Wall clock time and date at job start Mon Mar 30 2020 23:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86800 * 120.00206 * 2 1 4 4 H 1.48499 * 109.47420 * 240.00047 * 3 2 1 5 5 H 1.48507 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47023 * 120.00130 * 3 2 1 7 7 C 1.40231 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99692 * 197.86565 * 7 2 1 9 9 C 1.41101 * 119.99845 * 17.85760 * 7 2 1 10 10 C 1.40887 * 120.10522 * 204.63258 * 9 7 2 11 11 C 1.36313 * 119.89579 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10719 * 0.02562 * 11 10 9 13 13 C 1.47639 * 119.89646 * 179.97438 * 12 11 10 14 14 O 1.21582 * 119.99904 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99879 * 180.02562 * 13 12 11 16 16 C 1.46499 * 119.99800 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46821 * 179.97438 * 16 15 13 18 18 H 1.08994 * 109.47468 * 304.99680 * 17 16 15 19 19 O 1.42900 * 109.47210 * 64.99872 * 17 16 15 20 20 C 1.50704 * 109.46920 * 184.99747 * 17 16 15 21 21 N 1.34772 * 119.99870 * 65.27623 * 20 17 16 22 22 O 1.21279 * 119.99819 * 245.00112 * 20 17 16 23 23 C 1.40013 * 120.20336 * 0.25736 * 12 11 10 24 24 C 1.36312 * 120.10813 * 359.47481 * 23 12 11 25 25 H 0.96997 * 119.99764 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.05220 * 0.02562 * 10 9 7 27 27 H 1.08003 * 119.94856 * 179.97438 * 11 10 9 28 28 H 0.97005 * 119.99834 * 359.97438 * 15 13 12 29 29 H 1.09002 * 109.47473 * 59.99964 * 16 15 13 30 30 H 1.09000 * 109.47167 * 299.99881 * 16 15 13 31 31 H 0.96705 * 113.99651 * 59.99836 * 19 17 16 32 32 H 0.97002 * 120.00235 * 179.72341 * 21 20 17 33 33 H 0.97004 * 120.00023 * 359.72739 * 21 20 17 34 34 H 1.08007 * 119.94164 * 179.75015 * 23 12 11 35 35 H 1.08008 * 120.04916 * 180.23281 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0486 -1.2371 0.2864 9 6 1.3530 -2.4068 -0.3758 10 6 1.8267 -3.6495 0.0894 11 6 1.1914 -4.7987 -0.2763 12 6 0.0701 -4.7457 -1.1132 13 6 -0.6141 -5.9934 -1.5067 14 8 -0.2040 -7.0647 -1.1038 15 7 -1.6933 -5.9448 -2.3126 16 6 -2.3725 -7.1829 -2.7027 17 6 -3.5569 -6.8499 -3.6122 18 1 -4.2099 -6.1352 -3.1115 19 8 -3.0758 -6.2821 -4.8321 20 6 -4.3280 -8.1091 -3.9139 21 7 -4.9678 -8.7612 -2.9231 22 8 -4.3770 -8.5328 -5.0493 23 6 -0.4007 -3.5136 -1.5827 24 6 0.2248 -2.3586 -1.2181 25 1 -0.4849 0.8400 0.0004 26 1 2.6917 -3.6914 0.7346 27 1 1.5540 -5.7519 0.0795 28 1 -2.0207 -5.0900 -2.6338 29 1 -2.7326 -7.6962 -1.8111 30 1 -1.6743 -7.8278 -3.2362 31 1 -2.4872 -6.8644 -5.3317 32 1 -5.4675 -9.5695 -3.1179 33 1 -4.9287 -8.4223 -2.0150 34 1 -1.2636 -3.4779 -2.2314 35 1 -0.1415 -1.4084 -1.5779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347748509.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:08 Heat of formation + Delta-G solvation = -143.952401 kcal Electronic energy + Delta-G solvation = -20513.579166 eV Core-core repulsion = 17088.459575 eV Total energy + Delta-G solvation = -3425.119592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24215 -40.52880 -38.91753 -37.70891 -35.65472 -35.47641 -34.69798 -32.20923 -31.28291 -30.32264 -27.72742 -25.32794 -23.43733 -22.73067 -22.03486 -21.15942 -19.35486 -19.17025 -18.72087 -18.15360 -17.26041 -16.96869 -16.77399 -16.43755 -15.87002 -15.72318 -15.25835 -15.09650 -15.06570 -14.77564 -14.40251 -13.86515 -13.68955 -13.55779 -13.16928 -12.99214 -12.84116 -12.62082 -12.34873 -11.94880 -11.77731 -11.34667 -11.11846 -11.02415 -10.76659 -10.62154 -10.12688 -9.55142 -9.39044 -8.78122 -6.46853 0.45853 1.17547 1.34805 1.40112 1.45610 1.53116 2.12207 2.15044 2.19076 2.59128 2.79823 3.26669 3.50866 3.71070 3.88904 3.92129 4.26861 4.34764 4.46646 4.55829 4.67233 4.94912 5.04445 5.17870 5.31896 5.47313 5.60717 5.79114 5.84070 5.95875 6.01346 6.23901 6.24876 6.50757 6.55838 6.67612 6.78871 6.90816 7.17746 7.42022 8.16819 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031557 B = 0.003339 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.057844 B = 8384.057252 C = 8957.911944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.475 4.475 8 H 0.085 0.915 9 C 0.102 3.898 10 C -0.254 4.254 11 C -0.032 4.032 12 C -0.294 4.294 13 C 0.575 3.425 14 O -0.603 6.603 15 N -0.718 5.718 16 C 0.099 3.901 17 C 0.091 3.909 18 H 0.156 0.844 19 O -0.547 6.547 20 C 0.498 3.502 21 N -0.828 5.828 22 O -0.579 6.579 23 C -0.052 4.052 24 C -0.199 4.199 25 H 0.297 0.703 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.411 0.589 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.392 0.608 32 H 0.411 0.589 33 H 0.419 0.581 34 H 0.125 0.875 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.255 -6.148 -3.290 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.183 1.183 7 C -0.502 4.502 8 H 0.103 0.897 9 C 0.099 3.901 10 C -0.274 4.274 11 C -0.051 4.051 12 C -0.299 4.299 13 C 0.368 3.632 14 O -0.488 6.488 15 N -0.371 5.371 16 C -0.025 4.025 17 C 0.028 3.972 18 H 0.174 0.826 19 O -0.353 6.353 20 C 0.281 3.719 21 N -0.394 5.394 22 O -0.459 6.459 23 C -0.071 4.071 24 C -0.219 4.219 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.249 0.751 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.244 0.756 33 H 0.251 0.749 34 H 0.142 0.858 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.506 -6.371 -3.591 11.993 hybrid contribution 0.417 0.250 0.245 0.544 sum -9.089 -6.121 -3.346 11.457 Atomic orbital electron populations 1.69748 1.09158 1.31678 1.31381 1.26896 0.95554 1.04725 0.90852 0.85178 0.78883 0.75104 0.80233 1.18349 1.18770 1.18327 1.20101 0.98779 0.92314 1.39040 0.89729 1.18127 0.91262 0.92838 0.87879 1.20856 1.05219 0.92803 1.08508 1.20513 0.93477 0.97005 0.94110 1.19161 1.04433 0.92210 1.14066 1.18328 0.79391 0.88451 0.77008 1.90626 1.67549 1.32249 1.58356 1.45573 1.30465 1.10207 1.50886 1.21905 0.93906 0.87481 0.99244 1.22136 0.94457 0.94270 0.86353 0.82646 1.86590 1.68698 1.45348 1.34650 1.21394 0.79535 0.85807 0.85141 1.43770 1.53465 1.30400 1.11751 1.90765 1.63633 1.68407 1.23079 1.20739 0.97799 0.91475 0.97077 1.21016 1.00565 0.97510 1.02771 0.89158 0.87892 0.87820 0.75116 0.89080 0.91828 0.75731 0.75650 0.74902 0.85762 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.36 10.96 21.87 0.24 -37.12 16 2 C 0.04 1.78 5.14 85.35 0.44 2.22 16 3 Si 0.99 34.32 29.60 68.60 2.03 36.35 16 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.26 -8.58 7.11 99.48 0.71 -7.88 16 6 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.48 -23.70 9.04 23.46 0.21 -23.49 16 8 H 0.08 4.05 7.91 -2.91 -0.02 4.02 16 9 C 0.10 5.22 5.57 -21.28 -0.12 5.10 16 10 C -0.25 -12.38 9.73 22.47 0.22 -12.16 16 11 C -0.03 -1.48 9.52 22.25 0.21 -1.27 16 12 C -0.29 -12.85 5.89 -19.93 -0.12 -12.97 16 13 C 0.57 22.39 7.76 86.73 0.67 23.07 16 14 O -0.60 -26.75 16.32 -3.97 -0.06 -26.81 16 15 N -0.72 -20.27 5.45 -466.16 -2.54 -22.81 16 16 C 0.10 2.13 5.28 86.38 0.46 2.58 16 17 C 0.09 1.57 3.41 29.85 0.10 1.67 16 18 H 0.16 1.97 8.14 -2.39 -0.02 1.95 16 19 O -0.55 -11.78 12.94 -129.99 -1.68 -13.46 16 20 C 0.50 9.15 7.43 87.66 0.65 9.81 16 21 N -0.83 -8.37 8.78 -173.54 -1.52 -9.89 16 22 O -0.58 -15.90 17.16 15.96 0.27 -15.63 16 23 C -0.05 -2.20 9.47 22.25 0.21 -1.98 16 24 C -0.20 -9.64 8.63 22.47 0.19 -9.44 16 25 H 0.30 12.40 8.29 -92.71 -0.77 11.64 16 26 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 27 H 0.10 4.67 7.63 -2.91 -0.02 4.65 16 28 H 0.41 10.46 6.47 -92.70 -0.60 9.86 16 29 H 0.09 1.72 7.78 -2.39 -0.02 1.70 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.39 7.37 8.79 -74.05 -0.65 6.72 16 32 H 0.41 3.37 8.93 -92.71 -0.83 2.54 16 33 H 0.42 2.03 8.54 -92.71 -0.79 1.24 16 34 H 0.12 4.25 6.37 -2.91 -0.02 4.23 16 35 H 0.11 5.55 6.16 -2.91 -0.02 5.53 16 Total: -1.00 -68.35 310.65 -1.82 -70.17 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -1.68 Total: 36.06 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 3.13 Total: -16.86 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -3.83 Total: -69.82 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -1.47 Total: -55.90 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Total: -68.35 -1.82 -70.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347748509.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.786 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds