Wall clock time and date at job start Tue Mar 31 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38194 * 120.09045 * 2 1 4 4 F 1.35098 * 119.95490 * 359.97438 * 3 2 1 5 5 C 1.38565 * 120.09373 * 180.25486 * 3 2 1 6 6 C 1.38353 * 120.28026 * 359.44484 * 5 3 2 7 7 C 1.37933 * 120.17790 * 0.55567 * 6 5 3 8 8 C 1.39588 * 120.08783 * 179.97438 * 2 1 3 9 9 C 1.47733 * 120.13926 * 0.02562 * 8 2 1 10 10 O 1.21472 * 119.99949 * 6.24293 * 9 8 2 11 11 O 1.34706 * 120.00181 * 186.24728 * 9 8 2 12 12 C 1.45191 * 117.00089 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47609 * 329.99842 * 12 11 9 14 14 C 1.50704 * 109.47583 * 209.99653 * 12 11 9 15 15 H 1.08008 * 119.99407 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00294 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99968 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99865 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47358 * 90.00154 * 18 16 14 20 20 H 1.48502 * 109.47204 * 210.00387 * 18 16 14 21 21 H 1.48502 * 109.46968 * 329.99822 * 18 16 14 22 22 C 1.53002 * 109.46960 * 89.99936 * 12 11 9 23 23 C 1.52995 * 117.50052 * 8.74895 * 22 12 11 24 24 C 1.53001 * 117.50137 * 300.08606 * 22 12 11 25 25 H 1.09007 * 109.46737 * 96.57422 * 1 2 3 26 26 H 1.09002 * 109.47376 * 216.57347 * 1 2 3 27 27 H 1.08997 * 109.47127 * 336.57802 * 1 2 3 28 28 H 1.07998 * 119.85805 * 179.72361 * 5 3 2 29 29 H 1.07997 * 119.90926 * 180.28022 * 6 5 3 30 30 H 1.07995 * 120.05005 * 179.70288 * 7 6 5 31 31 H 0.96999 * 119.99664 * 179.97438 * 17 16 14 32 32 H 1.09007 * 115.55294 * 154.42029 * 22 12 11 33 33 H 1.09001 * 117.49973 * 359.97438 * 23 22 12 34 34 H 1.08997 * 117.50480 * 145.02041 * 23 22 12 35 35 H 1.08998 * 117.49930 * 214.98500 * 24 22 12 36 36 H 1.09000 * 117.49471 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5253 2.3662 -0.0005 5 6 3.5855 1.1958 -0.0053 6 6 4.2832 0.0011 0.0009 7 6 3.6033 -1.1990 0.0009 8 6 2.2068 -1.2078 0.0005 9 6 1.4732 -2.4901 0.0005 10 8 0.2640 -2.4981 -0.1143 11 8 2.1453 -3.6506 0.1280 12 6 1.3596 -4.8716 0.1203 13 1 0.3708 -4.6701 0.5322 14 6 2.0489 -5.9179 0.9577 15 1 2.9839 -5.6879 1.4472 16 6 1.4856 -7.1682 1.0999 17 7 0.3470 -7.4480 0.5043 18 14 2.3397 -8.4648 2.1385 19 1 1.8666 -8.3650 3.5425 20 1 2.0238 -9.8140 1.6044 21 1 3.8079 -8.2463 2.0941 22 6 1.2200 -5.3790 -1.3164 23 6 2.0544 -4.6853 -2.3949 24 6 0.5426 -4.4541 -2.3296 25 1 -0.3633 -0.1177 -1.0210 26 1 -0.3634 -0.8253 0.6123 27 1 -0.3633 0.9430 0.4085 28 1 4.1231 2.1324 -0.0098 29 1 5.3632 0.0082 0.0013 30 1 4.1500 -2.1303 0.0009 31 1 -0.0491 -8.3278 0.6040 32 1 1.0514 -6.4508 -1.4222 33 1 2.7027 -3.8672 -2.0811 34 1 2.4346 -5.3005 -3.2104 35 1 -0.0712 -4.9173 -3.1021 36 1 0.1962 -3.4842 -1.9726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346707995.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:48 Heat of formation + Delta-G solvation = -94.521040 kcal Electronic energy + Delta-G solvation = -21641.647427 eV Core-core repulsion = 18198.751378 eV Total energy + Delta-G solvation = -3442.896049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -49.97471 -41.75625 -39.86192 -38.15984 -36.58059 -34.87877 -33.77473 -32.12998 -29.88860 -28.24297 -25.82162 -24.85661 -23.22755 -22.93763 -22.13604 -20.93494 -19.32032 -18.70238 -17.94837 -17.61258 -17.19185 -16.86064 -16.76570 -16.74580 -16.26373 -15.69394 -14.90268 -14.52827 -14.47585 -14.29125 -14.10288 -13.62456 -13.49842 -13.20064 -13.01165 -12.99278 -12.86246 -12.79419 -12.36084 -12.31764 -12.19744 -11.95858 -11.35779 -11.23726 -10.93191 -10.48037 -10.43146 -10.11619 -9.72310 -8.26340 -6.42660 -0.44815 0.07851 1.42769 1.44337 1.51739 1.55890 1.86206 2.40946 2.56331 3.01651 3.14253 3.20662 3.61538 3.65535 3.89819 3.92639 4.06565 4.23199 4.25921 4.28431 4.55551 4.59668 4.63583 4.75117 4.79220 4.93649 4.99301 5.02058 5.13713 5.23839 5.24146 5.29209 5.30606 5.52119 5.57105 5.76018 5.88622 6.08996 6.61428 6.93030 7.27574 8.81134 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.004826 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.475863 B = 5800.948231 C = 6115.505846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.072 4.072 3 C 0.071 3.929 4 F -0.137 7.137 5 C -0.101 4.101 6 C -0.095 4.095 7 C -0.070 4.070 8 C -0.119 4.119 9 C 0.489 3.511 10 O -0.528 6.528 11 O -0.348 6.348 12 C 0.257 3.743 13 H 0.007 0.993 14 C -0.543 4.543 15 H 0.069 0.931 16 C 0.020 3.980 17 N -0.913 5.913 18 Si 0.978 3.022 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.261 1.261 22 C -0.145 4.145 23 C -0.166 4.166 24 C -0.202 4.202 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.178 0.822 29 H 0.183 0.817 30 H 0.148 0.852 31 H 0.269 0.731 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.558 14.965 -2.450 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.073 4.073 3 C 0.052 3.948 4 F -0.115 7.115 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.089 4.089 8 C -0.121 4.121 9 C 0.336 3.664 10 O -0.420 6.420 11 O -0.264 6.264 12 C 0.204 3.796 13 H 0.025 0.975 14 C -0.581 4.581 15 H 0.087 0.913 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.801 3.199 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.185 1.185 22 C -0.164 4.164 23 C -0.203 4.203 24 C -0.239 4.239 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.196 0.804 29 H 0.201 0.799 30 H 0.165 0.835 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.040 14.809 -2.512 17.037 hybrid contribution -0.720 -0.892 0.427 1.223 sum 7.321 13.917 -2.085 15.863 Atomic orbital electron populations 1.20954 0.89722 1.03348 1.03529 1.20063 0.97727 0.91048 0.98474 1.17414 0.90997 0.79928 1.06429 1.91483 1.80712 1.45128 1.94213 1.21808 0.90823 1.01876 0.97461 1.21424 1.02483 0.89415 0.97951 1.21796 0.91599 1.01190 0.94279 1.18931 0.94789 0.88805 1.09535 1.21627 0.86093 0.85916 0.72772 1.90705 1.16333 1.88216 1.46767 1.86511 1.42747 1.15461 1.81681 1.19760 0.90118 0.77154 0.92607 0.97536 1.21230 1.09118 0.96824 1.30883 0.91273 1.25772 0.95485 1.00008 0.96750 1.70108 1.18675 1.22914 1.43405 0.85255 0.79112 0.77275 0.78226 1.19958 1.20273 1.18492 1.22724 1.03609 0.98862 0.91171 1.22874 0.92855 1.03347 1.01174 1.23135 0.95739 1.01689 1.03347 0.90625 0.90669 0.90331 0.80420 0.79945 0.83466 0.92181 0.87729 0.89196 0.87850 0.88896 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.68 8.61 71.24 0.61 -3.07 16 2 C -0.07 -2.14 5.92 -19.55 -0.12 -2.26 16 3 C 0.07 1.70 7.24 22.34 0.16 1.86 16 4 F -0.14 -3.24 16.37 44.97 0.74 -2.50 16 5 C -0.10 -1.70 10.02 22.38 0.22 -1.47 16 6 C -0.10 -1.58 10.03 22.22 0.22 -1.36 16 7 C -0.07 -1.78 9.61 22.54 0.22 -1.56 16 8 C -0.12 -3.91 5.87 -20.10 -0.12 -4.03 16 9 C 0.49 20.74 6.78 70.33 0.48 21.22 16 10 O -0.53 -24.68 10.44 19.93 0.21 -24.48 16 11 O -0.35 -16.23 7.65 -56.16 -0.43 -16.66 16 12 C 0.26 13.82 2.41 29.85 0.07 13.89 16 13 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16 14 C -0.54 -30.28 8.90 25.60 0.23 -30.05 16 15 H 0.07 3.76 7.81 -2.91 -0.02 3.73 16 16 C 0.02 1.09 5.20 84.65 0.44 1.53 16 17 N -0.91 -52.16 11.59 21.45 0.25 -51.92 16 18 Si 0.98 42.38 29.54 68.60 2.03 44.41 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 C -0.14 -7.22 5.27 -10.79 -0.06 -7.28 16 23 C -0.17 -6.73 9.80 30.62 0.30 -6.43 16 24 C -0.20 -8.81 9.85 30.62 0.30 -8.51 16 25 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.07 2.73 5.86 -2.39 -0.01 2.72 16 27 H 0.08 2.05 7.46 -2.39 -0.02 2.04 16 28 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 30 H 0.15 3.70 7.63 -2.91 -0.02 3.67 16 31 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.10 5.74 6.46 -2.38 -0.02 5.73 16 33 H 0.09 3.53 6.91 -2.39 -0.02 3.51 16 34 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 36 H 0.08 3.84 5.36 -2.39 -0.01 3.82 16 Total: -1.00 -65.48 305.91 6.86 -58.62 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.11 Total: 20.05 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 2.97 Total: -27.52 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.25 Total: -51.92 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.22 Total: -41.14 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.74 Total: -2.50 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -65.48 6.86 -58.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707995.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.903 kcal (2) G-P(sol) polarization free energy of solvation -65.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds