Wall clock time and date at job start Mon Mar 30 2020 23:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00108 * 2 1 4 4 H 1.48493 * 109.47179 * 269.99820 * 3 2 1 5 5 H 1.48499 * 109.46848 * 30.00170 * 3 2 1 6 6 H 1.48500 * 109.47073 * 150.00127 * 3 2 1 7 7 C 1.37884 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00027 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.46888 * 300.00402 * 9 7 2 11 11 O 1.45198 * 109.47160 * 180.02562 * 9 7 2 12 12 C 1.34221 * 116.99903 * 150.00217 * 11 9 7 13 13 O 1.20826 * 120.00367 * 359.97438 * 12 11 9 14 14 C 1.50706 * 120.00092 * 180.02562 * 12 11 9 15 15 C 1.50698 * 109.47294 * 180.02562 * 14 12 11 16 16 C 1.38216 * 120.01717 * 99.99685 * 15 14 12 17 17 C 1.38222 * 120.02705 * 179.97438 * 16 15 14 18 18 C 1.38268 * 120.05202 * 0.02562 * 17 16 15 19 19 C 1.38177 * 120.02417 * 0.02562 * 18 17 16 20 20 C 1.38444 * 120.00987 * 279.72150 * 15 14 12 21 21 F 1.35100 * 120.02524 * 359.97438 * 20 15 14 22 22 C 1.53007 * 109.46692 * 60.00368 * 9 7 2 23 23 C 1.52999 * 117.49836 * 248.74400 * 22 9 7 24 24 C 1.52997 * 117.49449 * 180.08543 * 22 9 7 25 25 H 0.96999 * 119.99836 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46953 * 299.99668 * 14 12 11 27 27 H 1.09000 * 109.47318 * 59.99266 * 14 12 11 28 28 H 1.08002 * 119.98512 * 359.97438 * 16 15 14 29 29 H 1.08004 * 119.97441 * 180.02562 * 17 16 15 30 30 H 1.07993 * 119.98818 * 179.97438 * 18 17 16 31 31 H 1.07998 * 120.01029 * 179.97438 * 19 18 17 32 32 H 1.08999 * 115.54632 * 34.41943 * 22 9 7 33 33 H 1.08999 * 117.49835 * 0.02562 * 23 22 9 34 34 H 1.08999 * 117.49667 * 145.02546 * 23 22 9 35 35 H 1.08998 * 117.49928 * 214.98052 * 24 22 9 36 36 H 1.09003 * 117.50176 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 2.1946 -3.6028 -0.0005 12 6 1.8033 -4.7390 0.5974 13 8 0.7088 -4.8090 1.1044 14 6 2.7296 -5.9272 0.6374 15 6 2.0557 -7.0655 1.3592 16 6 1.4677 -8.0889 0.6400 17 6 0.8500 -9.1333 1.3019 18 6 0.8190 -9.1554 2.6840 19 6 1.4052 -8.1329 3.4052 20 6 2.0302 -7.0894 2.7432 21 9 2.6099 -6.0928 3.4474 22 6 0.3710 -2.5800 -1.2496 23 6 -1.1446 -2.5124 -1.0515 24 6 -0.4806 -3.8376 -1.4336 25 1 -0.4850 0.8400 0.0004 26 1 2.9703 -6.2346 -0.3803 27 1 3.6461 -5.6559 1.1613 28 1 1.4909 -8.0724 -0.4397 29 1 0.3911 -9.9328 0.7390 30 1 0.3357 -9.9717 3.2001 31 1 1.3805 -8.1502 4.4847 32 1 0.7827 -2.1154 -2.1455 33 1 -1.5148 -2.4101 -0.0314 34 1 -1.7301 -2.0037 -1.8174 35 1 -0.6295 -4.2003 -2.4506 36 1 -0.4142 -4.6074 -0.6646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347936712.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:01 Heat of formation + Delta-G solvation = -101.660311 kcal Electronic energy + Delta-G solvation = -21491.799973 eV Core-core repulsion = 18048.594342 eV Total energy + Delta-G solvation = -3443.205631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.94461 -41.48198 -39.87158 -38.21250 -36.69474 -34.72410 -34.04425 -31.46332 -30.17862 -28.69765 -25.34802 -23.76534 -23.40448 -23.07239 -21.82376 -21.02725 -19.02985 -18.56135 -18.37923 -17.66154 -17.29127 -16.90378 -16.65182 -16.58448 -16.16358 -15.69215 -15.10921 -14.85624 -14.49742 -14.22882 -14.21069 -13.52164 -13.41635 -13.17230 -13.09811 -12.96032 -12.80535 -12.46568 -12.25017 -12.18741 -11.97771 -11.78435 -11.47402 -11.23354 -10.95790 -10.61302 -10.44422 -9.92887 -9.61889 -8.22820 -6.40078 0.15169 0.27800 1.36364 1.41508 1.42775 1.53454 2.02668 2.41495 2.73859 3.04535 3.24024 3.33892 3.46943 3.77144 4.03132 4.07836 4.12357 4.27414 4.30844 4.39481 4.42913 4.50082 4.53893 4.71095 4.79997 4.95961 5.10388 5.11720 5.21901 5.25444 5.38375 5.39392 5.47186 5.48256 5.55557 5.85060 5.97240 6.15328 6.63412 7.01130 7.30115 8.83470 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.004727 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.169583 B = 5921.992095 C = 6475.032369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.558 4.558 8 H 0.063 0.937 9 C 0.254 3.746 10 H 0.002 0.998 11 O -0.362 6.362 12 C 0.449 3.551 13 O -0.541 6.541 14 C -0.070 4.070 15 C -0.124 4.124 16 C -0.084 4.084 17 C -0.126 4.126 18 C -0.087 4.087 19 C -0.165 4.165 20 C 0.078 3.922 21 F -0.157 7.157 22 C -0.131 4.131 23 C -0.125 4.125 24 C -0.195 4.195 25 H 0.267 0.733 26 H 0.149 0.851 27 H 0.119 0.881 28 H 0.154 0.846 29 H 0.164 0.836 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -18.313 0.377 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.596 4.596 8 H 0.081 0.919 9 C 0.201 3.799 10 H 0.020 0.980 11 O -0.279 6.279 12 C 0.294 3.706 13 O -0.432 6.432 14 C -0.107 4.107 15 C -0.125 4.125 16 C -0.102 4.102 17 C -0.144 4.144 18 C -0.104 4.104 19 C -0.183 4.183 20 C 0.059 3.941 21 F -0.136 7.136 22 C -0.150 4.150 23 C -0.163 4.163 24 C -0.232 4.232 25 H 0.076 0.924 26 H 0.167 0.833 27 H 0.137 0.863 28 H 0.172 0.828 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.123 -18.122 0.545 18.254 hybrid contribution 0.217 1.663 0.490 1.747 sum 2.341 -16.459 1.035 16.657 Atomic orbital electron populations 1.70163 1.07029 1.27949 1.47953 1.25721 0.95947 1.02299 0.93662 0.85314 0.78362 0.77792 0.78702 1.19264 1.20396 1.19398 1.21200 0.93779 0.89838 1.54771 0.91918 1.19827 0.86172 0.81287 0.92605 0.97980 1.86461 1.48846 1.22621 1.69962 1.24188 0.87128 0.85123 0.74159 1.90565 1.24358 1.83760 1.44560 1.20333 0.97131 0.87523 1.05679 1.19545 1.03472 0.97709 0.91746 1.21301 0.95089 0.92481 1.01347 1.21621 0.98970 0.99024 0.94791 1.21458 0.96800 0.97707 0.94470 1.21415 1.00530 0.94492 1.01901 1.18063 0.98651 0.87445 0.89913 1.91448 1.82494 1.60571 1.79105 1.22383 0.93204 1.00194 0.99267 1.22277 0.94896 0.98616 1.00470 1.23270 1.06032 0.91565 1.02349 0.92386 0.83311 0.86304 0.82800 0.81799 0.81635 0.83557 0.90075 0.92033 0.89178 0.87500 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.17 11.43 21.45 0.25 -50.92 16 2 C 0.03 1.44 5.30 84.66 0.45 1.89 16 3 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.56 -32.38 8.88 25.60 0.23 -32.15 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 9 C 0.25 14.13 2.25 29.85 0.07 14.20 16 10 H 0.00 0.16 6.91 -2.39 -0.02 0.14 16 11 O -0.36 -17.80 9.85 -51.33 -0.51 -18.31 16 12 C 0.45 19.14 7.17 71.24 0.51 19.65 16 13 O -0.54 -26.22 13.00 21.96 0.29 -25.94 16 14 C -0.07 -2.06 5.67 29.10 0.17 -1.90 16 15 C -0.12 -3.47 4.43 -19.82 -0.09 -3.55 16 16 C -0.08 -1.79 9.67 22.26 0.22 -1.58 16 17 C -0.13 -2.11 10.04 22.27 0.22 -1.89 16 18 C -0.09 -1.49 10.04 22.26 0.22 -1.27 16 19 C -0.16 -3.83 10.03 22.31 0.22 -3.60 16 20 C 0.08 2.36 7.14 22.38 0.16 2.52 16 21 F -0.16 -5.56 16.66 44.97 0.75 -4.81 16 22 C -0.13 -6.62 4.47 -10.79 -0.05 -6.67 16 23 C -0.13 -5.93 9.04 30.62 0.28 -5.66 16 24 C -0.20 -8.32 9.80 30.62 0.30 -8.02 16 25 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.15 3.26 8.00 -2.39 -0.02 3.24 16 27 H 0.12 3.31 7.94 -2.39 -0.02 3.29 16 28 H 0.15 2.49 8.04 -2.91 -0.02 2.46 16 29 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 30 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.08 4.16 8.11 -2.39 -0.02 4.15 16 33 H 0.06 3.22 8.05 -2.39 -0.02 3.20 16 34 H 0.09 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.09 3.83 5.38 -2.39 -0.01 3.82 16 Total: -1.00 -71.36 314.73 6.80 -64.56 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.09 Total: 17.79 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 2.91 Total: -28.03 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.25 Total: -50.92 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.22 Total: -44.24 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.75 Total: -4.81 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -71.36 6.80 -64.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347936712.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.096 kcal (2) G-P(sol) polarization free energy of solvation -71.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds