Wall clock time and date at job start Tue Mar 31 2020 00:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48507 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47251 * 299.99606 * 3 2 1 6 6 H 1.48497 * 109.47495 * 59.99998 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.64965 * 178.98958 * 13 12 11 15 15 O 1.21599 * 119.99723 * 179.97438 * 14 13 12 16 16 C 1.47417 * 120.00029 * 359.96841 * 14 13 12 17 17 C 1.37997 * 125.84863 * 180.02562 * 16 14 13 18 18 C 1.39315 * 107.52986 * 180.02562 * 17 16 14 19 19 C 1.38350 * 107.40831 * 0.02562 * 18 17 16 20 20 C 1.46415 * 125.95621 * 179.97438 * 19 18 17 21 21 O 1.21340 * 120.00317 * 180.02562 * 20 19 18 22 22 N 1.36606 * 125.84583 * 359.72488 * 16 14 13 23 23 H 0.96999 * 125.67300 * 359.96012 * 22 16 14 24 24 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 25 25 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 27 27 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 28 28 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 29 29 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 30 30 H 1.09001 * 109.88372 * 218.38832 * 12 11 9 31 31 H 1.08000 * 126.23915 * 359.97438 * 17 16 14 32 32 H 1.08002 * 126.29722 * 180.02562 * 18 17 16 33 33 H 1.08006 * 120.00048 * 0.02562 * 20 19 18 34 34 H 1.09009 * 110.36844 * 265.29198 * 24 13 12 35 35 H 1.09002 * 110.37005 * 142.96697 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7040 -4.7411 2.1546 15 8 -1.5553 -4.0800 2.7175 16 6 -0.7443 -6.2128 2.2296 17 6 -1.6886 -6.9622 2.9013 18 6 -1.3634 -8.3050 2.7223 19 6 -0.2219 -8.3540 1.9422 20 6 0.4711 -9.5685 1.5078 21 8 1.4688 -9.4855 0.8223 22 7 0.1434 -7.0684 1.6414 23 1 0.9071 -6.8088 1.1027 24 6 0.4363 -2.6710 1.3058 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2208 -1.8683 -1.2404 27 1 2.5435 -4.0093 -0.9176 28 1 3.0876 -3.4620 0.7006 29 1 0.9492 -5.4571 -0.0284 30 1 1.9703 -5.3809 1.4345 31 1 -2.5264 -6.5778 3.4640 32 1 -1.9032 -9.1520 3.1195 33 1 0.0941 -10.5383 1.7975 34 1 0.9845 -2.2567 2.1520 35 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349456343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:26 Heat of formation + Delta-G solvation = -65.412743 kcal Electronic energy + Delta-G solvation = -21639.746007 eV Core-core repulsion = 18218.032151 eV Total energy + Delta-G solvation = -3421.713857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51817 -39.31268 -38.52018 -37.23931 -34.53136 -32.28089 -31.44180 -30.54503 -29.80261 -28.02701 -25.82375 -24.43878 -22.86512 -20.95149 -20.66823 -19.91795 -19.73725 -17.48998 -17.25131 -16.36539 -15.91970 -15.56257 -15.35225 -14.80233 -14.75392 -14.44888 -14.04640 -13.70085 -13.35196 -13.15146 -12.87556 -12.86746 -12.73174 -12.18563 -11.74135 -11.60707 -11.13623 -10.94750 -10.80223 -10.55130 -10.30210 -10.28400 -9.75290 -9.50219 -9.20024 -8.78995 -8.55854 -8.42060 -7.96537 -6.37517 -4.47994 0.74930 2.00482 2.84369 2.95527 3.14483 3.23930 3.26906 3.40124 3.56909 4.14498 4.19606 4.67336 4.89593 4.99077 5.07201 5.11084 5.18987 5.30540 5.53229 5.75682 5.82998 5.92546 6.01524 6.30914 6.40073 6.56126 6.68536 6.69387 6.80092 7.07833 7.13921 7.21751 7.23900 7.65034 7.87695 7.94755 8.45968 8.56725 9.21366 9.31194 10.69729 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.004544 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.828637 B = 6160.562817 C = 6765.115444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.250 3.750 10 O -0.584 6.584 11 C -0.115 4.115 12 C 0.090 3.910 13 N -0.605 5.605 14 C 0.586 3.414 15 O -0.529 6.529 16 C 0.015 3.985 17 C -0.139 4.139 18 C -0.129 4.129 19 C -0.089 4.089 20 C 0.407 3.593 21 O -0.475 6.475 22 N -0.507 5.507 23 H 0.425 0.575 24 C 0.094 3.906 25 H 0.272 0.728 26 H 0.386 0.614 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 -14.777 4.071 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.394 6.394 11 C -0.153 4.153 12 C -0.034 4.034 13 N -0.337 5.337 14 C 0.373 3.627 15 O -0.406 6.406 16 C -0.106 4.106 17 C -0.164 4.164 18 C -0.155 4.155 19 C -0.204 4.204 20 C 0.267 3.733 21 O -0.348 6.348 22 N -0.108 5.108 23 H 0.270 0.730 24 C -0.027 4.027 25 H 0.082 0.918 26 H 0.237 0.763 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.143 0.857 34 H 0.084 0.916 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.076 -14.766 3.828 15.254 hybrid contribution 0.303 1.524 -0.024 1.554 sum 0.226 -13.241 3.805 13.779 Atomic orbital electron populations 1.69648 1.06038 1.28068 1.49405 1.25094 0.95061 0.99901 0.93154 0.86314 0.80019 0.82524 0.77865 1.19541 1.20663 1.20672 1.21495 0.93791 0.89878 1.52720 0.91276 1.19604 0.86053 0.91709 0.81731 1.86077 1.53948 1.52205 1.47127 1.22626 0.97686 0.94539 1.00446 1.22211 0.89320 0.97093 0.94765 1.48741 1.25511 1.10390 1.49094 1.16895 0.81555 0.84527 0.79730 1.90810 1.38385 1.64674 1.46698 1.21081 0.95209 0.90699 1.03596 1.21259 1.00148 0.92046 1.02986 1.21433 0.95954 0.97372 1.00768 1.21693 1.02425 0.86444 1.09842 1.23417 0.82238 0.91648 0.76034 1.90592 1.23623 1.90399 1.30220 1.42801 1.23852 1.05463 1.38691 0.72988 1.23391 1.03157 0.75640 1.00469 0.91825 0.76276 0.90251 0.89903 0.92141 0.92614 0.82760 0.82770 0.85710 0.91645 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.25 10.68 55.43 0.59 -22.66 16 2 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 3 Si 0.91 19.87 29.54 -169.99 -5.02 14.85 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -13.64 8.26 -34.44 -0.28 -13.92 16 8 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 9 C 0.25 5.86 0.89 -89.63 -0.08 5.78 16 10 O -0.58 -14.60 13.19 -35.23 -0.46 -15.06 16 11 C -0.12 -2.20 6.13 -24.90 -0.15 -2.35 16 12 C 0.09 1.54 5.11 -3.07 -0.02 1.52 16 13 N -0.60 -12.26 3.33 -171.79 -0.57 -12.83 16 14 C 0.59 11.77 7.85 -12.52 -0.10 11.68 16 15 O -0.53 -12.24 17.13 5.28 0.09 -12.15 16 16 C 0.01 0.24 6.88 -82.09 -0.56 -0.33 16 17 C -0.14 -1.89 10.60 -39.27 -0.42 -2.31 16 18 C -0.13 -1.33 10.84 -39.14 -0.42 -1.76 16 19 C -0.09 -1.01 7.03 -82.23 -0.58 -1.59 16 20 C 0.41 3.76 11.66 34.02 0.40 4.16 16 21 O -0.47 -6.28 17.92 5.51 0.10 -6.18 16 22 N -0.51 -7.09 5.62 -5.97 -0.03 -7.12 16 23 H 0.43 5.81 4.86 -40.82 -0.20 5.61 16 24 C 0.09 2.20 5.51 -2.53 -0.01 2.19 16 25 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.39 9.98 7.18 45.56 0.33 10.30 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.08 1.47 8.02 -51.93 -0.42 1.06 16 29 H 0.06 0.98 7.07 -51.93 -0.37 0.62 16 30 H 0.06 0.81 7.25 -51.93 -0.38 0.43 16 31 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.07 1.56 8.03 -51.92 -0.42 1.14 16 35 H 0.09 2.35 7.48 -51.93 -0.39 1.96 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -30.59 303.01 -6.14 -36.73 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -3.07 Total: 15.06 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -2.32 Total: 4.79 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.01 Total: -42.60 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -0.28 Total: -33.39 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.59 -6.14 -36.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.686 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds