Wall clock time and date at job start Tue Mar 31 2020 00:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38195 * 120.09247 * 2 1 4 4 F 1.35098 * 119.95267 * 359.95332 * 3 2 1 5 5 C 1.38556 * 120.09726 * 180.23367 * 3 2 1 6 6 C 1.38351 * 120.27958 * 359.48899 * 5 3 2 7 7 C 1.37939 * 120.17882 * 0.51082 * 6 5 3 8 8 C 1.39586 * 120.08645 * 179.97438 * 2 1 3 9 9 C 1.47733 * 120.13836 * 0.04434 * 8 2 1 10 10 O 1.21468 * 119.99997 * 6.20036 * 9 8 2 11 11 O 1.34709 * 119.99897 * 186.19850 * 9 8 2 12 12 C 1.45208 * 116.99941 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46781 * 30.00192 * 12 11 9 14 14 C 1.50697 * 109.46986 * 149.99716 * 12 11 9 15 15 H 1.08004 * 120.00437 * 359.97438 * 14 12 11 16 16 C 1.37875 * 119.99998 * 179.97438 * 14 12 11 17 17 N 1.31519 * 119.99767 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00267 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47207 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46942 * 120.00286 * 18 16 14 21 21 H 1.48495 * 109.47423 * 240.00378 * 18 16 14 22 22 C 1.52995 * 109.46923 * 269.99820 * 12 11 9 23 23 C 1.53003 * 117.49884 * 128.74630 * 22 12 11 24 24 C 1.53003 * 117.49934 * 60.08953 * 22 12 11 25 25 H 1.09004 * 109.47013 * 96.57072 * 1 2 3 26 26 H 1.08994 * 109.47229 * 216.57246 * 1 2 3 27 27 H 1.08997 * 109.46708 * 336.57560 * 1 2 3 28 28 H 1.08000 * 119.86581 * 179.74173 * 5 3 2 29 29 H 1.08002 * 119.91728 * 180.26340 * 6 5 3 30 30 H 1.07995 * 120.04978 * 179.72943 * 7 6 5 31 31 H 0.97000 * 119.99893 * 179.97438 * 17 16 14 32 32 H 1.08992 * 115.55167 * 274.41589 * 22 12 11 33 33 H 1.09002 * 117.49471 * 0.02562 * 23 22 12 34 34 H 1.08991 * 117.50105 * 145.01843 * 23 22 12 35 35 H 1.09003 * 117.49640 * 214.97910 * 24 22 12 36 36 H 1.09000 * 117.49676 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5254 2.3662 -0.0010 5 6 3.5855 1.1958 -0.0049 6 6 4.2832 0.0011 0.0009 7 6 3.6032 -1.1990 0.0009 8 6 2.2068 -1.2078 0.0005 9 6 1.4731 -2.4901 0.0001 10 8 0.2639 -2.4979 -0.1143 11 8 2.1453 -3.6506 0.1266 12 6 1.3596 -4.8718 0.1174 13 1 0.4681 -4.7256 -0.4924 14 6 2.1834 -5.9947 -0.4584 15 1 3.1960 -5.8091 -0.7852 16 6 1.6445 -7.2590 -0.5681 17 7 0.4113 -7.4849 -0.1707 18 14 2.6653 -8.6508 -1.2825 19 1 4.0097 -8.1395 -1.6518 20 1 2.8069 -9.7298 -0.2721 21 1 1.9910 -9.1895 -2.4909 22 6 0.9471 -5.2236 1.5480 23 6 -0.5344 -5.5047 1.8072 24 6 0.0974 -4.2040 2.3092 25 1 -0.3633 -0.1176 -1.0210 26 1 -0.3633 -0.8253 0.6123 27 1 -0.3633 0.9430 0.4085 28 1 4.1232 2.1324 -0.0091 29 1 5.3632 0.0081 0.0013 30 1 4.1500 -2.1303 0.0010 31 1 0.0320 -8.3743 -0.2482 32 1 1.6758 -5.7982 2.1196 33 1 -1.2150 -5.4394 0.9583 34 1 -0.7802 -6.2640 2.5495 35 1 0.2670 -4.1081 3.3817 36 1 -0.1673 -3.2824 1.7908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346707996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:53 Heat of formation + Delta-G solvation = -82.357027 kcal Electronic energy + Delta-G solvation = -21554.103758 eV Core-core repulsion = 18111.735181 eV Total energy + Delta-G solvation = -3442.368577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.95461 -40.15381 -38.49798 -36.38592 -35.02358 -32.71376 -32.62588 -30.96350 -27.97002 -27.04181 -24.26728 -23.09388 -21.74370 -21.27640 -20.68406 -19.30474 -18.00062 -16.82937 -16.54643 -15.95613 -15.85967 -15.76110 -15.40985 -15.11630 -14.58137 -13.95503 -13.58924 -13.36634 -13.22722 -12.85846 -12.55437 -12.28452 -11.93291 -11.81338 -11.67148 -11.37750 -11.21556 -11.06759 -10.93696 -10.44968 -10.27970 -9.85159 -9.54853 -9.39497 -9.05634 -9.03310 -8.68715 -8.66822 -8.45956 -6.18176 -4.26221 0.69802 1.11111 2.89703 3.22313 3.28207 3.31855 3.44063 3.76112 4.21698 4.32794 4.66934 4.72582 4.95085 4.99534 5.12328 5.16123 5.35438 5.61344 5.76549 5.87551 5.92327 5.96602 6.03381 6.12540 6.22410 6.23473 6.37612 6.42497 6.56077 6.65777 6.78341 6.98117 7.13283 7.23439 7.36406 7.58577 7.81371 8.06361 8.55112 8.84431 9.38555 10.88602 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.004880 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.223730 B = 5736.834193 C = 6422.617421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C 0.077 3.923 4 F -0.137 7.137 5 C -0.125 4.125 6 C -0.114 4.114 7 C -0.067 4.067 8 C -0.091 4.091 9 C 0.498 3.502 10 O -0.504 6.504 11 O -0.344 6.344 12 C 0.250 3.750 13 H 0.050 0.950 14 C -0.528 4.528 15 H 0.070 0.930 16 C 0.069 3.931 17 N -0.872 5.872 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.229 4.229 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.264 0.736 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 13.472 1.650 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C 0.058 3.942 4 F -0.116 7.116 5 C -0.144 4.144 6 C -0.132 4.132 7 C -0.085 4.085 8 C -0.093 4.093 9 C 0.342 3.658 10 O -0.396 6.396 11 O -0.260 6.260 12 C 0.198 3.802 13 H 0.068 0.932 14 C -0.566 4.566 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.508 5.508 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.266 4.266 25 H 0.099 0.901 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.167 0.833 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.131 13.293 1.635 14.015 hybrid contribution 0.276 -0.696 -0.263 0.794 sum 4.407 12.596 1.372 13.415 Atomic orbital electron populations 1.21069 0.88965 1.03586 1.04288 1.20045 0.97902 0.90427 0.97451 1.17291 0.89950 0.80775 1.06203 1.91476 1.80449 1.45472 1.94195 1.21316 0.92060 1.00065 1.00911 1.20986 1.00522 0.91087 1.00650 1.21665 0.92951 0.99547 0.94357 1.19112 0.93624 0.90821 1.05702 1.20805 0.85915 0.85363 0.73670 1.90706 1.15080 1.87899 1.45941 1.86537 1.43168 1.15372 1.80941 1.20267 0.91819 0.76443 0.91718 0.93240 1.20929 1.00621 0.92362 1.42657 0.91213 1.24873 0.95216 0.98353 0.95043 1.70056 1.13372 1.22146 1.45232 0.86308 0.80233 0.81421 0.78696 1.19521 1.20808 1.20814 1.22600 0.93791 0.99853 0.97191 1.22367 0.96618 0.95605 1.01415 1.23281 1.09149 0.95414 0.98772 0.90126 0.87938 0.92096 0.84496 0.84338 0.83349 0.92647 0.89300 0.89287 0.90773 0.91025 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.61 36.01 0.31 -1.51 16 2 C -0.06 -0.86 5.92 -104.13 -0.62 -1.48 16 3 C 0.08 1.01 7.23 -39.48 -0.29 0.73 16 4 F -0.14 -1.80 16.37 2.25 0.04 -1.76 16 5 C -0.12 -1.35 10.02 -39.42 -0.39 -1.74 16 6 C -0.11 -1.22 10.03 -39.65 -0.40 -1.62 16 7 C -0.07 -0.92 9.61 -39.16 -0.38 -1.29 16 8 C -0.09 -1.50 5.87 -104.99 -0.62 -2.12 16 9 C 0.50 10.13 7.05 34.61 0.24 10.38 16 10 O -0.50 -10.99 10.43 -19.24 -0.20 -11.19 16 11 O -0.34 -7.82 9.11 -40.52 -0.37 -8.19 16 12 C 0.25 6.38 2.25 -27.89 -0.06 6.31 16 13 H 0.05 1.40 6.92 -51.93 -0.36 1.04 16 14 C -0.53 -14.25 8.88 -34.44 -0.31 -14.55 16 15 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 16 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 17 N -0.87 -23.72 11.43 55.43 0.63 -23.09 16 18 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.12 -2.77 4.47 -90.62 -0.41 -3.17 16 23 C -0.12 -2.78 9.04 -26.69 -0.24 -3.02 16 24 C -0.23 -4.85 9.80 -26.69 -0.26 -5.11 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.10 1.70 5.86 -51.93 -0.30 1.40 16 27 H 0.06 0.78 7.46 -51.93 -0.39 0.40 16 28 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.15 2.00 7.63 -52.49 -0.40 1.60 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.09 2.20 8.11 -51.93 -0.42 1.77 16 33 H 0.09 2.15 8.05 -51.93 -0.42 1.73 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 2.01 5.37 -51.93 -0.28 1.73 16 LS Contribution 308.34 15.07 4.65 4.65 Total: -1.00 -28.31 308.34 -8.01 -36.32 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.23 Total: 4.22 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -3.51 Total: -16.45 kcal Atomic # 7 Polarization: -23.72 SS G_CDS: 0.63 Total: -23.09 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.57 Total: -19.38 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.31 -8.01 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.035 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds