Wall clock time and date at job start Mon Mar 30 2020 23:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86796 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47153 * 270.00466 * 3 2 1 5 5 H 1.48504 * 109.46933 * 30.00009 * 3 2 1 6 6 H 1.48502 * 109.47277 * 149.99951 * 3 2 1 7 7 C 1.38949 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00081 * 359.97438 * 7 2 1 9 9 N 1.37103 * 120.00040 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99914 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00172 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00181 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47429 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00159 * 179.97438 * 13 12 10 15 15 O 1.21555 * 119.99766 * 359.97438 * 14 13 12 16 16 C 1.47842 * 120.00091 * 179.97438 * 14 13 12 17 17 C 1.39577 * 120.14253 * 179.97438 * 16 14 13 18 18 C 1.37961 * 119.85136 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.14408 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.85322 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47152 * 90.00527 * 20 19 18 22 22 C 1.38360 * 120.29536 * 0.23424 * 19 18 17 23 23 C 1.37958 * 120.14241 * 359.48587 * 22 19 18 24 24 H 0.97000 * 119.99949 * 359.97438 * 1 2 3 25 25 H 0.96993 * 120.00002 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.47124 * 59.99164 * 12 10 9 27 27 H 1.09002 * 109.46143 * 299.99546 * 12 10 9 28 28 H 0.97005 * 119.99327 * 359.97438 * 13 12 10 29 29 H 1.07994 * 120.07744 * 0.02562 * 17 16 14 30 30 H 1.08001 * 119.92867 * 180.02562 * 18 17 16 31 31 H 1.08997 * 109.47198 * 330.00204 * 20 19 18 32 32 H 1.09008 * 109.47393 * 209.99921 * 20 19 18 33 33 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.93147 * 179.74152 * 22 19 18 35 35 H 1.08003 * 120.07281 * 180.24846 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4472 -3.4210 -0.0021 12 6 5.5607 -2.3706 -0.0021 13 7 6.0490 -3.7518 -0.0027 14 6 7.3741 -3.9981 -0.0034 15 8 8.1640 -3.0742 -0.0039 16 6 7.8669 -5.3920 -0.0034 17 6 9.2385 -5.6505 -0.0046 18 6 9.6918 -6.9535 -0.0052 19 6 8.7900 -8.0028 -0.0051 20 6 9.2923 -9.4236 -0.0063 21 8 9.4520 -9.8735 1.3406 22 6 7.4290 -7.7535 -0.0094 23 6 6.9626 -6.4552 -0.0030 24 1 -0.4850 0.8401 0.0004 25 1 3.8648 -0.3633 -0.0014 26 1 5.9241 -1.8575 0.8882 27 1 5.9239 -1.8560 -0.8917 28 1 5.4186 -4.4890 -0.0027 29 1 9.9435 -4.8323 -0.0051 30 1 10.7528 -7.1549 -0.0057 31 1 10.2521 -9.4692 -0.5209 32 1 8.5739 -10.0626 -0.5200 33 1 9.7737 -10.7823 1.4162 34 1 6.7303 -8.5770 -0.0135 35 1 5.9000 -6.2619 -0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347783530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:36 Heat of formation + Delta-G solvation = -92.888359 kcal Electronic energy + Delta-G solvation = -20108.420423 eV Core-core repulsion = 16685.515134 eV Total energy + Delta-G solvation = -3422.905289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30959 -38.99970 -38.18513 -36.80594 -34.62379 -33.84447 -32.14510 -31.80420 -31.17996 -28.28565 -26.42934 -24.36909 -22.86074 -22.31821 -20.24482 -19.70772 -18.85428 -17.85526 -17.83655 -16.38477 -15.94826 -15.58335 -15.41825 -15.17380 -15.06684 -14.65824 -14.08128 -14.02484 -13.84741 -13.59585 -13.23076 -13.00620 -12.63553 -12.50281 -12.20540 -12.07445 -11.55431 -11.30919 -11.25273 -10.65883 -10.48602 -10.08662 -9.94158 -9.72182 -9.19944 -9.16562 -8.87665 -8.80840 -8.32889 -6.42771 -3.95501 0.60871 1.18153 2.76551 2.98301 3.02961 3.10800 3.20965 3.52246 3.66032 4.01911 4.08362 4.46297 4.51564 4.60240 4.69599 4.83106 4.93649 4.98295 5.12025 5.17797 5.38236 5.56312 5.64627 5.75016 5.77853 5.78444 6.07325 6.18408 6.26239 6.47955 6.65278 7.19472 7.41680 7.66474 7.97696 8.27624 8.43153 8.79318 9.27402 9.60409 10.69312 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040664 B = 0.002972 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.402942 B = 9418.804543 C =10012.993353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.311 4.311 8 H 0.122 0.878 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.580 6.580 12 C 0.106 3.894 13 N -0.702 5.702 14 C 0.555 3.445 15 O -0.545 6.545 16 C -0.122 4.122 17 C -0.063 4.063 18 C -0.110 4.110 19 C -0.075 4.075 20 C 0.115 3.885 21 O -0.566 6.566 22 C -0.106 4.106 23 C -0.086 4.086 24 H 0.276 0.724 25 H 0.375 0.625 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.412 0.588 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.381 0.619 34 H 0.130 0.870 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.926 -14.653 -0.993 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.139 0.861 9 N -0.212 5.212 10 C 0.223 3.777 11 O -0.464 6.464 12 C -0.022 4.022 13 N -0.356 5.356 14 C 0.342 3.658 15 O -0.424 6.424 16 C -0.125 4.125 17 C -0.082 4.082 18 C -0.128 4.128 19 C -0.075 4.075 20 C 0.038 3.962 21 O -0.372 6.372 22 C -0.124 4.124 23 C -0.104 4.104 24 H 0.087 0.913 25 H 0.208 0.792 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.251 0.749 29 H 0.156 0.844 30 H 0.147 0.853 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.148 0.852 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.589 -13.934 -0.871 23.248 hybrid contribution 0.335 0.544 -0.136 0.653 sum 18.924 -13.390 -1.007 23.204 Atomic orbital electron populations 1.69614 1.05722 1.27856 1.48030 1.25069 0.95542 0.98197 0.97085 0.86668 0.79929 0.83733 0.79154 1.19371 1.19949 1.19203 1.19445 0.78921 0.96822 1.48724 0.86051 1.42118 1.07726 1.06124 1.65280 1.19612 0.87991 0.84923 0.85148 1.90537 1.69182 1.30900 1.55781 1.21012 0.93877 0.83753 1.03561 1.45625 1.06848 1.09397 1.73732 1.18223 0.82193 0.88602 0.76749 1.90752 1.55493 1.45557 1.50647 1.20011 0.94578 0.92815 1.05093 1.21259 0.94439 0.97074 0.95458 1.21002 0.99687 0.91821 1.00279 1.19813 0.93716 0.94438 0.99577 1.21020 0.99558 0.91683 0.83982 1.86587 1.89820 1.34660 1.26152 1.21000 0.94842 0.96814 0.99750 1.21462 0.99923 0.92161 0.96877 0.91349 0.79206 0.89483 0.89469 0.74871 0.84380 0.85336 0.92528 0.92437 0.77210 0.85200 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.87 13.96 55.50 0.77 -24.09 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.95 27.73 -169.99 -4.71 14.23 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 7 C -0.31 -8.53 10.16 -14.93 -0.15 -8.69 16 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 9 N -0.58 -13.34 5.09 -10.96 -0.06 -13.39 16 10 C 0.44 9.60 7.85 -10.98 -0.09 9.51 16 11 O -0.58 -14.54 15.24 5.54 0.08 -14.46 16 12 C 0.11 1.84 6.15 -5.19 -0.03 1.81 16 13 N -0.70 -11.52 5.48 -62.43 -0.34 -11.86 16 14 C 0.56 8.94 7.77 -12.33 -0.10 8.84 16 15 O -0.55 -10.09 16.35 5.32 0.09 -10.00 16 16 C -0.12 -1.64 5.87 -104.97 -0.62 -2.26 16 17 C -0.06 -0.76 9.60 -39.18 -0.38 -1.13 16 18 C -0.11 -1.10 9.68 -39.64 -0.38 -1.48 16 19 C -0.08 -0.73 5.52 -104.53 -0.58 -1.31 16 20 C 0.11 0.80 7.16 36.01 0.26 1.06 16 21 O -0.57 -4.49 13.64 -35.23 -0.48 -4.97 16 22 C -0.11 -1.09 9.68 -39.64 -0.38 -1.47 16 23 C -0.09 -1.01 9.54 -39.18 -0.37 -1.38 16 24 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 26 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.41 6.59 5.47 -40.82 -0.22 6.37 16 29 H 0.14 1.60 7.65 -52.49 -0.40 1.20 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 8.08 -51.92 -0.42 -0.11 16 33 H 0.38 1.07 9.12 45.56 0.42 1.49 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 1.49 6.41 -52.48 -0.34 1.15 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -34.31 311.39 -5.74 -40.05 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -2.87 Total: 15.19 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.91 Total: 4.61 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.38 Total: -49.34 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -0.31 Total: -29.43 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.31 -5.74 -40.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347783530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.841 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds