Wall clock time and date at job start Mon Mar 30 2020 23:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00108 * 2 1 4 4 H 1.48493 * 109.47179 * 269.99820 * 3 2 1 5 5 H 1.48499 * 109.46848 * 30.00170 * 3 2 1 6 6 H 1.48500 * 109.47073 * 150.00127 * 3 2 1 7 7 C 1.37884 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00027 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.46888 * 300.00402 * 9 7 2 11 11 O 1.45198 * 109.47160 * 180.02562 * 9 7 2 12 12 C 1.34221 * 116.99903 * 150.00217 * 11 9 7 13 13 O 1.20826 * 120.00367 * 359.97438 * 12 11 9 14 14 C 1.50706 * 120.00092 * 180.02562 * 12 11 9 15 15 C 1.50698 * 109.47294 * 180.02562 * 14 12 11 16 16 C 1.38216 * 120.01717 * 99.99685 * 15 14 12 17 17 C 1.38222 * 120.02705 * 179.97438 * 16 15 14 18 18 C 1.38268 * 120.05202 * 0.02562 * 17 16 15 19 19 C 1.38177 * 120.02417 * 0.02562 * 18 17 16 20 20 C 1.38444 * 120.00987 * 279.72150 * 15 14 12 21 21 F 1.35100 * 120.02524 * 359.97438 * 20 15 14 22 22 C 1.53007 * 109.46692 * 60.00368 * 9 7 2 23 23 C 1.52999 * 117.49836 * 248.74400 * 22 9 7 24 24 C 1.52997 * 117.49449 * 180.08543 * 22 9 7 25 25 H 0.96999 * 119.99836 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99668 * 14 12 11 27 27 H 1.09000 * 109.47318 * 59.99266 * 14 12 11 28 28 H 1.08002 * 119.98512 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.97441 * 180.02562 * 17 16 15 30 30 H 1.07993 * 119.98818 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.01029 * 179.97438 * 19 18 17 32 32 H 1.08999 * 115.54632 * 34.41943 * 22 9 7 33 33 H 1.08999 * 117.49835 * 0.02562 * 23 22 9 34 34 H 1.08999 * 117.49667 * 145.02546 * 23 22 9 35 35 H 1.08998 * 117.49928 * 214.98052 * 24 22 9 36 36 H 1.09003 * 117.50176 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 2.1946 -3.6028 -0.0005 12 6 1.8033 -4.7390 0.5974 13 8 0.7088 -4.8090 1.1044 14 6 2.7296 -5.9272 0.6374 15 6 2.0557 -7.0655 1.3592 16 6 1.4677 -8.0889 0.6400 17 6 0.8500 -9.1333 1.3019 18 6 0.8190 -9.1554 2.6840 19 6 1.4052 -8.1329 3.4052 20 6 2.0302 -7.0894 2.7432 21 9 2.6099 -6.0928 3.4474 22 6 0.3710 -2.5800 -1.2496 23 6 -1.1446 -2.5124 -1.0515 24 6 -0.4806 -3.8376 -1.4336 25 1 -0.4850 0.8400 0.0004 26 1 2.9703 -6.2346 -0.3803 27 1 3.6461 -5.6559 1.1613 28 1 1.4909 -8.0724 -0.4397 29 1 0.3911 -9.9328 0.7390 30 1 0.3357 -9.9717 3.2001 31 1 1.3805 -8.1502 4.4847 32 1 0.7827 -2.1154 -2.1455 33 1 -1.5148 -2.4101 -0.0314 34 1 -1.7301 -2.0037 -1.8174 35 1 -0.6295 -4.2003 -2.4506 36 1 -0.4142 -4.6074 -0.6646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347936712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:01 Heat of formation + Delta-G solvation = -85.562243 kcal Electronic energy + Delta-G solvation = -21491.101908 eV Core-core repulsion = 18048.594342 eV Total energy + Delta-G solvation = -3442.507566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.78622 -39.85204 -38.79485 -36.39761 -34.85645 -32.94794 -32.62111 -30.56443 -28.45878 -27.23135 -23.38776 -22.81786 -22.15049 -21.24024 -20.29423 -19.14694 -17.57135 -17.12585 -16.57739 -16.48326 -15.81881 -15.55267 -15.30862 -14.95052 -14.48621 -14.22202 -13.87857 -13.35259 -13.21636 -12.98694 -12.62253 -12.20967 -12.10785 -11.59442 -11.50583 -11.25163 -11.09647 -10.99443 -10.91136 -10.40107 -10.25728 -9.81142 -9.69440 -9.34873 -9.06056 -8.96107 -8.64482 -8.63296 -8.40587 -6.13129 -4.20959 1.10617 1.18193 3.01076 3.26665 3.31906 3.34457 3.42559 3.86574 4.29713 4.37268 4.54692 4.69426 4.87421 5.05495 5.12506 5.18954 5.26554 5.47701 5.56566 5.69736 5.88600 5.96551 6.01668 6.10449 6.18067 6.26792 6.33355 6.40969 6.56197 6.70519 6.86069 7.02073 7.17834 7.29742 7.42496 7.65603 7.88360 8.14305 8.66171 8.91811 9.43581 10.93649 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.004727 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.169583 B = 5921.992095 C = 6475.032369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.249 3.751 10 H 0.048 0.952 11 O -0.352 6.352 12 C 0.456 3.544 13 O -0.512 6.512 14 C -0.080 4.080 15 C -0.100 4.100 16 C -0.079 4.079 17 C -0.133 4.133 18 C -0.094 4.094 19 C -0.156 4.156 20 C 0.118 3.882 21 F -0.134 7.134 22 C -0.114 4.114 23 C -0.124 4.124 24 C -0.229 4.229 25 H 0.264 0.736 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 -16.516 1.547 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.196 3.804 10 H 0.066 0.934 11 O -0.268 6.268 12 C 0.299 3.701 13 O -0.402 6.402 14 C -0.118 4.118 15 C -0.101 4.101 16 C -0.097 4.097 17 C -0.151 4.151 18 C -0.112 4.112 19 C -0.175 4.175 20 C 0.099 3.901 21 F -0.113 7.113 22 C -0.133 4.133 23 C -0.161 4.161 24 C -0.266 4.266 25 H 0.073 0.927 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.183 -16.299 1.714 16.534 hybrid contribution 0.251 1.235 0.064 1.262 sum 2.434 -15.065 1.778 15.363 Atomic orbital electron populations 1.70049 1.05759 1.26961 1.48151 1.24879 0.95020 0.99053 0.94563 0.86361 0.79720 0.82332 0.78223 1.20454 1.21050 1.19670 1.20917 0.93823 0.88410 1.53410 0.91305 1.20211 0.86138 0.80430 0.93578 0.93435 1.86470 1.49262 1.21981 1.69062 1.23017 0.86516 0.84941 0.75658 1.90592 1.22594 1.83400 1.43569 1.20227 0.98421 0.89866 1.03265 1.19443 1.01827 0.97030 0.91830 1.20938 0.95770 0.92830 1.00155 1.21136 1.00440 0.99005 0.94493 1.20974 0.98235 0.97817 0.94132 1.21103 1.00831 0.94658 1.00877 1.17550 0.96729 0.86643 0.89175 1.91517 1.81800 1.59385 1.78585 1.22595 0.92902 0.97358 1.00458 1.22359 0.95591 0.96742 1.01391 1.23282 1.09525 0.93056 1.00775 0.92653 0.86806 0.87050 0.84962 0.85376 0.85220 0.84832 0.89350 0.89367 0.90803 0.91083 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.46 11.43 55.43 0.63 -23.83 16 2 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 3 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.82 8.88 -34.44 -0.31 -15.13 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.25 6.64 2.25 -27.88 -0.06 6.58 16 10 H 0.05 1.42 6.91 -51.93 -0.36 1.06 16 11 O -0.35 -8.37 9.85 -39.23 -0.39 -8.75 16 12 C 0.46 9.50 7.17 36.01 0.26 9.75 16 13 O -0.51 -11.97 13.00 -18.75 -0.24 -12.21 16 14 C -0.08 -1.20 5.67 -29.03 -0.16 -1.37 16 15 C -0.10 -1.44 4.43 -104.56 -0.46 -1.90 16 16 C -0.08 -0.94 9.67 -39.60 -0.38 -1.32 16 17 C -0.13 -1.35 10.04 -39.58 -0.40 -1.75 16 18 C -0.09 -0.95 10.04 -39.59 -0.40 -1.35 16 19 C -0.16 -1.89 10.03 -39.51 -0.40 -2.29 16 20 C 0.12 1.77 7.14 -39.42 -0.28 1.49 16 21 F -0.13 -2.25 16.66 2.25 0.04 -2.21 16 22 C -0.11 -2.83 4.47 -90.62 -0.41 -3.23 16 23 C -0.12 -2.90 9.04 -26.69 -0.24 -3.14 16 24 C -0.23 -4.98 9.80 -26.69 -0.26 -5.25 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 26 H 0.11 1.36 8.00 -51.93 -0.42 0.94 16 27 H 0.11 1.53 7.94 -51.93 -0.41 1.12 16 28 H 0.13 1.30 8.04 -52.49 -0.42 0.87 16 29 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.09 2.24 8.11 -51.93 -0.42 1.82 16 33 H 0.09 2.22 8.05 -51.93 -0.42 1.80 16 34 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.09 2.11 5.38 -51.93 -0.28 1.83 16 LS Contribution 314.73 15.07 4.74 4.74 Total: -1.00 -31.35 314.73 -8.22 -39.57 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.39 Total: 3.71 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -3.60 Total: -17.11 kcal Atomic # 7 Polarization: -24.46 SS G_CDS: 0.63 Total: -23.83 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.63 Total: -20.97 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.35 -8.22 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.993 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds