Wall clock time and date at job start Mon Mar 30 2020 23:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86796 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47153 * 270.00466 * 3 2 1 5 5 H 1.48504 * 109.46933 * 30.00009 * 3 2 1 6 6 H 1.48502 * 109.47277 * 149.99951 * 3 2 1 7 7 C 1.38949 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00081 * 359.97438 * 7 2 1 9 9 N 1.37103 * 120.00040 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99914 * 180.02562 * 9 7 2 11 11 O 1.21299 * 120.00172 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00181 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47429 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00159 * 179.97438 * 13 12 10 15 15 O 1.21555 * 119.99766 * 359.97438 * 14 13 12 16 16 C 1.47842 * 120.00091 * 179.97438 * 14 13 12 17 17 C 1.39577 * 120.14253 * 179.97438 * 16 14 13 18 18 C 1.37961 * 119.85136 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.14408 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.85322 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47152 * 90.00527 * 20 19 18 22 22 C 1.38360 * 120.29536 * 0.23424 * 19 18 17 23 23 C 1.37958 * 120.14241 * 359.48587 * 22 19 18 24 24 H 0.97000 * 119.99949 * 359.97438 * 1 2 3 25 25 H 0.96993 * 120.00002 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.47124 * 59.99164 * 12 10 9 27 27 H 1.09002 * 109.46143 * 299.99546 * 12 10 9 28 28 H 0.97005 * 119.99327 * 359.97438 * 13 12 10 29 29 H 1.07994 * 120.07744 * 0.02562 * 17 16 14 30 30 H 1.08001 * 119.92867 * 180.02562 * 18 17 16 31 31 H 1.08997 * 109.47198 * 330.00204 * 20 19 18 32 32 H 1.09008 * 109.47393 * 209.99921 * 20 19 18 33 33 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.93147 * 179.74152 * 22 19 18 35 35 H 1.08003 * 120.07281 * 180.24846 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3705 -0.0021 11 8 3.4472 -3.4210 -0.0021 12 6 5.5607 -2.3706 -0.0021 13 7 6.0490 -3.7518 -0.0027 14 6 7.3741 -3.9981 -0.0034 15 8 8.1640 -3.0742 -0.0039 16 6 7.8669 -5.3920 -0.0034 17 6 9.2385 -5.6505 -0.0046 18 6 9.6918 -6.9535 -0.0052 19 6 8.7900 -8.0028 -0.0051 20 6 9.2923 -9.4236 -0.0063 21 8 9.4520 -9.8735 1.3406 22 6 7.4290 -7.7535 -0.0094 23 6 6.9626 -6.4552 -0.0030 24 1 -0.4850 0.8401 0.0004 25 1 3.8648 -0.3633 -0.0014 26 1 5.9241 -1.8575 0.8882 27 1 5.9239 -1.8560 -0.8917 28 1 5.4186 -4.4890 -0.0027 29 1 9.9435 -4.8323 -0.0051 30 1 10.7528 -7.1549 -0.0057 31 1 10.2521 -9.4692 -0.5209 32 1 8.5739 -10.0626 -0.5200 33 1 9.7737 -10.7823 1.4162 34 1 6.7303 -8.5770 -0.0135 35 1 5.9000 -6.2619 -0.0022 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347783530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:35 Heat of formation + Delta-G solvation = -121.411914 kcal Electronic energy + Delta-G solvation = -20109.657297 eV Core-core repulsion = 16685.515134 eV Total energy + Delta-G solvation = -3424.142163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45588 -40.40270 -39.52125 -37.41888 -36.34836 -35.47060 -33.86653 -32.97294 -32.02697 -29.68543 -27.44810 -26.07916 -23.70481 -23.28720 -21.52081 -21.35578 -20.61638 -19.23060 -18.34195 -17.68727 -17.20590 -16.90098 -16.84505 -16.48551 -16.10347 -15.96338 -15.61212 -15.15523 -14.80772 -14.68957 -14.43528 -14.23562 -14.04367 -13.95287 -13.71638 -13.33021 -12.97750 -12.46241 -12.24079 -12.11786 -12.01352 -11.60020 -11.20666 -10.94851 -10.69477 -10.39146 -10.31531 -10.01698 -9.90697 -8.47086 -6.09341 -0.30353 0.35186 1.30201 1.33011 1.43114 1.68545 1.77388 1.90841 2.19395 2.73544 2.82197 3.09034 3.46563 3.67926 3.75480 3.94397 3.97302 4.14583 4.24923 4.34267 4.36780 4.37028 4.56130 4.64174 4.78884 4.99803 5.13128 5.23866 5.30260 5.46632 5.48788 5.83751 5.85979 6.37995 6.46397 6.75898 6.93819 7.00734 7.26718 7.74965 8.69271 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040664 B = 0.002972 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.402942 B = 9418.804543 C =10012.993353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.576 5.576 10 C 0.444 3.556 11 O -0.614 6.614 12 C 0.116 3.884 13 N -0.705 5.705 14 C 0.558 3.442 15 O -0.573 6.573 16 C -0.146 4.146 17 C -0.071 4.071 18 C -0.108 4.108 19 C -0.075 4.075 20 C 0.114 3.886 21 O -0.590 6.590 22 C -0.111 4.111 23 C -0.092 4.092 24 H 0.282 0.718 25 H 0.392 0.608 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.413 0.587 29 H 0.137 0.863 30 H 0.155 0.845 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.402 0.598 34 H 0.150 0.850 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.813 -14.812 -1.077 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.208 4.208 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.156 1.156 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.216 5.216 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.011 4.011 13 N -0.359 5.359 14 C 0.347 3.653 15 O -0.454 6.454 16 C -0.149 4.149 17 C -0.090 4.090 18 C -0.126 4.126 19 C -0.075 4.075 20 C 0.037 3.963 21 O -0.400 6.400 22 C -0.129 4.129 23 C -0.111 4.111 24 H 0.091 0.909 25 H 0.228 0.772 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.252 0.748 29 H 0.155 0.845 30 H 0.173 0.827 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.168 0.832 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.502 -14.132 -0.953 25.748 hybrid contribution -0.560 0.365 -0.106 0.676 sum 20.942 -13.767 -1.059 25.085 Atomic orbital electron populations 1.69775 1.08029 1.29508 1.49120 1.26070 0.96441 1.02609 0.95651 0.85443 0.79568 0.77005 0.80099 1.18035 1.19784 1.15624 1.19035 0.80899 0.95318 1.50859 0.91791 1.41917 1.06180 1.07393 1.66112 1.20451 0.89927 0.83944 0.82496 1.90525 1.70721 1.32299 1.56485 1.20947 0.89781 0.84950 1.05456 1.45664 1.07247 1.08957 1.74075 1.18596 0.81507 0.89555 0.75639 1.90724 1.55917 1.46638 1.52110 1.19906 0.95561 0.91554 1.07869 1.21372 0.93767 0.98155 0.95718 1.21309 1.01196 0.90936 0.99174 1.20277 0.93468 0.96231 0.97567 1.21106 1.01153 0.89965 0.84037 1.86516 1.90190 1.36665 1.26634 1.21293 0.95830 0.96604 0.99132 1.21531 0.99755 0.92672 0.97139 0.90869 0.77168 0.87574 0.87370 0.74771 0.84548 0.82726 0.90329 0.90683 0.74731 0.83222 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 13.96 21.66 0.30 -54.00 16 2 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 3 Si 0.96 38.09 27.73 68.60 1.90 39.99 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 7 C -0.33 -18.87 10.16 84.04 0.85 -18.01 16 8 H 0.06 4.29 7.39 -2.91 -0.02 4.26 16 9 N -0.58 -26.57 5.09 -306.97 -1.56 -28.13 16 10 C 0.44 19.51 7.85 87.66 0.69 20.20 16 11 O -0.61 -31.74 15.24 -3.09 -0.05 -31.79 16 12 C 0.12 3.89 6.15 85.63 0.53 4.41 16 13 N -0.71 -22.84 5.48 -469.72 -2.57 -25.41 16 14 C 0.56 17.71 7.77 86.79 0.67 18.38 16 15 O -0.57 -20.78 16.35 -3.89 -0.06 -20.84 16 16 C -0.15 -3.86 5.87 -20.09 -0.12 -3.98 16 17 C -0.07 -1.63 9.60 22.53 0.22 -1.41 16 18 C -0.11 -1.92 9.68 22.23 0.22 -1.71 16 19 C -0.08 -1.28 5.52 -19.81 -0.11 -1.39 16 20 C 0.11 1.21 7.16 71.24 0.51 1.72 16 21 O -0.59 -7.61 13.64 -148.98 -2.03 -9.64 16 22 C -0.11 -2.08 9.68 22.23 0.22 -1.87 16 23 C -0.09 -2.13 9.54 22.53 0.21 -1.91 16 24 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 25 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 26 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 27 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.41 13.34 5.47 -92.70 -0.51 12.83 16 29 H 0.14 3.08 7.65 -2.91 -0.02 3.06 16 30 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 32 H 0.08 0.54 8.08 -2.38 -0.02 0.52 16 33 H 0.40 1.07 9.12 -74.06 -0.68 0.40 16 34 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.13 2.99 6.41 -2.91 -0.02 2.97 16 Total: -1.00 -77.44 311.39 -0.33 -77.77 By element: Atomic # 1 Polarization: 38.18 SS G_CDS: -0.61 Total: 37.57 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 4.36 Total: 14.49 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -3.83 Total: -107.53 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: -2.14 Total: -62.27 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -77.44 -0.33 -77.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347783530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.645 kcal (2) G-P(sol) polarization free energy of solvation -77.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds