Wall clock time and date at job start Tue Mar 31 2020 00:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48507 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47251 * 299.99606 * 3 2 1 6 6 H 1.48497 * 109.47495 * 59.99998 * 3 2 1 7 7 C 1.37884 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99946 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88561 * 59.30055 * 9 7 2 11 11 C 1.55149 * 111.00456 * 183.18304 * 9 7 2 12 12 C 1.54327 * 102.94214 * 153.61700 * 11 9 7 13 13 N 1.47014 * 107.27187 * 337.80814 * 12 11 9 14 14 C 1.34784 * 125.64965 * 178.98958 * 13 12 11 15 15 O 1.21599 * 119.99723 * 179.97438 * 14 13 12 16 16 C 1.47417 * 120.00029 * 359.96841 * 14 13 12 17 17 C 1.37997 * 125.84863 * 180.02562 * 16 14 13 18 18 C 1.39315 * 107.52986 * 180.02562 * 17 16 14 19 19 C 1.38350 * 107.40831 * 0.02562 * 18 17 16 20 20 C 1.46415 * 125.95621 * 179.97438 * 19 18 17 21 21 O 1.21340 * 120.00317 * 180.02562 * 20 19 18 22 22 N 1.36606 * 125.84583 * 359.72488 * 16 14 13 23 23 H 0.96999 * 125.67300 * 359.96012 * 22 16 14 24 24 C 1.47419 * 108.70437 * 358.94082 * 13 12 11 25 25 H 0.97001 * 119.99988 * 0.02562 * 1 2 3 26 26 H 0.96700 * 114.00311 * 303.88347 * 10 9 7 27 27 H 1.09002 * 110.72373 * 271.97346 * 11 9 7 28 28 H 1.09000 * 110.72205 * 35.08155 * 11 9 7 29 29 H 1.08999 * 109.88583 * 97.22830 * 12 11 9 30 30 H 1.09001 * 109.88372 * 218.38832 * 12 11 9 31 31 H 1.08000 * 126.23915 * 359.97438 * 17 16 14 32 32 H 1.08002 * 126.29722 * 180.02562 * 18 17 16 33 33 H 1.08006 * 120.00048 * 0.02562 * 20 19 18 34 34 H 1.09009 * 110.36844 * 265.29198 * 24 13 12 35 35 H 1.09002 * 110.37005 * 142.96697 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4055 -2.5993 -1.1483 11 6 2.2254 -3.7039 0.0792 12 6 1.3640 -4.8021 0.7378 13 7 0.2764 -4.1282 1.4618 14 6 -0.7040 -4.7411 2.1546 15 8 -1.5553 -4.0800 2.7175 16 6 -0.7443 -6.2128 2.2296 17 6 -1.6886 -6.9622 2.9013 18 6 -1.3634 -8.3050 2.7223 19 6 -0.2219 -8.3540 1.9422 20 6 0.4711 -9.5685 1.5078 21 8 1.4688 -9.4855 0.8223 22 7 0.1434 -7.0684 1.6414 23 1 0.9071 -6.8088 1.1027 24 6 0.4363 -2.6710 1.3058 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2208 -1.8683 -1.2404 27 1 2.5435 -4.0093 -0.9176 28 1 3.0876 -3.4620 0.7006 29 1 0.9492 -5.4571 -0.0284 30 1 1.9703 -5.3809 1.4345 31 1 -2.5264 -6.5778 3.4640 32 1 -1.9032 -9.1520 3.1195 33 1 0.0941 -10.5383 1.7975 34 1 0.9845 -2.2567 2.1520 35 1 -0.5375 -2.1904 1.2116 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349456343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:26 Heat of formation + Delta-G solvation = -89.036930 kcal Electronic energy + Delta-G solvation = -21640.770429 eV Core-core repulsion = 18218.032151 eV Total energy + Delta-G solvation = -3422.738278 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.58695 -40.76643 -39.51704 -38.89729 -36.30621 -34.25373 -32.58272 -31.98799 -30.97393 -29.70683 -27.46661 -25.79854 -24.21324 -22.14147 -21.76899 -21.45225 -20.98763 -19.25514 -18.74910 -17.60097 -17.27726 -17.00289 -16.69009 -16.43577 -16.08331 -15.83159 -15.16763 -15.05554 -14.96581 -14.70964 -14.27802 -14.08803 -13.66258 -13.64858 -13.57951 -13.35916 -12.90696 -12.64980 -12.44046 -12.28039 -12.23139 -11.46717 -11.29961 -10.98778 -10.72361 -10.43520 -10.15955 -9.79102 -9.35656 -8.30875 -6.48756 -0.20454 0.94686 1.39151 1.42894 1.53616 1.72750 2.01213 2.12323 2.21649 2.35423 2.95046 3.36097 3.41308 3.55429 3.91904 3.94374 4.06612 4.18958 4.23148 4.32860 4.48228 4.60063 4.89279 4.91644 4.94566 5.04309 5.10773 5.25162 5.34870 5.49192 5.69414 5.78524 5.96106 6.13007 6.39410 6.47097 6.60349 6.90873 7.22010 7.29576 8.75084 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.004544 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.828637 B = 6160.562817 C = 6765.115444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.234 3.766 10 O -0.590 6.590 11 C -0.110 4.110 12 C 0.095 3.905 13 N -0.612 5.612 14 C 0.579 3.421 15 O -0.576 6.576 16 C -0.028 4.028 17 C -0.138 4.138 18 C -0.109 4.109 19 C -0.082 4.082 20 C 0.420 3.580 21 O -0.514 6.514 22 N -0.515 5.515 23 H 0.424 0.576 24 C 0.107 3.893 25 H 0.271 0.729 26 H 0.377 0.623 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.205 0.795 33 H 0.194 0.806 34 H 0.051 0.949 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 -17.956 4.456 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.596 4.596 8 H 0.090 0.910 9 C 0.193 3.807 10 O -0.399 6.399 11 C -0.148 4.148 12 C -0.027 4.027 13 N -0.344 5.344 14 C 0.370 3.630 15 O -0.457 6.457 16 C -0.146 4.146 17 C -0.165 4.165 18 C -0.134 4.134 19 C -0.197 4.197 20 C 0.282 3.718 21 O -0.389 6.389 22 N -0.116 5.116 23 H 0.268 0.732 24 C -0.015 4.015 25 H 0.081 0.919 26 H 0.227 0.773 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.222 0.778 33 H 0.210 0.790 34 H 0.069 0.931 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.771 -17.980 4.207 18.481 hybrid contribution 0.012 2.384 -0.124 2.388 sum 0.782 -15.595 4.083 16.140 Atomic orbital electron populations 1.69767 1.07261 1.28610 1.49984 1.25845 0.95744 1.02958 0.92849 0.85362 0.79130 0.78720 0.77559 1.18713 1.20522 1.20780 1.21821 0.94124 0.90962 1.52713 0.90960 1.19841 0.86541 0.93288 0.80992 1.86066 1.54019 1.51798 1.48000 1.22638 0.97352 0.93117 1.01698 1.22313 0.88486 0.96517 0.95422 1.48755 1.26700 1.09180 1.49717 1.17531 0.80492 0.86448 0.78539 1.90758 1.39977 1.66314 1.48612 1.20537 0.98072 0.88549 1.07471 1.21560 0.99342 0.93628 1.01935 1.21924 0.95175 0.97013 0.99293 1.22572 1.02454 0.86176 1.08522 1.24414 0.80764 0.92503 0.74101 1.90607 1.25541 1.90728 1.32053 1.42805 1.23625 1.06246 1.38908 0.73243 1.22936 1.00669 0.77768 1.00172 0.91923 0.77273 0.89143 0.88515 0.91079 0.89400 0.82707 0.77793 0.79042 0.93059 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.67 10.68 21.45 0.23 -49.44 16 2 C 0.03 1.40 5.27 84.66 0.45 1.84 16 3 Si 0.97 41.29 29.54 68.60 2.03 43.31 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.56 -28.65 8.26 25.60 0.21 -28.44 16 8 H 0.07 3.57 7.78 -2.92 -0.02 3.55 16 9 C 0.23 11.26 0.89 -10.15 -0.01 11.25 16 10 O -0.59 -30.51 13.19 -148.98 -1.96 -32.47 16 11 C -0.11 -4.15 6.13 31.78 0.19 -3.96 16 12 C 0.10 3.20 5.11 86.73 0.44 3.64 16 13 N -0.61 -25.60 3.33 -815.68 -2.71 -28.31 16 14 C 0.58 24.22 7.85 86.66 0.68 24.90 16 15 O -0.58 -28.31 17.13 -4.03 -0.07 -28.38 16 16 C -0.03 -0.88 6.88 40.76 0.28 -0.60 16 17 C -0.14 -3.52 10.60 22.47 0.24 -3.28 16 18 C -0.11 -1.76 10.84 22.56 0.24 -1.52 16 19 C -0.08 -1.53 7.03 40.49 0.28 -1.25 16 20 C 0.42 5.64 11.66 69.95 0.82 6.45 16 21 O -0.51 -11.80 17.92 -3.21 -0.06 -11.85 16 22 N -0.52 -13.40 5.62 -172.81 -0.97 -14.37 16 23 H 0.42 10.85 4.86 -92.71 -0.45 10.40 16 24 C 0.11 5.27 5.51 86.86 0.48 5.75 16 25 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 26 H 0.38 20.54 7.18 -74.06 -0.53 20.01 16 27 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 28 H 0.10 3.33 8.02 -2.39 -0.02 3.31 16 29 H 0.07 2.25 7.07 -2.39 -0.02 2.23 16 30 H 0.09 2.40 7.25 -2.39 -0.02 2.39 16 31 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.21 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 34 H 0.05 2.59 8.03 -2.38 -0.02 2.57 16 35 H 0.05 2.79 7.48 -2.39 -0.02 2.77 16 Total: -1.00 -71.40 303.01 0.95 -70.44 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.17 Total: 36.29 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 4.31 Total: 14.79 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -3.46 Total: -92.13 kcal Atomic # 8 Polarization: -70.62 SS G_CDS: -2.09 Total: -72.71 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Total: -71.40 0.95 -70.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349456343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.594 kcal (2) G-P(sol) polarization free energy of solvation -71.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds