23.75 16 18 Si 0.91 20.49 29.54 -169.99 -5.02 15.46 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C -0.12 -2.80 5.27 -90.62 -0.48 -3.27 16 23 C -0.19 -4.00 9.80 -26.69 -0.26 -4.26 16 24 C -0.21 -4.50 9.85 -26.69 -0.26 -4.76 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.10 1.73 5.86 -51.93 -0.30 1.43 16 27 H 0.06 0.79 7.46 -51.93 -0.39 0.40 16 28 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.15 1.97 7.63 -52.49 -0.40 1.57 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.13 3.42 6.46 -51.93 -0.34 3.08 16 33 H 0.08 1.67 6.91 -51.93 -0.36 1.31 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 36 H 0.09 2.06 5.36 -51.93 -0.28 1.78 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -28.38 305.91 -7.95 -36.33 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.09 Total: 5.64 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -3.61 Total: -17.39 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.64 Total: -23.75 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.51 Total: -19.16 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.38 -7.95 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.722 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds