Wall clock time and date at job start Tue Mar 31 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38195 * 120.09247 * 2 1 4 4 F 1.35098 * 119.95267 * 359.95332 * 3 2 1 5 5 C 1.38556 * 120.09726 * 180.23367 * 3 2 1 6 6 C 1.38351 * 120.27958 * 359.48899 * 5 3 2 7 7 C 1.37939 * 120.17882 * 0.51082 * 6 5 3 8 8 C 1.39586 * 120.08645 * 179.97438 * 2 1 3 9 9 C 1.47733 * 120.13836 * 0.04434 * 8 2 1 10 10 O 1.21468 * 119.99997 * 6.20036 * 9 8 2 11 11 O 1.34709 * 119.99897 * 186.19850 * 9 8 2 12 12 C 1.45208 * 116.99941 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.46781 * 30.00192 * 12 11 9 14 14 C 1.50697 * 109.46986 * 149.99716 * 12 11 9 15 15 H 1.08004 * 120.00437 * 359.97438 * 14 12 11 16 16 C 1.37875 * 119.99998 * 179.97438 * 14 12 11 17 17 N 1.31519 * 119.99767 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00267 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47207 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46942 * 120.00286 * 18 16 14 21 21 H 1.48495 * 109.47423 * 240.00378 * 18 16 14 22 22 C 1.52995 * 109.46923 * 269.99820 * 12 11 9 23 23 C 1.53003 * 117.49884 * 128.74630 * 22 12 11 24 24 C 1.53003 * 117.49934 * 60.08953 * 22 12 11 25 25 H 1.09004 * 109.47013 * 96.57072 * 1 2 3 26 26 H 1.08994 * 109.47229 * 216.57246 * 1 2 3 27 27 H 1.08997 * 109.46708 * 336.57560 * 1 2 3 28 28 H 1.08000 * 119.86581 * 179.74173 * 5 3 2 29 29 H 1.08002 * 119.91728 * 180.26340 * 6 5 3 30 30 H 1.07995 * 120.04978 * 179.72943 * 7 6 5 31 31 H 0.97000 * 119.99893 * 179.97438 * 17 16 14 32 32 H 1.08992 * 115.55167 * 274.41589 * 22 12 11 33 33 H 1.09002 * 117.49471 * 0.02562 * 23 22 12 34 34 H 1.08991 * 117.50105 * 145.01843 * 23 22 12 35 35 H 1.09003 * 117.49640 * 214.97910 * 24 22 12 36 36 H 1.09000 * 117.49676 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1999 1.1957 0.0000 4 9 1.5254 2.3662 -0.0010 5 6 3.5855 1.1958 -0.0049 6 6 4.2832 0.0011 0.0009 7 6 3.6032 -1.1990 0.0009 8 6 2.2068 -1.2078 0.0005 9 6 1.4731 -2.4901 0.0001 10 8 0.2639 -2.4979 -0.1143 11 8 2.1453 -3.6506 0.1266 12 6 1.3596 -4.8718 0.1174 13 1 0.4681 -4.7256 -0.4924 14 6 2.1834 -5.9947 -0.4584 15 1 3.1960 -5.8091 -0.7852 16 6 1.6445 -7.2590 -0.5681 17 7 0.4113 -7.4849 -0.1707 18 14 2.6653 -8.6508 -1.2825 19 1 4.0097 -8.1395 -1.6518 20 1 2.8069 -9.7298 -0.2721 21 1 1.9910 -9.1895 -2.4909 22 6 0.9471 -5.2236 1.5480 23 6 -0.5344 -5.5047 1.8072 24 6 0.0974 -4.2040 2.3092 25 1 -0.3633 -0.1176 -1.0210 26 1 -0.3633 -0.8253 0.6123 27 1 -0.3633 0.9430 0.4085 28 1 4.1232 2.1324 -0.0091 29 1 5.3632 0.0081 0.0013 30 1 4.1500 -2.1303 0.0010 31 1 0.0320 -8.3743 -0.2482 32 1 1.6758 -5.7982 2.1196 33 1 -1.2150 -5.4394 0.9583 34 1 -0.7802 -6.2640 2.5495 35 1 0.2670 -4.1081 3.3817 36 1 -0.1673 -3.2824 1.7908 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346707996.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:51 Heat of formation + Delta-G solvation = -95.588105 kcal Electronic energy + Delta-G solvation = -21554.677501 eV Core-core repulsion = 18111.735181 eV Total energy + Delta-G solvation = -3442.942320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.96591 -41.65904 -39.79743 -38.11202 -36.78097 -34.71141 -33.76041 -32.11281 -29.84843 -28.22871 -25.78163 -24.77115 -23.09613 -22.89689 -22.08699 -21.15195 -19.43272 -18.57342 -18.01458 -17.32166 -17.16123 -16.80068 -16.75471 -16.67389 -16.30939 -15.70832 -14.92086 -14.69643 -14.39548 -14.29737 -14.14645 -13.57587 -13.46738 -13.21189 -12.99722 -12.92861 -12.87047 -12.77307 -12.32805 -12.26519 -12.13910 -11.76829 -11.34215 -11.05502 -10.92826 -10.60440 -10.44346 -10.10332 -9.71325 -8.21295 -6.38011 -0.43325 0.08830 1.43235 1.43736 1.54203 1.56247 1.87388 2.42220 2.57725 3.06492 3.15120 3.26239 3.63907 3.69000 3.91648 3.94321 4.09806 4.24199 4.29972 4.43348 4.52123 4.61127 4.65263 4.72276 4.79660 4.93083 5.03063 5.11128 5.14864 5.24237 5.25013 5.29110 5.40534 5.49647 5.57085 5.77312 5.84472 6.12440 6.64607 6.96042 7.31574 8.85272 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025169 B = 0.004880 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.223730 B = 5736.834193 C = 6422.617421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.071 4.071 3 C 0.071 3.929 4 F -0.137 7.137 5 C -0.102 4.102 6 C -0.096 4.096 7 C -0.071 4.071 8 C -0.119 4.119 9 C 0.491 3.509 10 O -0.529 6.529 11 O -0.352 6.352 12 C 0.256 3.744 13 H 0.009 0.991 14 C -0.554 4.554 15 H 0.066 0.934 16 C 0.026 3.974 17 N -0.895 5.895 18 Si 0.974 3.026 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.279 1.279 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.201 4.201 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.178 0.822 29 H 0.183 0.817 30 H 0.146 0.854 31 H 0.267 0.733 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.005 14.949 2.071 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.072 4.072 3 C 0.052 3.948 4 F -0.115 7.115 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.089 4.089 8 C -0.120 4.120 9 C 0.338 3.662 10 O -0.422 6.422 11 O -0.268 6.268 12 C 0.203 3.797 13 H 0.027 0.973 14 C -0.591 4.591 15 H 0.084 0.916 16 C -0.176 4.176 17 N -0.531 5.531 18 Si 0.798 3.202 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.205 1.205 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.238 4.238 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.196 0.804 29 H 0.200 0.800 30 H 0.164 0.836 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.476 14.793 2.060 16.280 hybrid contribution -0.440 -1.022 -0.414 1.187 sum 6.036 13.772 1.646 15.126 Atomic orbital electron populations 1.20957 0.89627 1.03467 1.03473 1.20060 0.97772 0.90969 0.98432 1.17408 0.90975 0.79952 1.06447 1.91482 1.80701 1.45122 1.94217 1.21798 0.90866 1.01824 0.97522 1.21418 1.02457 0.89434 0.98027 1.21798 0.91713 1.01140 0.94294 1.18937 0.94755 0.88884 1.09426 1.21589 0.86078 0.85866 0.72685 1.90691 1.16232 1.88175 1.47066 1.86512 1.43054 1.15583 1.81669 1.19884 0.90395 0.77438 0.91982 0.97344 1.21199 1.00710 0.93471 1.43757 0.91618 1.25698 0.96308 1.00509 0.95074 1.70168 1.14621 1.22766 1.45564 0.85272 0.78786 0.78176 0.77979 1.18886 1.19996 1.20456 1.22422 0.94189 1.01707 0.96723 1.22284 0.95368 0.97147 1.01115 1.23267 1.06363 0.94175 0.99979 0.90859 0.90355 0.90287 0.80432 0.80018 0.83618 0.92418 0.90116 0.91597 0.89288 0.88022 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 8.61 71.24 0.61 -3.02 16 2 C -0.07 -2.12 5.92 -19.55 -0.12 -2.23 16 3 C 0.07 1.70 7.23 22.34 0.16 1.86 16 4 F -0.14 -3.23 16.37 44.97 0.74 -2.49 16 5 C -0.10 -1.73 10.02 22.37 0.22 -1.50 16 6 C -0.10 -1.64 10.03 22.23 0.22 -1.41 16 7 C -0.07 -1.84 9.61 22.54 0.22 -1.62 16 8 C -0.12 -3.93 5.87 -20.10 -0.12 -4.05 16 9 C 0.49 20.97 7.05 70.33 0.50 21.46 16 10 O -0.53 -24.58 10.43 19.94 0.21 -24.37 16 11 O -0.35 -16.74 9.11 -56.19 -0.51 -17.25 16 12 C 0.26 13.72 2.25 29.85 0.07 13.79 16 13 H 0.01 0.53 6.92 -2.39 -0.02 0.52 16 14 C -0.55 -30.88 8.88 25.60 0.23 -30.65 16 15 H 0.07 3.60 7.81 -2.91 -0.02 3.58 16 16 C 0.03 1.41 5.30 84.65 0.45 1.86 16 17 N -0.90 -49.86 11.43 21.45 0.25 -49.61 16 18 Si 0.97 42.35 29.54 68.60 2.03 44.37 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 22 C -0.13 -6.50 4.47 -10.79 -0.05 -6.55 16 23 C -0.12 -5.67 9.04 30.62 0.28 -5.39 16 24 C -0.20 -8.59 9.80 30.62 0.30 -8.29 16 25 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 26 H 0.08 2.77 5.86 -2.39 -0.01 2.75 16 27 H 0.08 2.03 7.46 -2.39 -0.02 2.01 16 28 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 29 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.15 3.81 7.63 -2.91 -0.02 3.78 16 31 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 32 H 0.08 4.09 8.11 -2.39 -0.02 4.07 16 33 H 0.07 3.35 8.05 -2.39 -0.02 3.33 16 34 H 0.09 3.82 8.14 -2.39 -0.02 3.80 16 35 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 36 H 0.09 3.82 5.37 -2.39 -0.01 3.81 16 Total: -1.00 -64.31 308.34 6.78 -57.54 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.10 Total: 17.57 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 2.97 Total: -25.75 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.25 Total: -49.61 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.30 Total: -41.62 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.74 Total: -2.49 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.31 6.78 -57.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346707996.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.051 kcal (2) G-P(sol) polarization free energy of solvation -64.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds