Wall clock time and date at job start Mon Mar 30 2020 23:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86799 * 120.00406 * 2 1 4 4 H 1.48496 * 109.47335 * 240.00640 * 3 2 1 5 5 H 1.48505 * 109.46702 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47280 * 120.00101 * 3 2 1 7 7 C 1.40229 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00049 * 197.86106 * 7 2 1 9 9 C 1.41113 * 119.99975 * 17.85687 * 7 2 1 10 10 C 1.40886 * 120.09999 * 204.63468 * 9 7 2 11 11 C 1.36322 * 119.89093 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.10492 * 0.02562 * 11 10 9 13 13 C 1.47641 * 119.89718 * 179.97438 * 12 11 10 14 14 O 1.21592 * 119.99573 * 0.02562 * 13 12 11 15 15 N 1.34769 * 119.99972 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99886 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47022 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47154 * 60.00158 * 17 16 15 19 19 O 1.42893 * 109.47261 * 299.99768 * 17 16 15 20 20 C 1.50704 * 109.46944 * 180.02562 * 17 16 15 21 21 N 1.34776 * 119.99846 * 294.99836 * 20 17 16 22 22 O 1.21279 * 120.00335 * 114.99996 * 20 17 16 23 23 C 1.40016 * 120.20648 * 0.25394 * 12 11 10 24 24 C 1.36319 * 120.10940 * 359.48174 * 23 12 11 25 25 H 0.96994 * 119.99715 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.05731 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.94809 * 179.97438 * 11 10 9 28 28 H 0.96998 * 120.00498 * 0.02562 * 15 13 12 29 29 H 1.08997 * 109.47065 * 59.99629 * 16 15 13 30 30 H 1.09000 * 109.47229 * 299.99826 * 16 15 13 31 31 H 0.96705 * 114.00085 * 300.00428 * 19 17 16 32 32 H 0.97003 * 120.00267 * 0.02562 * 21 20 17 33 33 H 0.97003 * 120.00140 * 179.97438 * 21 20 17 34 34 H 1.07998 * 119.94265 * 179.74503 * 23 12 11 35 35 H 1.07997 * 120.05552 * 180.23699 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0944 1.6963 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0486 -1.2371 0.2863 9 6 1.3530 -2.4069 -0.3758 10 6 1.8267 -3.6495 0.0895 11 6 1.1914 -4.7988 -0.2762 12 6 0.0702 -4.7458 -1.1131 13 6 -0.6140 -5.9935 -1.5066 14 8 -0.2039 -7.0649 -1.1036 15 7 -1.6931 -5.9449 -2.3125 16 6 -2.3724 -7.1830 -2.7026 17 6 -3.5560 -6.8502 -3.6132 18 1 -3.1955 -6.3372 -4.5048 19 8 -4.4715 -6.0045 -2.9144 20 6 -4.2551 -8.1237 -4.0139 21 7 -3.6146 -9.0333 -4.7748 22 8 -5.3940 -8.3301 -3.6518 23 6 -0.4007 -3.5137 -1.5827 24 6 0.2248 -2.3586 -1.2181 25 1 -0.4849 0.8400 0.0004 26 1 2.6923 -3.6915 0.7341 27 1 1.5540 -5.7519 0.0796 28 1 -2.0201 -5.0903 -2.6343 29 1 -2.7324 -7.6963 -1.8110 30 1 -1.6742 -7.8280 -3.2361 31 1 -4.8333 -6.3976 -2.1083 32 1 -2.7036 -8.8684 -5.0642 33 1 -4.0644 -9.8532 -5.0325 34 1 -1.2634 -3.4780 -2.2313 35 1 -0.1415 -1.4084 -1.5777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347748508.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:06 Heat of formation + Delta-G solvation = -118.408462 kcal Electronic energy + Delta-G solvation = -20524.401303 eV Core-core repulsion = 17100.389379 eV Total energy + Delta-G solvation = -3424.011923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.27648 -39.05264 -37.27788 -36.64827 -34.39641 -33.90251 -33.68045 -30.59170 -29.48963 -29.14038 -26.08823 -24.14190 -21.82379 -21.18996 -20.91210 -19.69119 -18.34983 -17.56394 -17.39279 -17.27952 -15.93559 -15.76968 -15.58995 -15.13068 -14.70969 -14.11005 -13.97744 -13.90697 -13.72314 -13.20332 -12.75736 -12.46068 -12.16696 -12.04300 -11.93670 -11.39236 -11.28394 -11.06311 -11.00195 -10.67240 -10.11058 -10.07585 -10.02722 -9.58311 -9.37112 -9.05122 -8.76093 -7.74858 -7.57710 -7.05960 -4.63154 2.17043 2.19321 2.90736 2.93180 2.96833 3.01420 3.03100 3.61058 3.71729 3.81144 4.17084 4.41443 4.52058 4.59074 4.73027 5.40336 5.52519 5.58336 6.00258 6.04580 6.28670 6.38317 6.73680 6.77297 6.80142 6.87109 7.00877 7.10585 7.29400 7.40588 7.61302 7.75507 7.83170 7.84235 8.04304 8.15091 8.37182 8.60285 8.72524 8.97825 9.85921 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031798 B = 0.003363 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.349510 B = 8323.192053 C = 8977.376289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.240 4.240 11 C -0.021 4.021 12 C -0.287 4.287 13 C 0.573 3.427 14 O -0.577 6.577 15 N -0.736 5.736 16 C 0.099 3.901 17 C 0.080 3.920 18 H 0.132 0.868 19 O -0.531 6.531 20 C 0.496 3.504 21 N -0.850 5.850 22 O -0.534 6.534 23 C -0.061 4.061 24 C -0.178 4.178 25 H 0.288 0.712 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.404 0.596 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.388 0.612 32 H 0.405 0.595 33 H 0.403 0.597 34 H 0.090 0.910 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 -7.232 -8.451 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.040 4.040 12 C -0.291 4.291 13 C 0.368 3.632 14 O -0.459 6.459 15 N -0.391 5.391 16 C -0.027 4.027 17 C 0.017 3.983 18 H 0.150 0.850 19 O -0.336 6.336 20 C 0.279 3.721 21 N -0.415 5.415 22 O -0.410 6.410 23 C -0.080 4.080 24 C -0.198 4.198 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.240 0.760 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.237 0.763 32 H 0.234 0.766 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.713 -7.365 -8.294 12.052 hybrid contribution 0.248 0.445 0.008 0.509 sum -4.465 -6.921 -8.286 11.683 Atomic orbital electron populations 1.69732 1.07914 1.30256 1.31340 1.26109 0.94824 1.01911 0.91906 0.86251 0.80204 0.79413 0.80350 1.18458 1.20023 1.18657 1.19841 0.98428 0.91228 1.37441 0.89709 1.17787 0.90363 0.92154 0.87104 1.20714 1.04647 0.92639 1.07917 1.20352 0.92883 0.97134 0.93637 1.18838 1.04660 0.90888 1.14759 1.18619 0.78458 0.89745 0.76356 1.90640 1.66671 1.31713 1.56858 1.45760 1.31635 1.08538 1.53170 1.21712 0.93120 0.89140 0.98681 1.22124 0.89014 0.89839 0.97352 0.85046 1.86612 1.61959 1.42343 1.42724 1.21426 0.86978 0.85747 0.77940 1.43916 1.19233 1.23101 1.55278 1.90776 1.17968 1.77694 1.54536 1.20489 0.97297 0.92544 0.97712 1.20978 0.99921 0.96945 1.01920 0.90089 0.88378 0.88139 0.75956 0.91145 0.90685 0.76293 0.76627 0.76625 0.89183 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.22 10.96 55.56 0.61 -17.61 16 2 C 0.07 1.70 5.14 -17.31 -0.09 1.62 16 3 Si 0.91 17.01 29.60 -169.99 -5.03 11.98 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 7 C -0.44 -10.82 9.04 -37.74 -0.34 -11.16 16 8 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 9 C 0.13 3.24 5.57 -106.81 -0.60 2.64 16 10 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 11 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 12 C -0.29 -6.38 5.89 -104.73 -0.62 -6.99 16 13 C 0.57 11.62 7.76 -12.43 -0.10 11.52 16 14 O -0.58 -13.11 16.32 5.28 0.09 -13.02 16 15 N -0.74 -11.33 5.40 -61.31 -0.33 -11.66 16 16 C 0.10 1.19 5.29 -4.04 -0.02 1.17 16 17 C 0.08 0.80 3.47 -27.88 -0.10 0.70 16 18 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 19 O -0.53 -6.34 12.74 -55.10 -0.70 -7.04 16 20 C 0.50 5.09 7.44 -10.98 -0.08 5.01 16 21 N -0.85 -5.36 8.84 31.22 0.28 -5.09 16 22 O -0.53 -7.69 17.16 -14.31 -0.25 -7.93 16 23 C -0.06 -1.33 9.47 -39.61 -0.38 -1.70 16 24 C -0.18 -4.29 8.64 -39.27 -0.34 -4.63 16 25 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 26 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 27 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 28 H 0.40 5.80 6.35 -40.82 -0.26 5.54 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 31 H 0.39 4.02 8.79 45.56 0.40 4.42 16 32 H 0.40 1.57 8.61 -40.82 -0.35 1.22 16 33 H 0.40 2.12 8.93 -40.82 -0.36 1.76 16 34 H 0.09 1.66 6.37 -52.49 -0.33 1.32 16 35 H 0.12 2.93 6.16 -52.49 -0.32 2.61 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -31.62 310.59 -6.93 -38.55 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -2.86 Total: 15.92 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.41 Total: -8.78 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.55 Total: -34.35 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.86 Total: -28.00 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.62 -6.93 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347748508.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.855 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds