Wall clock time and date at job start Mon Mar 30 2020 23:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48499 * 109.47420 * 240.00047 * 3 2 1 5 5 H 1.48507 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47023 * 120.00130 * 3 2 1 7 7 C 1.40231 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99692 * 197.86565 * 7 2 1 9 9 C 1.41101 * 119.99845 * 17.85760 * 7 2 1 10 10 C 1.40887 * 120.10522 * 204.63258 * 9 7 2 11 11 C 1.36313 * 119.89579 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10719 * 0.02562 * 11 10 9 13 13 C 1.47639 * 119.89646 * 179.97438 * 12 11 10 14 14 O 1.21582 * 119.99904 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99879 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99800 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46821 * 179.97438 * 16 15 13 18 18 H 1.08994 * 109.47468 * 304.99680 * 17 16 15 19 19 O 1.42900 * 109.47210 * 64.99872 * 17 16 15 20 20 C 1.50704 * 109.46920 * 184.99747 * 17 16 15 21 21 N 1.34772 * 119.99870 * 65.27623 * 20 17 16 22 22 O 1.21279 * 119.99819 * 245.00112 * 20 17 16 23 23 C 1.40013 * 120.20336 * 0.25736 * 12 11 10 24 24 C 1.36312 * 120.10813 * 359.47481 * 23 12 11 25 25 H 0.96997 * 119.99764 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.05220 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.94856 * 179.97438 * 11 10 9 28 28 H 0.97005 * 119.99834 * 359.97438 * 15 13 12 29 29 H 1.09002 * 109.47473 * 59.99964 * 16 15 13 30 30 H 1.09000 * 109.47167 * 299.99881 * 16 15 13 31 31 H 0.96705 * 113.99651 * 59.99836 * 19 17 16 32 32 H 0.97002 * 120.00235 * 179.72341 * 21 20 17 33 33 H 0.97004 * 120.00023 * 359.72739 * 21 20 17 34 34 H 1.08007 * 119.94164 * 179.75015 * 23 12 11 35 35 H 1.08008 * 120.04916 * 180.23281 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0486 -1.2371 0.2864 9 6 1.3530 -2.4068 -0.3758 10 6 1.8267 -3.6495 0.0894 11 6 1.1914 -4.7987 -0.2763 12 6 0.0701 -4.7457 -1.1132 13 6 -0.6141 -5.9934 -1.5067 14 8 -0.2040 -7.0647 -1.1038 15 7 -1.6933 -5.9448 -2.3126 16 6 -2.3725 -7.1829 -2.7027 17 6 -3.5569 -6.8499 -3.6122 18 1 -4.2099 -6.1352 -3.1115 19 8 -3.0758 -6.2821 -4.8321 20 6 -4.3280 -8.1091 -3.9139 21 7 -4.9678 -8.7612 -2.9231 22 8 -4.3770 -8.5328 -5.0493 23 6 -0.4007 -3.5136 -1.5827 24 6 0.2248 -2.3586 -1.2181 25 1 -0.4849 0.8400 0.0004 26 1 2.6917 -3.6914 0.7346 27 1 1.5540 -5.7519 0.0795 28 1 -2.0207 -5.0900 -2.6338 29 1 -2.7326 -7.6962 -1.8111 30 1 -1.6743 -7.8278 -3.2362 31 1 -2.4872 -6.8644 -5.3317 32 1 -5.4675 -9.5695 -3.1179 33 1 -4.9287 -8.4223 -2.0150 34 1 -1.2636 -3.4779 -2.2314 35 1 -0.1415 -1.4084 -1.5779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347748509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:09 Heat of formation + Delta-G solvation = -118.444618 kcal Electronic energy + Delta-G solvation = -20512.473066 eV Core-core repulsion = 17088.459575 eV Total energy + Delta-G solvation = -3424.013491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.27776 -39.05804 -37.28085 -36.65527 -34.41315 -33.90888 -33.68846 -30.59378 -29.49382 -29.13233 -26.09194 -24.15223 -21.83569 -21.19576 -20.91769 -19.69602 -18.35851 -17.56962 -17.38709 -17.28324 -15.92909 -15.78054 -15.58754 -15.11711 -14.73184 -14.11269 -13.98603 -13.90215 -13.73436 -13.20903 -12.76384 -12.45202 -12.16626 -12.08300 -11.93256 -11.39260 -11.28662 -11.07582 -11.00059 -10.67814 -10.11679 -10.07381 -10.03325 -9.58738 -9.37570 -9.05373 -8.76647 -7.75394 -7.58210 -7.06848 -4.63677 2.16923 2.18783 2.90379 2.92812 2.96822 3.01026 3.02547 3.62479 3.71363 3.80617 4.14010 4.41118 4.52019 4.59109 4.73365 5.39808 5.52340 5.58085 5.99605 6.03841 6.28129 6.38457 6.73147 6.76731 6.79525 6.87233 7.00383 7.10050 7.28282 7.40106 7.60726 7.74951 7.82756 7.84167 8.03770 8.14198 8.36672 8.59785 8.72039 8.97307 9.85058 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.003339 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.057844 B = 8384.057252 C = 8957.911944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.240 4.240 11 C -0.021 4.021 12 C -0.287 4.287 13 C 0.573 3.427 14 O -0.576 6.576 15 N -0.737 5.737 16 C 0.100 3.900 17 C 0.080 3.920 18 H 0.133 0.867 19 O -0.532 6.532 20 C 0.496 3.504 21 N -0.850 5.850 22 O -0.535 6.535 23 C -0.061 4.061 24 C -0.178 4.178 25 H 0.288 0.712 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.403 0.597 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.387 0.613 32 H 0.403 0.597 33 H 0.405 0.595 34 H 0.090 0.910 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -6.478 -3.124 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.126 3.874 10 C -0.259 4.259 11 C -0.040 4.040 12 C -0.291 4.291 13 C 0.368 3.632 14 O -0.458 6.458 15 N -0.391 5.391 16 C -0.026 4.026 17 C 0.017 3.983 18 H 0.150 0.850 19 O -0.337 6.337 20 C 0.279 3.721 21 N -0.415 5.415 22 O -0.410 6.410 23 C -0.080 4.080 24 C -0.198 4.198 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.240 0.760 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.236 0.764 32 H 0.234 0.766 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.231 -6.683 -3.447 11.148 hybrid contribution 0.122 0.478 0.180 0.525 sum -8.109 -6.205 -3.267 10.720 Atomic orbital electron populations 1.69729 1.07924 1.30228 1.31447 1.26106 0.94826 1.01913 0.91866 0.86251 0.80214 0.79387 0.80372 1.18437 1.20024 1.18658 1.19840 0.98434 0.91226 1.37417 0.89700 1.17785 0.90359 0.92154 0.87102 1.20714 1.04635 0.92643 1.07919 1.20353 0.92870 0.97134 0.93650 1.18838 1.04681 0.90887 1.14734 1.18618 0.78427 0.89744 0.76383 1.90638 1.66455 1.31708 1.57041 1.45779 1.32062 1.08472 1.52827 1.21727 0.93539 0.89142 0.98201 1.22128 0.95202 0.93739 0.87273 0.84989 1.86617 1.68418 1.44603 1.34021 1.21413 0.79466 0.85868 0.85317 1.43917 1.55035 1.30812 1.11744 1.90774 1.61721 1.67348 1.21197 1.20484 0.97421 0.92543 0.97601 1.20978 0.99927 0.96955 1.01893 0.90118 0.88374 0.88132 0.76030 0.90721 0.91062 0.76368 0.76611 0.76587 0.89200 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.09 10.96 55.56 0.61 -17.48 16 2 C 0.07 1.70 5.14 -17.31 -0.09 1.62 16 3 Si 0.91 16.98 29.60 -169.99 -5.03 11.95 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.80 9.04 -37.75 -0.34 -11.14 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.13 3.23 5.57 -106.81 -0.60 2.64 16 10 C -0.24 -5.69 9.73 -39.27 -0.38 -6.07 16 11 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 12 C -0.29 -6.36 5.89 -104.73 -0.62 -6.98 16 13 C 0.57 11.59 7.76 -12.42 -0.10 11.49 16 14 O -0.58 -13.09 16.32 5.29 0.09 -13.00 16 15 N -0.74 -11.29 5.45 -61.31 -0.33 -11.62 16 16 C 0.10 1.19 5.28 -4.04 -0.02 1.17 16 17 C 0.08 0.80 3.41 -27.88 -0.10 0.70 16 18 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 19 O -0.53 -6.24 12.94 -55.09 -0.71 -6.96 16 20 C 0.50 5.10 7.43 -10.99 -0.08 5.02 16 21 N -0.85 -5.47 8.78 31.22 0.27 -5.20 16 22 O -0.53 -7.65 17.16 -14.30 -0.25 -7.90 16 23 C -0.06 -1.32 9.47 -39.61 -0.38 -1.70 16 24 C -0.18 -4.28 8.63 -39.28 -0.34 -4.62 16 25 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 26 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 27 H 0.10 2.24 7.63 -52.48 -0.40 1.84 16 28 H 0.40 5.73 6.47 -40.82 -0.26 5.47 16 29 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.39 3.86 8.79 45.56 0.40 4.26 16 32 H 0.40 2.16 8.93 -40.82 -0.36 1.80 16 33 H 0.41 1.67 8.54 -40.82 -0.35 1.33 16 34 H 0.09 1.64 6.37 -52.48 -0.33 1.31 16 35 H 0.12 2.93 6.16 -52.48 -0.32 2.60 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -31.48 310.65 -6.94 -38.42 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -2.86 Total: 15.83 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -3.41 Total: -8.72 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.55 Total: -34.30 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.87 Total: -27.86 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.48 -6.94 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347748509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.024 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds